Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002708

Physical Location & Seq

Genomic Coordinates Forward (+)

57599431 .. 57600529

Gene Structure 1099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTCTCTGCTCCTTTGTGTTTAGTGTTGCTTAATCCACAGATCCAGAATGCATTTTTGAATTGCAGTAGAAAGTTTTTTTTTTCCCTTTTTCAGGCTGTTCACATATTAAGAGTAAACTATGAGCCCACAGAGCGAGACATCCTATATGCTGAAGGTGACACTTCAGCTAATGGGTTGGCTGGTGTGGACTTCTCATTTCCCCAGTCAGAATTTGGATATGAGAATAATACTACTGATCAGCATGACTCATTGCTTAGGTACCAACTTATTAGAGTCGGTGAAGGACTCGGAGAAAGCTGCCAATGGTTGGAGACGTTTAGGGATGCTGGACTGGTCATCTTCTGTCTGTCCTTGAGTGACTATGATCAGTTTTCTGCTGATGGTAACAGCTCTATCACTAACAAGATGTTACAGAGCAGAGCTGTATTTGAAAGCATTGTTACTCATCCAAGCTTTGAGAAGATGAACTGCCTTTTGCTTCTAAGCAAGTTTGATTTGTTTGTGAAAAAGATAGCACGGGTACCGCTAACTCAGTGCGACTGGTTTGATGATTTTAAGCCATTGCTTAGCTATGCTCTGGGTCAACCAGCATATGAGTACGTAGCAGTGAAGTTCAAGAGGCTCTACTCCTCTCTAACCGACAAGAAATTGTATGTTTCTCTGGTGGAGGATTTTGAGCCTGATTCCGTAATTGGAGCCCTTAAATATTCAACAGAGATTTATTTTAAAATGGGACAATTTGATAGACAATTGCTATTTGTCAATTCAAGATTATTCCATTTGTTCATCGATGACATCAGGCCCGCCCCCTCGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0004857 GO:0005095 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009898 GO:0009987 GO:0016020 GO:0016247 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0030234 GO:0030695 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034260 GO:0035639 GO:0036094 GO:0043086 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0048519 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051346 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098772 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

273

Amino Acids

31.27

Weight (kDa)

5.06

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-alpha	PF00503	21 - 232	1.2e-33	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23460
fragaria_vesca	FvH4_1g14590 FvH4_1g14590
malus_domestica	MD00G1067300.v1.1 MD02G1159500.v1.1
prunus_persica	Prupe.7G144400_v2.0.a1
pyrus_communis	pycom02g12580 pycom15g23720
rosa_chinensis	RchiOBHm_Chr1g0367271 RchiOBHm_Chr1g0367281 RchiOBHm_Chr1g0367331 RchiOBHm_Chr2g0103371
rosa_laevigata	RLG00000017231 RLG00000027279 RLG00000027284
rosa_multiflora	Rmu_sc0001555.1_g000003 Rmu_sc0002434.1_g000010 Rmu_sc0011000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00139680 Rroxscaffold_4G00289390 Rroxscaffold_4G00289470 Rroxscaffold_4G00289480
rosa_rugosa	Rorug02G0114700 Rorug06G0002300
rosa_samantha	Rh1AG342600 Rh1BG303200 Rh1BG303600 Rh1BG303700 Rh1CG319500 Rh1CG319700 Rh1DG335600 Rh1DG336000 Rh1DG336100 Rh2AG162700 Rh2BG169800 Rh2CG169900 Rh2DG168800
rosa_wichuraiana	Rw1G030440 Rw2G012780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	261, 523
AccB1I	GGYRCC	2 cut(s)	261, 523
AccB7I	CCANNNNNTGG	1 cut(s)	310
AciI	CCGC	2 cut(s)	527, 807
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	2 cut(s)	150, 174
AfaI	GTAC	3 cut(s)	263, 525, 602
AfiI	CCNNNNNNNGG	2 cut(s)	94, 310
AgsI	TTSAA	5 cut(s)	61, 434, 619, 714, 771
AluBI	AGCT	6 cut(s)	170, 300, 393, 425, 456, 573
AluI	AGCT	6 cut(s)	170, 300, 393, 425, 456, 573
Alw26I	GTCTC	2 cut(s)	132, 308
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	803
ApeKI	GCWGC	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	212
Asp718I	GGTACC	2 cut(s)	261, 523
AspS9I	GGNCC	1 cut(s)	804
AsuHPI	GGTGA	2 cut(s)	170, 293
BanI	GGYRCC	2 cut(s)	261, 523
BanII	GRGCYC	2 cut(s)	129, 703
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	377
BclI	TGATCA	2 cut(s)	238, 367
BcoDI	GTCTC	2 cut(s)	132, 308
BisI	GCNGC	1 cut(s)	301
BlpI	GCTNAGC	1 cut(s)	569
BlsI	GCNGC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	804
BmiI	GGNNCC	3 cut(s)	263, 525, 700
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	316
BmuI	ACTGGG	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	257
Bpu1102I	GCTNAGC	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	376
Bsa29I	ATCGAT	1 cut(s)	792
BsaAI	YACGTR	1 cut(s)	604
BsaJI	CCNNGG	1 cut(s)	813
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 310
Bse1I	ACTGG	3 cut(s)	205, 339, 548
Bse3DI	GCAATG	2 cut(s)	251, 563
BseCI	ATCGAT	1 cut(s)	792
BseDI	CCNNGG	1 cut(s)	813
BseGI	GGATG	3 cut(s)	141, 331, 448
BseLI	CCNNNNNNNGG	2 cut(s)	94, 310
BseMI	GCAATG	2 cut(s)	251, 563
BseMII	CTCAG	1 cut(s)	548
BseNI	ACTGG	3 cut(s)	205, 339, 548
BseRI	GAGGAG	1 cut(s)	622
BseXI	GCAGC	1 cut(s)	287
BshFI	GGCC	1 cut(s)	805
BshNI	GGYRCC	2 cut(s)	261, 523
BshVI	ATCGAT	1 cut(s)	792
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	2 cut(s)	94, 310
BsmAI	GTCTC	2 cut(s)	132, 308
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	750
BsmI	GAATGC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	805
Bsp1286I	GDGCHC	2 cut(s)	129, 703
Bsp143I	GATC	3 cut(s)	42, 238, 367
Bsp1720I	GCTNAGC	1 cut(s)	569
BspACI	CCGC	2 cut(s)	527, 807
BspANI	GGCC	1 cut(s)	805
BspCNI	CTCAG	1 cut(s)	547
BspDI	ATCGAT	1 cut(s)	792
BspLI	GGNNCC	3 cut(s)	263, 525, 700
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	2 cut(s)	261, 523
BsrDI	GCAATG	2 cut(s)	251, 563
BsrI	ACTGG	3 cut(s)	205, 339, 548
BssECI	CCNNGG	1 cut(s)	813
BssMI	GATC	3 cut(s)	42, 238, 367
BstBAI	YACGTR	1 cut(s)	604
BstC8I	GCNNGC	1 cut(s)	807
BstDEI	CTNAG	4 cut(s)	257, 485, 534, 569
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstF5I	GGATG	3 cut(s)	141, 331, 448
BstKTI	GATC	3 cut(s)	45, 241, 370
BstMAI	GTCTC	2 cut(s)	132, 308
BstMBI	GATC	3 cut(s)	42, 238, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstSNI	TACGTA	1 cut(s)	604
BstV1I	GCAGC	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	792
BsuRI	GGCC	1 cut(s)	805
BsuTUI	ATCGAT	1 cut(s)	792
BtsCI	GGATG	3 cut(s)	141, 331, 448
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	2 cut(s)	542, 615
Cac8I	GCNNGC	1 cut(s)	807
Cfr13I	GGNCC	1 cut(s)	804
ClaI	ATCGAT	1 cut(s)	792
Csp6I	GTAC	3 cut(s)	262, 524, 601
CviAII	CATG	1 cut(s)	245
CviQI	GTAC	3 cut(s)	262, 524, 601
DdeI	CTNAG	4 cut(s)	257, 485, 534, 569
DpnI	GATC	3 cut(s)	44, 240, 369
DpnII	GATC	3 cut(s)	42, 238, 367
DraI	TTTAAA	1 cut(s)	730
Eco105I	TACGTA	1 cut(s)	604
Eco24I	GRGCYC	2 cut(s)	129, 703
Eco57I	CTGAAG	2 cut(s)	150, 174
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoT22I	ATGCAT	1 cut(s)	55
EcoT38I	GRGCYC	2 cut(s)	129, 703
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	1 cut(s)	248
FaqI	GGGAC	1 cut(s)	750
FatI	CATG	1 cut(s)	244
FauI	CCCGC	1 cut(s)	814
FauNDI	CATATG	1 cut(s)	595
FbaI	TGATCA	2 cut(s)	238, 367
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	3 cut(s)	128, 338, 435
FriOI	GRGCYC	2 cut(s)	129, 703
Fsp4HI	GCNGC	1 cut(s)	301
GluI	GCNGC	1 cut(s)	301
HaeIII	GGCC	1 cut(s)	805
Hin1II	CATG	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	587
HindII	GTYRAC	1 cut(s)	587
HindIII	AAGCTT	1 cut(s)	454
HinfI	GANTC	4 cut(s)	248, 276, 288, 686
HphI	GGTGA	2 cut(s)	170, 293
Hpy166II	GTNNAC	4 cut(s)	103, 118, 190, 587
Hpy188I	TCNGA	2 cut(s)	211, 293
Hpy188III	TCNNGA	3 cut(s)	46, 619, 771
Hpy8I	GTNNAC	4 cut(s)	103, 118, 190, 587
HpyAV	CCTTC	2 cut(s)	149, 278
HpyCH4IV	ACGT	2 cut(s)	317, 603
HpyCH4V	TGCA	2 cut(s)	53, 66
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	4 cut(s)	257, 485, 534, 569
HpySE526I	ACGT	2 cut(s)	317, 603
Hsp92II	CATG	1 cut(s)	248
KpnI	GGTACC	2 cut(s)	265, 527
Ksp22I	TGATCA	2 cut(s)	238, 367
Kzo9I	GATC	3 cut(s)	42, 238, 367
LmnI	GCTCC	2 cut(s)	16, 698
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	316
MaeII	ACGT	2 cut(s)	317, 603
MaeIII	GTNAC	5 cut(s)	158, 359, 386, 411, 442
MalI	GATC	3 cut(s)	44, 240, 369
MboI	GATC	3 cut(s)	42, 238, 367
MboII	GAAGA	2 cut(s)	334, 475
MfeI	CAATTG	1 cut(s)	752
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	2 cut(s)	129, 703
MluCI	AATT	7 cut(s)	61, 212, 650, 693, 740, 752, 766
MlyI	GAGTC	3 cut(s)	242, 282, 285
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	3 cut(s)	615, 643, 664
Mph1103I	ATGCAT	1 cut(s)	55
MseI	TTAA	5 cut(s)	33, 110, 558, 705, 729
MunI	CAATTG	1 cut(s)	752
Mva1269I	GAATGC	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	133
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	3 cut(s)	42, 238, 367
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	3 cut(s)	263, 525, 700
NmuCI	GTSAC	2 cut(s)	158, 359
NsiI	ATGCAT	1 cut(s)	55
PctI	GAATGC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	686
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	302
PleI	GAGTC	3 cut(s)	242, 282, 284
PpsI	GAGTC	3 cut(s)	242, 282, 284
Ppu21I	YACGTR	1 cut(s)	604
PspN4I	GGNNCC	3 cut(s)	263, 525, 700
PspPI	GGNCC	1 cut(s)	804
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	3 cut(s)	263, 525, 602
RsaNI	GTAC	3 cut(s)	262, 524, 601
SaqAI	TTAA	5 cut(s)	33, 110, 558, 705, 729
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	3 cut(s)	42, 238, 367
Sau96I	GGNCC	1 cut(s)	804
SchI	GAGTC	3 cut(s)	242, 282, 285
SduI	GDGCHC	2 cut(s)	129, 703
SfaNI	GCATC	1 cut(s)	316
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SnaBI	TACGTA	1 cut(s)	604
Sse9I	AATT	7 cut(s)	61, 212, 650, 693, 740, 752, 766
SsiI	CCGC	2 cut(s)	527, 807
SspI	AATATT	1 cut(s)	710
TaiI	ACGT	2 cut(s)	320, 606
TaqI	TCGA	1 cut(s)	792
TasI	AATT	7 cut(s)	61, 212, 650, 693, 740, 752, 766
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	5 cut(s)	33, 110, 558, 705, 729
Tru9I	TTAA	5 cut(s)	33, 110, 558, 705, 729
TscAI	CASTG	2 cut(s)	542, 615
TseFI	GTSAC	2 cut(s)	158, 359
TseI	GCWGC	1 cut(s)	300
Tsp45I	GTSAC	2 cut(s)	158, 359
TspDTI	ATGAA	2 cut(s)	482, 778
TspGWI	ACGGA	1 cut(s)	679
TspRI	CASTG	2 cut(s)	542, 615
Van91I	CCANNNNNTGG	1 cut(s)	310
XagI	CCTNNNNNAGG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.