Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Reverse (-)

56068010 .. 56072904

Gene Structure 4895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

ATGGTGGAGAGGAGGCATAAGAGGAAAGAGAGGGAGAGGAGTGAGGGTAGAGATGGCGGTGTGGATGAGTCTGAAGATTCTAAGAGAGCTAGGGGTTTGGATGAGAGGAAGCGATTTGATGACCGCCGAGTAAAGGAAGAAGAGGATGCTGGAGAATTGGAAGGGAATGTGATTCACAGTGAGGTTAAGGTTAAGAAAGAAGAATTGGAGGATGATGAGGGCTTCACTACCACCCAAAATGGGGGTGCTCCGGTGGGTAATGACCTGGTGCCAGTCTGGATTCTACTATGGAATCAAGGGTTGTGCCTGAGACCTCTCCCCCCCCTAGTCATCCCCATCCTACCAAGTACAGATGGGACATCTTCAACTGCTGGAAGAAGTGGAAATCTACCTCCTGGTGAGTTAGATAAAATTAAGAATCTTCTGGCGAAACGTAAGGAATTGGCTGACAAGCTGAACAAAACGAAGTTAGACAAAGCAGCCAAAGCTATTTCAGATGCTAGCGCAAACTTGGGATTGAAGGATGGGATGCAACCTCCATCTGCAAGTACAGGAATGTTGCATCCCCCTGTGCCATCAACAATTAGTGGTACAAGTGGAATGACCGGTCTGACTGGTGAAAAATATGAAGCTGTAAAACTTGCACAGGAGCGGGCTGCCAGGATGGGCTTTCGCCATGACCCAGAATTTGCTCCTGTTATAAACTTGTTCCCAGGACAGGTGGCAACAGATGTTGTTCCCCCTCAGAAGCCTACCAAGGCCCCTGTTCTTCGACTTGATGCCCTCGGAAGGGAAATAGATGAACATGGAAATGTGGTCAATGTGACTAAACCAAACAACCTCAGCACTTTAAAGGTCAACATTAACAAACAGAAGAAAGACGCATTCCAAATTCTTAAACCTGAAGTCGATATGGATCCTGAATCAAATCCTTTTTTTGACCCGAAGATGGGCATTAATATGACGAAGATTATGAGGCCAAAGAGGATGAACTTCCAGTTTGTAGAGGAAGGGAAGTGGTCAAGAGATGCTGAACATATGAAGTTGAAGAGTAAATTTGGGGAATTACAAGCAAAAGAGCATAGGGCGAAGCAGGCCCAGTTGGCAAAGGCAAAGGCAGCACCTGATACAAATCCAAATTTGATAGAGGTAGCAGAAAGAGTCATCACCAAAGAAAAACCGAAGGATCCAATTCCTGAAGTTGAGTGGTGGGATGTGTCCTTTTTACAATCTGGTACTTATGGTGAGCTTGTTGATGGTAGAATACCTGAAGACAGATTAAAGTTGGACAAAATCACCATCTATGTTGAACATCCTCAGCCCATTGAGCCCCCTGTGGAGCCAGCTCCTCCGCCACCTCAACCATTAAAGTTGACCAAGAAAGAGCAGAAAAAACTACGCACACAGCGTCGTCTTGCTAGAGAGAAAGATAAGCAGGAGATGATTAGACAGGGTCTGATCGAACCCCCCAAGTCAAAAGTTAAAATGAGTAATTTGATGAAAGTTCTTGGCTCCGAAGCAACCCAAGATCCAACCAGACTGGAGAAGGAGATCCGGAGTGCAGCTGCTGAACGTGAACAAGCTCATATAGACAGGAATATTGCCCGCAAGCTCACACCTGCTGAGCGCCGTGAGAAGAAAGAGAGGAAGCTTTTTGATGATCCAAATAATGTGGATACCATAGTCTCAGTTTATAAAATCAATGATCTATCTCATCCAAAGGCCCGCTTTAAGATTGATGTTAATGCCAGAGAGAATCGGCTGACTGGATGTGCTGTGATCTCAGATGGTATGAATGTTGTGGCTGTTGAAGGTGGAAGCAAATCTATCAAAAGGTATGCAAAGGTCATGCTTCGGCGCATAAACTGGGCTGAGGCTGTGAAAGAGGAGGAAGACGATGAAGAAGAAAATGATGATAAGCCTCCTAACAAGTGTGTCTTGGTGTGGCAAGGAAGTGTTGCCAGGCCTAGTTTCAATAGATTTTTGGTTCATGAATGCATGACTGAAGCTGCTGGTCGAAAGTTCTTTGCTGATGCTGGCGTTGCTCATTACTGGGATCTGGCAGTCAACTTTGCAGATGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030532 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1115 PRP3

Protein Analysis

695

Amino Acids

78.14

Weight (kDa)

8.6

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP3	PF08572	310 - 539	1.3e-64	pre-mRNA processing factor 3 domain
Prp3_C	PF06544	563 - 688	2.2e-42	Small nuclear ribonucleoprotein Prp3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	701, 1695
AarI	CACCTGC	1 cut(s)	1627
Acc36I	ACCTGC	1 cut(s)	1627
AccB1I	GGYRCC	1 cut(s)	268
AccBSI	CCGCTC	1 cut(s)	652
AccIII	TCCGGA	1 cut(s)	1554
AciI	CCGC	6 cut(s)	57, 124, 652, 1352, 1606, 1726
AclWI	GGATC	8 cut(s)	911, 924, 1181, 1194, 1523, 1546, 1655, 2064
AcsI	RAATTY	4 cut(s)	686, 891, 1055, 1138
AcuI	CTGAAG	5 cut(s)	93, 924, 1218, 1290, 2025
AfaI	GTAC	4 cut(s)	349, 550, 592, 1237
AfiI	CCNNNNNNNGG	8 cut(s)	133, 240, 241, 718, 789, 790, 949, 950
AgeI	ACCGGT	1 cut(s)	605
AgsI	TTSAA	6 cut(s)	366, 520, 1048, 1310, 1811, 1975
AjnI	CCWGG	5 cut(s)	264, 394, 659, 712, 1961
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	2 cut(s)	304, 1690
AlwI	GGATC	8 cut(s)	911, 924, 1181, 1194, 1523, 1546, 1655, 2064
AlwNI	CAGNNNCTG	3 cut(s)	1124, 1456, 1568
Aor13HI	TCCGGA	1 cut(s)	1554
AoxI	GGCC	5 cut(s)	759, 977, 1095, 1722, 1964
ApeKI	GCWGC	6 cut(s)	479, 656, 1118, 1562, 1565, 2009
ApoI	RAATTY	4 cut(s)	686, 891, 1055, 1138
ArsI	GACNNNNNNTTYG	2 cut(s)	671, 703
AseI	ATTAAT	1 cut(s)	957
AsiGI	ACCGGT	1 cut(s)	605
AspLEI	GCGC	3 cut(s)	506, 1629, 1860
AspS9I	GGNCC	3 cut(s)	760, 1096, 1723
AsuHPI	GGTGA	5 cut(s)	410, 629, 1159, 1256, 1288
AsuNHI	GCTAGC	1 cut(s)	500
BaeI	ACNNNNGTAYC	2 cut(s)	1668, 1701
BamHI	GGATCC	2 cut(s)	916, 1186
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	1332
BbsI	GAAGAC	2 cut(s)	1278, 1899
Bbv12I	GWGCWC	1 cut(s)	250
BbvCI	CCTCAGC	3 cut(s)	842, 1317, 1872
BbvI	GCAGC	6 cut(s)	491, 643, 1130, 1552, 1574, 1996
BceAI	ACGGC	1 cut(s)	1614
BciT130I	CCWGG	5 cut(s)	266, 396, 661, 714, 1963
BciVI	GTATCC	1 cut(s)	1669
BcoDI	GTCTC	2 cut(s)	304, 1690
BfaI	CTAG	6 cut(s)	90, 326, 501, 1419, 1968, 2086
BfoI	RGCGCY	1 cut(s)	1630
BfuAI	ACCTGC	1 cut(s)	1627
BfuI	GTATCC	1 cut(s)	1669
BglI	GCCNNNNNGGC	1 cut(s)	1103
BisI	GCNGC	6 cut(s)	480, 657, 1119, 1563, 1566, 2010
BlpI	GCTNAGC	1 cut(s)	1623
BlsI	GCNGC	6 cut(s)	481, 658, 1120, 1564, 1567, 2011
Bme1390I	CCNGG	5 cut(s)	266, 396, 661, 714, 1963
BmgT120I	GGNCC	3 cut(s)	760, 1096, 1723
BmiI	GGNNCC	6 cut(s)	270, 762, 918, 1188, 1341, 1513
BmrFI	CCNGG	5 cut(s)	266, 396, 661, 714, 1963
BmrI	ACTGGG	3 cut(s)	1093, 1876, 2062
BmsI	GCATC	7 cut(s)	136, 487, 519, 571, 769, 1018, 2023
BmtI	GCTAGC	1 cut(s)	504
BmuI	ACTGGG	3 cut(s)	1093, 1876, 2062
BpiI	GAAGAC	2 cut(s)	1278, 1899
BpmI	CTGGAG	2 cut(s)	171, 1562
Bpu10I	CCTNAGC	3 cut(s)	842, 1317, 1872
Bpu1102I	GCTNAGC	1 cut(s)	1623
BsaBI	GATNNNNATC	2 cut(s)	915, 1131
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	3 cut(s)	712, 756, 784
BsaWI	WCCGGW	3 cut(s)	250, 605, 1554
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	8 cut(s)	133, 240, 241, 718, 789, 790, 949, 950
Bse118I	RCCGGY	1 cut(s)	605
Bse1I	ACTGG	8 cut(s)	272, 619, 997, 1099, 1545, 1771, 1871, 2057
Bse8I	GATNNNNATC	2 cut(s)	915, 1131
BseAI	TCCGGA	1 cut(s)	1554
BseBI	CCWGG	5 cut(s)	266, 396, 661, 714, 1963
BseDI	CCNNGG	3 cut(s)	712, 756, 784
BseJI	GATNNNNATC	2 cut(s)	915, 1131
BseLI	CCNNNNNNNGG	8 cut(s)	133, 240, 241, 718, 789, 790, 949, 950
BseMII	CTCAG	8 cut(s)	299, 758, 856, 1331, 1614, 1701, 1797, 1863
BseNI	ACTGG	8 cut(s)	272, 619, 997, 1099, 1545, 1771, 1871, 2057
BseRI	GAGGAG	4 cut(s)	25, 52, 1338, 1901
BseXI	GCAGC	6 cut(s)	491, 643, 1130, 1552, 1574, 1996
BsgI	GTGCAG	1 cut(s)	1581
BshFI	GGCC	5 cut(s)	761, 979, 1097, 1724, 1966
BshNI	GGYRCC	1 cut(s)	268
BshTI	ACCGGT	1 cut(s)	605
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	3 cut(s)	251, 606, 1555
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	8 cut(s)	133, 240, 241, 718, 789, 790, 949, 950
BsmAI	GTCTC	2 cut(s)	304, 1690
BsmFI	GGGAC	1 cut(s)	370
BsmI	GAATGC	2 cut(s)	884, 2000
BsnI	GGCC	5 cut(s)	761, 979, 1097, 1724, 1966
Bso31I	GGTCTC	1 cut(s)	304
Bsp1286I	GDGCHC	2 cut(s)	250, 1332
Bsp13I	TCCGGA	1 cut(s)	1554
Bsp143I	GATC	9 cut(s)	916, 1186, 1458, 1528, 1551, 1660, 1705, 1779, 2056
Bsp1720I	GCTNAGC	1 cut(s)	1623
BspACI	CCGC	6 cut(s)	57, 124, 652, 1352, 1606, 1726
BspANI	GGCC	5 cut(s)	761, 979, 1097, 1724, 1966
BspCNI	CTCAG	8 cut(s)	300, 757, 855, 1330, 1615, 1700, 1796, 1864
BspEI	TCCGGA	1 cut(s)	1554
BspHI	TCATGA	1 cut(s)	1990
BspLI	GGNNCC	6 cut(s)	270, 762, 918, 1188, 1341, 1513
BspMI	ACCTGC	1 cut(s)	1627
BspOI	GCTAGC	1 cut(s)	504
BspPI	GGATC	8 cut(s)	911, 924, 1181, 1194, 1523, 1546, 1655, 2064
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	652
BsrFI	RCCGGY	1 cut(s)	605
BsrI	ACTGG	8 cut(s)	272, 619, 997, 1099, 1545, 1771, 1871, 2057
BssAI	RCCGGY	1 cut(s)	605
BssECI	CCNNGG	3 cut(s)	712, 756, 784
BssMI	GATC	9 cut(s)	916, 1186, 1458, 1528, 1551, 1660, 1705, 1779, 2056
BssT1I	CCWWGG	1 cut(s)	756
Bst2UI	CCWGG	5 cut(s)	266, 396, 661, 714, 1963
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	2 cut(s)	135, 1043
BstC8I	GCNNGC	8 cut(s)	502, 654, 1095, 1344, 1606, 1610, 1726, 2038
BstDEI	CTNAG	9 cut(s)	81, 308, 744, 842, 1317, 1623, 1687, 1783, 1872
BstH2I	RGCGCY	1 cut(s)	1630
BstHHI	GCGC	3 cut(s)	506, 1629, 1860
BstKTI	GATC	9 cut(s)	919, 1189, 1461, 1531, 1554, 1663, 1708, 1782, 2059
BstMAI	GTCTC	2 cut(s)	304, 1690
BstMBI	GATC	9 cut(s)	916, 1186, 1458, 1528, 1551, 1660, 1705, 1779, 2056
BstMWI	GCNNNNNNNGC	6 cut(s)	485, 1094, 1103, 1118, 1327, 2042
BstNI	CCWGG	5 cut(s)	266, 396, 661, 714, 1963
BstSCI	CCNGG	5 cut(s)	264, 394, 659, 712, 1961
BstV1I	GCAGC	6 cut(s)	491, 643, 1130, 1552, 1574, 1996
BstV2I	GAAGAC	2 cut(s)	1278, 1899
BstX2I	RGATCY	5 cut(s)	916, 1186, 1528, 1551, 2056
BstYI	RGATCY	5 cut(s)	916, 1186, 1528, 1551, 2056
BsuI	GTATCC	1 cut(s)	1669
BsuRI	GGCC	5 cut(s)	761, 979, 1097, 1724, 1966
BtsIMutI	CAGTG	1 cut(s)	184
BveI	ACCTGC	1 cut(s)	1627
Cac8I	GCNNGC	8 cut(s)	502, 654, 1095, 1344, 1606, 1610, 1726, 2038
CaiI	CAGNNNCTG	3 cut(s)	1124, 1456, 1568
CciI	TCATGA	1 cut(s)	1990
CfoI	GCGC	3 cut(s)	506, 1629, 1860
Cfr10I	RCCGGY	1 cut(s)	605
Cfr13I	GGNCC	3 cut(s)	760, 1096, 1723
CseI	GACGC	2 cut(s)	890, 1397
CsiI	ACCWGGT	1 cut(s)	264
Csp6I	GTAC	4 cut(s)	348, 549, 591, 1236
CspAI	ACCGGT	1 cut(s)	605
CspCI	CAANNNNNGTGG	2 cut(s)	1653, 1688
CviAII	CATG	5 cut(s)	677, 806, 1849, 1991, 1999
CviQI	GTAC	4 cut(s)	348, 549, 591, 1236
DdeI	CTNAG	9 cut(s)	81, 308, 744, 842, 1317, 1623, 1687, 1783, 1872
DpnI	GATC	9 cut(s)	918, 1188, 1460, 1530, 1553, 1662, 1707, 1781, 2058
DpnII	GATC	9 cut(s)	916, 1186, 1458, 1528, 1551, 1660, 1705, 1779, 2056
DraI	TTTAAA	1 cut(s)	852
Eam1104I	CTCTTC	2 cut(s)	135, 1043
EarI	CTCTTC	2 cut(s)	135, 1043
EciI	GGCGGA	1 cut(s)	1341
Eco130I	CCWWGG	1 cut(s)	756
Eco147I	AGGCCT	1 cut(s)	1966
Eco24I	GRGCYC	1 cut(s)	1332
Eco31I	GGTCTC	1 cut(s)	304
Eco57I	CTGAAG	5 cut(s)	93, 924, 1218, 1290, 2025
EcoO109I	RGGNCCY	1 cut(s)	760
EcoRII	CCWGG	5 cut(s)	264, 394, 659, 712, 1961
EcoT14I	CCWWGG	1 cut(s)	756
EcoT22I	ATGCAT	1 cut(s)	2000
EcoT38I	GRGCYC	1 cut(s)	1332
ErhI	CCWWGG	1 cut(s)	756
FaeI	CATG	5 cut(s)	680, 809, 1852, 1994, 2002
FalI	AAGNNNNNCTT	4 cut(s)	1712, 1744, 1922, 1954
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	5 cut(s)	676, 805, 1848, 1990, 1998
FauI	CCCGC	3 cut(s)	645, 1613, 1733
FauNDI	CATATG	1 cut(s)	1038
Fnu4HI	GCNGC	6 cut(s)	480, 657, 1119, 1563, 1566, 2010
FriOI	GRGCYC	1 cut(s)	1332
Fsp4HI	GCNGC	6 cut(s)	480, 657, 1119, 1563, 1566, 2010
FspBI	CTAG	6 cut(s)	90, 326, 501, 1419, 1968, 2086
GlaI	GCGC	3 cut(s)	505, 1628, 1859
GluI	GCNGC	6 cut(s)	480, 657, 1119, 1563, 1566, 2010
GsuI	CTGGAG	2 cut(s)	171, 1562
HaeII	RGCGCY	1 cut(s)	1630
HaeIII	GGCC	5 cut(s)	761, 979, 1097, 1724, 1966
HapII	CCGG	3 cut(s)	251, 606, 1555
HgaI	GACGC	2 cut(s)	890, 1397
HhaI	GCGC	3 cut(s)	506, 1629, 1860
Hin1II	CATG	5 cut(s)	680, 809, 1852, 1994, 2002
Hin6I	GCGC	3 cut(s)	504, 1627, 1858
HinP1I	GCGC	3 cut(s)	504, 1627, 1858
HincII	GTYRAC	3 cut(s)	859, 1374, 2068
HindII	GTYRAC	3 cut(s)	859, 1374, 2068
HindIII	AAGCTT	1 cut(s)	1649
HinfI	GANTC	9 cut(s)	68, 77, 172, 280, 292, 418, 923, 1161, 1756
HpaII	CCGG	3 cut(s)	251, 606, 1555
HphI	GGTGA	5 cut(s)	410, 629, 1159, 1256, 1288
Hpy166II	GTNNAC	4 cut(s)	859, 1374, 1577, 2068
Hpy188I	TCNGA	8 cut(s)	73, 496, 612, 747, 788, 1458, 1516, 1786
Hpy188III	TCNNGA	6 cut(s)	277, 920, 1023, 1196, 1555, 1991
Hpy8I	GTNNAC	4 cut(s)	859, 1374, 1577, 2068
Hpy99I	CGWCG	1 cut(s)	1413
HpyAV	CCTTC	7 cut(s)	155, 514, 783, 1004, 1177, 1540, 1805
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	2 cut(s)	433, 1573
HpyCH4V	TGCA	8 cut(s)	532, 545, 562, 644, 1562, 1841, 1998, 2075
HpyF10VI	GCNNNNNNNGC	6 cut(s)	485, 1094, 1103, 1118, 1327, 2042
HpyF3I	CTNAG	9 cut(s)	81, 308, 744, 842, 1317, 1623, 1687, 1783, 1872
HpySE526I	ACGT	2 cut(s)	433, 1573
Hsp92II	CATG	5 cut(s)	680, 809, 1852, 1994, 2002
HspAI	GCGC	3 cut(s)	504, 1627, 1858
Kpn2I	TCCGGA	1 cut(s)	1554
Kzo9I	GATC	9 cut(s)	916, 1186, 1458, 1528, 1551, 1660, 1705, 1779, 2056
LmnI	GCTCC	6 cut(s)	253, 649, 697, 1339, 1351, 1517
Lsp1109I	GCAGC	6 cut(s)	491, 643, 1130, 1552, 1574, 1996
LweI	GCATC	7 cut(s)	136, 487, 519, 571, 769, 1018, 2023
MabI	ACCWGGT	1 cut(s)	264
MaeI	CTAG	6 cut(s)	90, 326, 501, 1419, 1968, 2086
MaeII	ACGT	2 cut(s)	433, 1573
MaeIII	GTNAC	1 cut(s)	823
MalI	GATC	9 cut(s)	918, 1188, 1460, 1530, 1553, 1662, 1707, 1781, 2058
MbiI	CCGCTC	1 cut(s)	652
MboI	GATC	9 cut(s)	916, 1186, 1458, 1528, 1551, 1660, 1705, 1779, 2056
MflI	RGATCY	5 cut(s)	916, 1186, 1528, 1551, 2056
MhlI	GDGCHC	2 cut(s)	250, 1332
MlyI	GAGTC	2 cut(s)	77, 1170
MmeI	TCCRAC	2 cut(s)	1266, 1556
Mph1103I	ATGCAT	1 cut(s)	2000
MroI	TCCGGA	1 cut(s)	1554
MslI	CAYNNNNRTG	2 cut(s)	810, 959
MspA1I	CMGCKG	1 cut(s)	1565
MspI	CCGG	3 cut(s)	251, 606, 1555
MspR9I	CCNGG	5 cut(s)	266, 396, 661, 714, 1963
Mva1269I	GAATGC	2 cut(s)	884, 2000
MvaI	CCWGG	5 cut(s)	266, 396, 661, 714, 1963
MwoI	GCNNNNNNNGC	6 cut(s)	485, 1094, 1103, 1118, 1327, 2042
NdeI	CATATG	1 cut(s)	1038
NdeII	GATC	9 cut(s)	916, 1186, 1458, 1528, 1551, 1660, 1705, 1779, 2056
NheI	GCTAGC	1 cut(s)	500
NlaIII	CATG	5 cut(s)	680, 809, 1852, 1994, 2002
NlaIV	GGNNCC	6 cut(s)	270, 762, 918, 1188, 1341, 1513
NmeAIII	GCCGAG	1 cut(s)	152
NmuCI	GTSAC	1 cut(s)	823
NsiI	ATGCAT	1 cut(s)	2000
PagI	TCATGA	1 cut(s)	1990
PaqCI	CACCTGC	1 cut(s)	1627
PceI	AGGCCT	1 cut(s)	1966
PcsI	WCGNNNNNNNCGW	1 cut(s)	1405
PctI	GAATGC	2 cut(s)	884, 2000
PfeI	GAWTC	7 cut(s)	77, 172, 280, 292, 418, 923, 1756
PflFI	GACNNNGTC	1 cut(s)	1452
PinAI	ACCGGT	1 cut(s)	605
PkrI	GCNGC	6 cut(s)	481, 658, 1120, 1564, 1567, 2011
PleI	GAGTC	2 cut(s)	76, 1169
PpsI	GAGTC	2 cut(s)	76, 1169
PshBI	ATTAAT	1 cut(s)	957
PsiI	TTATAA	2 cut(s)	701, 1695
Psp6I	CCWGG	5 cut(s)	264, 394, 659, 712, 1961
PspGI	CCWGG	5 cut(s)	264, 394, 659, 712, 1961
PspN4I	GGNNCC	6 cut(s)	270, 762, 918, 1188, 1341, 1513
PspPI	GGNCC	3 cut(s)	760, 1096, 1723
PstNI	CAGNNNCTG	3 cut(s)	1124, 1456, 1568
PsuI	RGATCY	5 cut(s)	916, 1186, 1528, 1551, 2056
PsyI	GACNNNGTC	1 cut(s)	1452
PvuII	CAGCTG	1 cut(s)	1565
RsaI	GTAC	4 cut(s)	349, 550, 592, 1237
RsaNI	GTAC	4 cut(s)	348, 549, 591, 1236
RseI	CAYNNNNRTG	2 cut(s)	810, 959
SatI	GCNGC	6 cut(s)	480, 657, 1119, 1563, 1566, 2010
Sau3AI	GATC	9 cut(s)	916, 1186, 1458, 1528, 1551, 1660, 1705, 1779, 2056
Sau96I	GGNCC	3 cut(s)	760, 1096, 1723
SchI	GAGTC	2 cut(s)	77, 1170
ScrFI	CCNGG	5 cut(s)	266, 396, 661, 714, 1963
SduI	GDGCHC	2 cut(s)	250, 1332
SexAI	ACCWGGT	1 cut(s)	264
SfaNI	GCATC	7 cut(s)	136, 487, 519, 571, 769, 1018, 2023
SmiMI	CAYNNNNRTG	2 cut(s)	810, 959
SseBI	AGGCCT	1 cut(s)	1966
SsiI	CCGC	6 cut(s)	57, 124, 652, 1352, 1606, 1726
SspI	AATATT	1 cut(s)	1600
SspMI	CTAG	6 cut(s)	90, 326, 501, 1419, 1968, 2086
StuI	AGGCCT	1 cut(s)	1966
StyD4I	CCNGG	5 cut(s)	264, 394, 659, 712, 1961
StyI	CCWWGG	1 cut(s)	756
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	2 cut(s)	436, 1576
TaqI	TCGA	4 cut(s)	772, 909, 1461, 2017
TatI	WGTACW	2 cut(s)	347, 548
TfiI	GAWTC	7 cut(s)	77, 172, 280, 292, 418, 923, 1756
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	6 cut(s)	479, 656, 1118, 1562, 1565, 2009
Tsp45I	GTSAC	1 cut(s)	823
TspDTI	ATGAA	9 cut(s)	642, 816, 1004, 1055, 1514, 1808, 1914, 1979, 2007
TspRI	CASTG	1 cut(s)	184
Tth111I	GACNNNGTC	1 cut(s)	1452
VspI	ATTAAT	1 cut(s)	957
XapI	RAATTY	4 cut(s)	686, 891, 1055, 1138
XspI	CTAG	6 cut(s)	90, 326, 501, 1419, 1968, 2086
Zsp2I	ATGCAT	1 cut(s)	2000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.