Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002708

Physical Location & Seq

Genomic Coordinates Forward (+)

57596307 .. 57599429

Gene Structure 3123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59174

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGACAGCAGCTTCAAGTAATTCATATGGGCTCTGTGATGGTAACATGCCTTGCTTGCCAATCTTGAGCTCTGCTACAAAGGAAGGACAGAAACCTTCAGAGGTAATCTCTTCAATGCTTTGTGTTGGGGGTTGCACAAAGATGAATGCTAGCAATGGAAACACAGAAGTTTTCATAAATGGTCGGGAAATAACCAAAGTAGAGCTTCTGATGTTGCAGTTGGTGGGAGTTCAATGTGCTGCTCATGATACACACTTTTGGGTGTATAACGATGGGCGGTACGAATTGGTGGGCCAGAATAGTATAAAAGGATCCATATGGGGCACAGCTGCAACAAAGCTTGTATGTGCTGTCTTGTCACCGCCGGTTCCTTCTAAATCTTCAAATCCTAACATTCTTTTAGTCGGAGATCATGAATCTGTAGCAAGTACTATATTTAAACAGGCCAGGATTCTATATAGAGCTATCCCTTTCTCGGTTGATGAACGTGAAAGTATCAAGTCTACGATACAGAGAAACATCTATGGTTATCTTGGTATACTCCTTGAGGTCCGTGAACGTTTTGAAGAAGAATGTTTGGCTGAGATGAGGAGACAATGTTCTTCTTGTCGAGCAGTTTCCAGTGGGAACAATGCCAAAACCCCTTACTCCATTGGCCCAAAGCTGAAAGCATTCTCTGATTGGCTTCTTATGACCAAGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0004857 GO:0005095 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009898 GO:0009987 GO:0016020 GO:0016247 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0030234 GO:0030695 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034260 GO:0035639 GO:0036094 GO:0043086 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0048519 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051346 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098772 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

234

Amino Acids

25.54

Weight (kDa)

8.34

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-alpha	PF00503	129 - 210	3.5e-10	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23460
fragaria_vesca	FvH4_1g14590 FvH4_1g14590
malus_domestica	MD00G1067300.v1.1 MD02G1159500.v1.1
prunus_persica	Prupe.7G144400_v2.0.a1
pyrus_communis	pycom02g12580 pycom15g23720
rosa_chinensis	RchiOBHm_Chr1g0367271 RchiOBHm_Chr1g0367281 RchiOBHm_Chr1g0367331 RchiOBHm_Chr2g0103371
rosa_laevigata	RLG00000017231 RLG00000027279 RLG00000027284
rosa_multiflora	Rmu_sc0001555.1_g000003 Rmu_sc0002434.1_g000010 Rmu_sc0011000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00139680 Rroxscaffold_4G00289390 Rroxscaffold_4G00289470 Rroxscaffold_4G00289480
rosa_rugosa	Rorug02G0114700 Rorug06G0002300
rosa_samantha	Rh1AG342600 Rh1BG303200 Rh1BG303600 Rh1BG303700 Rh1CG319500 Rh1CG319700 Rh1DG335600 Rh1DG336000 Rh1DG336100 Rh2AG162700 Rh2BG169800 Rh2CG169900 Rh2DG168800
rosa_wichuraiana	Rw1G030440 Rw2G012780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	503, 538
AciI	CCGC	2 cut(s)	277, 362
AclI	AACGTT	1 cut(s)	559
AclWI	GGATC	2 cut(s)	306, 319
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	2 cut(s)	281, 430
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgsI	TTSAA	5 cut(s)	15, 114, 233, 384, 566
AjnI	CCWGG	1 cut(s)	446
AloI	GAACNNNNNNTCC	2 cut(s)	583, 615
AluBI	AGCT	7 cut(s)	11, 69, 205, 329, 340, 464, 664
AluI	AGCT	7 cut(s)	11, 69, 205, 329, 340, 464, 664
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	1 cut(s)	586
AlwI	GGATC	2 cut(s)	306, 319
AoxI	GGCC	3 cut(s)	292, 444, 655
ApeKI	GCWGC	3 cut(s)	8, 239, 329
Asp700I	GAANNNNTTC	1 cut(s)	671
AspS9I	GGNCC	3 cut(s)	292, 550, 656
AsuHPI	GGTGA	1 cut(s)	351
AsuNHI	GCTAGC	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	550
BaeGI	GKGCMC	1 cut(s)	326
BamHI	GGATCC	1 cut(s)	311
BanII	GRGCYC	2 cut(s)	33, 71
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	20, 226, 316
BccI	CCATC	2 cut(s)	32, 266
BciT130I	CCWGG	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	586
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	420
BisI	GCNGC	3 cut(s)	9, 240, 330
BlsI	GCNGC	3 cut(s)	10, 241, 331
BmcAI	AGTACT	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	448
Bme18I	GGWCC	1 cut(s)	550
BmgT120I	GGNCC	3 cut(s)	292, 550, 656
BmiI	GGNNCC	2 cut(s)	313, 369
BmrFI	CCNGG	1 cut(s)	448
BmtI	GCTAGC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BpuEI	CTTGAG	2 cut(s)	85, 566
BsaJI	CCNNGG	1 cut(s)	696
BsaXI	ACNNNNNCTCC	2 cut(s)	583, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	1 cut(s)	621
Bse3DI	GCAATG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	1 cut(s)	696
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	1 cut(s)	604
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	3 cut(s)	20, 226, 316
BshFI	GGCC	3 cut(s)	294, 446, 657
BsiHKAI	GWGCWC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	586
BsmI	GAATGC	2 cut(s)	151, 671
BsnI	GGCC	3 cut(s)	294, 446, 657
Bsp1286I	GDGCHC	3 cut(s)	33, 71, 326
Bsp143I	GATC	2 cut(s)	311, 409
BspACI	CCGC	2 cut(s)	277, 362
BspANI	GGCC	3 cut(s)	294, 446, 657
BspCNI	CTCAG	1 cut(s)	574
BspHI	TCATGA	2 cut(s)	244, 412
BspLI	GGNNCC	2 cut(s)	313, 369
BspOI	GCTAGC	1 cut(s)	153
BspPI	GGATC	2 cut(s)	306, 319
BsrDI	GCAATG	1 cut(s)	160
BsrFI	RCCGGY	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	621
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	2 cut(s)	311, 409
BssNAI	GTATAC	1 cut(s)	539
BssT1I	CCWWGG	1 cut(s)	696
Bst1107I	GTATAC	1 cut(s)	539
Bst2UI	CCWGG	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	56, 151
BstDEI	CTNAG	1 cut(s)	582
BstKTI	GATC	2 cut(s)	314, 412
BstMAI	GTCTC	1 cut(s)	586
BstMBI	GATC	2 cut(s)	311, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	448
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	446
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	20, 226, 316
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BstZ17I	GTATAC	1 cut(s)	539
BsuRI	GGCC	3 cut(s)	294, 446, 657
BtsIMutI	CAGTG	1 cut(s)	628
Cac8I	GCNNGC	2 cut(s)	56, 151
CciI	TCATGA	2 cut(s)	244, 412
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	3 cut(s)	292, 550, 656
Csp6I	GTAC	2 cut(s)	280, 429
CviAII	CATG	3 cut(s)	46, 245, 413
CviQI	GTAC	2 cut(s)	280, 429
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	2 cut(s)	313, 411
DpnII	GATC	2 cut(s)	311, 409
DraI	TTTAAA	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	696
Eco24I	GRGCYC	2 cut(s)	33, 71
Eco47I	GGWCC	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	696
EcoT38I	GRGCYC	2 cut(s)	33, 71
ErhI	CCWWGG	1 cut(s)	696
FaeI	CATG	3 cut(s)	49, 248, 416
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	3 cut(s)	45, 244, 412
FauNDI	CATATG	2 cut(s)	25, 317
FblI	GTMKAC	2 cut(s)	503, 538
Fnu4HI	GCNGC	3 cut(s)	9, 240, 330
FriOI	GRGCYC	2 cut(s)	33, 71
Fsp4HI	GCNGC	3 cut(s)	9, 240, 330
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	3 cut(s)	9, 240, 330
HaeIII	GGCC	3 cut(s)	294, 446, 657
HapII	CCGG	1 cut(s)	365
Hin1II	CATG	3 cut(s)	49, 248, 416
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	2 cut(s)	416, 451
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	1 cut(s)	351
Hpy166II	GTNNAC	3 cut(s)	504, 539, 557
Hpy188I	TCNGA	4 cut(s)	100, 210, 407, 679
Hpy188III	TCNNGA	4 cut(s)	64, 185, 245, 413
Hpy8I	GTNNAC	3 cut(s)	504, 539, 557
HpyAV	CCTTC	3 cut(s)	77, 105, 381
HpyCH4IV	ACGT	2 cut(s)	487, 559
HpyCH4V	TGCA	3 cut(s)	135, 217, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	1 cut(s)	582
HpySE526I	ACGT	2 cut(s)	487, 559
Hsp92II	CATG	3 cut(s)	49, 248, 416
Kzo9I	GATC	2 cut(s)	311, 409
LpnPI	CCDG	6 cut(s)	308, 378, 428, 433, 460, 634
Lsp1109I	GCAGC	3 cut(s)	20, 226, 316
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	2 cut(s)	487, 559
MaeIII	GTNAC	2 cut(s)	41, 357
MalI	GATC	2 cut(s)	313, 411
MboI	GATC	2 cut(s)	311, 409
MboII	GAAGA	5 cut(s)	102, 372, 578, 581, 594
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	3 cut(s)	33, 71, 326
MluCI	AATT	2 cut(s)	19, 284
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	3 cut(s)	94, 541, 582
MroXI	GAANNNNTTC	1 cut(s)	671
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	448
Mva1269I	GAATGC	2 cut(s)	151, 671
MvaI	CCWGG	1 cut(s)	448
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeI	CATATG	2 cut(s)	25, 317
NdeII	GATC	2 cut(s)	311, 409
NheI	GCTAGC	1 cut(s)	149
NlaIII	CATG	3 cut(s)	49, 248, 416
NlaIV	GGNNCC	2 cut(s)	313, 369
NmuCI	GTSAC	1 cut(s)	357
NspI	RCATGY	1 cut(s)	49
PagI	TCATGA	2 cut(s)	244, 412
PctI	GAATGC	2 cut(s)	151, 671
PdmI	GAANNNNTTC	1 cut(s)	671
PfeI	GAWTC	2 cut(s)	416, 451
PkrI	GCNGC	3 cut(s)	10, 241, 331
Psp124BI	GAGCTC	1 cut(s)	71
Psp1406I	AACGTT	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	2 cut(s)	313, 369
PspPI	GGNCC	3 cut(s)	292, 550, 656
PsuI	RGATCY	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	281, 430
RsaNI	GTAC	2 cut(s)	280, 429
RseI	CAYNNNNRTG	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	3 cut(s)	9, 240, 330
Sau3AI	GATC	2 cut(s)	311, 409
Sau96I	GGNCC	3 cut(s)	292, 550, 656
ScaI	AGTACT	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	448
SduI	GDGCHC	3 cut(s)	33, 71, 326
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	550
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	2 cut(s)	64, 545
SmoI	CTYRAG	2 cut(s)	64, 545
Sse9I	AATT	2 cut(s)	19, 284
SsiI	CCGC	2 cut(s)	277, 362
SspMI	CTAG	1 cut(s)	150
SstI	GAGCTC	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	446
StyI	CCWWGG	1 cut(s)	696
TaiI	ACGT	2 cut(s)	490, 562
TaqI	TCGA	1 cut(s)	610
TasI	AATT	2 cut(s)	19, 284
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	2 cut(s)	416, 451
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	1 cut(s)	357
TseI	GCWGC	3 cut(s)	8, 239, 329
Tsp45I	GTSAC	1 cut(s)	357
TspDTI	ATGAA	5 cut(s)	12, 158, 163, 429, 498
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	1 cut(s)	628
VpaK11BI	GGWCC	1 cut(s)	550
XceI	RCATGY	1 cut(s)	49
XmiI	GTMKAC	2 cut(s)	503, 538
XmnI	GAANNNNTTC	1 cut(s)	671
XspI	CTAG	1 cut(s)	150
ZrmI	AGTACT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.