Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002708

Physical Location & Seq

Genomic Coordinates Reverse (-)

10292260 .. 10295496

Gene Structure 3237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027284

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGACAGCAGCTTCAAGTAATTCATATGGGCTCTGTGATGGTAACATGCCTTGCTTGCCAATCTTGAGCTCTGCTACAAAGGAAGGACAGAAACCTTCAGAGGTAATCTCTTCAATGCTTTGTGTTGGGGGTTGCATAAAGATGAATGCTAGCAATGGAAACACAGAAGTTTTCATAAATGGTCGGGAAATAACCAAAGTAGAGCTTCTGATGTTGCAGTTGGTGGGAGTTCAATGTGCTGCTGATACACACTTTTGGGTGTATGACGATGGGTGGTATGAATTGGTGGGCCATAATAGTATAAAAGGATATGGGGCACAGCTGCAACAAAGCTTGTATAGAACTCAGAACATTCTTTTAGTTGGAGATCATGAATCTGTAGCAAGTAATATATTTAAACAGGCCAGGATTCTATATAGAGCTATCCCTTTCTCGGTAGATGAACGTGAAAGTATCAAGTTTACGATACAGAGAAACATCTATGGTTATCTTGGTATACTCCTTGAGGTCCGTGAACATTTTGAAGAAGAATGTTTGGCTGAGATGAGGAGACAATGTTCTTCTAGTCGAGCAGTTTCCAGTGGGAACAATGCCAAAACCCTTTACTCCATTGGCCCAAAGCTGAAAGCATTCTCTGATTGGCTTCTTAAGACTAAGGCAGCTGCTACTTATTTCATAAAGAGGGCTGTTCACATATTAAGAGTAATCTATGAGCCCACAGATCGACACATCCTATATGCTGAAGGTGACACCTCAGCTAATGGGACTTCAGCTAATGGGTTGGCTTGCGTGGACTTCTCATTTCCCGAGTCAGAATTTGGATATGAGAATAATACTACTGATCAGCATGACTCATTGCTTAGGTACAAAGTTATTGGAGTCAGTGAAGGACTCGGAGAAAGCTGCCAATGGTTGGAGACGTTTGGGGATGCTGGACTAGTGGACTGGTCATCTTCTGTCTGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0004857 GO:0005095 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009898 GO:0009987 GO:0016020 GO:0016247 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0030234 GO:0030695 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034260 GO:0035639 GO:0036094 GO:0043086 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0048519 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051346 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098772 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

323

Amino Acids

35.64

Weight (kDa)

5.34

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-alpha	PF00503	113 - 311	1.1e-10	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23460
fragaria_vesca	FvH4_1g14590 FvH4_1g14590
malus_domestica	MD00G1067300.v1.1 MD02G1159500.v1.1
prunus_persica	Prupe.7G144400_v2.0.a1
pyrus_communis	pycom02g12580 pycom15g23720
rosa_chinensis	RchiOBHm_Chr1g0367271 RchiOBHm_Chr1g0367281 RchiOBHm_Chr1g0367331 RchiOBHm_Chr2g0103371
rosa_laevigata	RLG00000017231 RLG00000027279 RLG00000027284
rosa_multiflora	Rmu_sc0001555.1_g000003 Rmu_sc0002434.1_g000010 Rmu_sc0011000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00139680 Rroxscaffold_4G00289390 Rroxscaffold_4G00289470 Rroxscaffold_4G00289480
rosa_rugosa	Rorug02G0114700 Rorug06G0002300
rosa_samantha	Rh1AG342600 Rh1BG303200 Rh1BG303600 Rh1BG303700 Rh1CG319500 Rh1CG319700 Rh1DG335600 Rh1DG336000 Rh1DG336100 Rh2AG162700 Rh2BG169800 Rh2CG169900 Rh2DG168800
rosa_wichuraiana	Rw1G030440 Rw2G012780

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	913
AccI	GTMKAC	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	815
AcuI	CTGAAG	3 cut(s)	81, 753, 762
AfaI	GTAC	1 cut(s)	866
AfiI	CCNNNNNNNGG	2 cut(s)	433, 913
AflII	CTTAAG	1 cut(s)	647
AgsI	TTSAA	4 cut(s)	15, 114, 233, 524
AhlI	ACTAGT	1 cut(s)	937
AjnI	CCWGG	1 cut(s)	404
AloI	GAACNNNNNNTCC	2 cut(s)	541, 573
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	2 cut(s)	544, 911
Ama87I	CYCGRG	1 cut(s)	806
AoxI	GGCC	3 cut(s)	289, 402, 613
ApeKI	GCWGC	6 cut(s)	8, 239, 322, 659, 662, 903
ApoI	RAATTY	1 cut(s)	815
Asp700I	GAANNNNTTC	1 cut(s)	629
AspS9I	GGNCC	3 cut(s)	289, 508, 614
AsuHPI	GGTGA	1 cut(s)	758
AsuNHI	GCTAGC	1 cut(s)	149
AvaI	CYCGRG	1 cut(s)	806
AvaII	GGWCC	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	319
BanII	GRGCYC	3 cut(s)	33, 71, 717
Bbv12I	GWGCWC	1 cut(s)	71
BbvCI	CCTCAGC	1 cut(s)	754
BbvI	GCAGC	6 cut(s)	20, 226, 309, 649, 671, 890
BccI	CCATC	2 cut(s)	32, 263
BciT130I	CCWGG	1 cut(s)	406
BclI	TGATCA	1 cut(s)	841
BcoDI	GTCTC	2 cut(s)	544, 911
BcuI	ACTAGT	1 cut(s)	937
BfaI	CTAG	3 cut(s)	150, 564, 938
BfmI	CTRYAG	1 cut(s)	378
BfrI	CTTAAG	1 cut(s)	647
BisI	GCNGC	6 cut(s)	9, 240, 323, 660, 663, 904
BlsI	GCNGC	6 cut(s)	10, 241, 324, 661, 664, 905
Bme1390I	CCNGG	1 cut(s)	406
Bme18I	GGWCC	1 cut(s)	508
BmeT110I	CYCGRG	1 cut(s)	806
BmgT120I	GGNCC	3 cut(s)	289, 508, 614
BmrFI	CCNGG	1 cut(s)	406
BmsI	GCATC	1 cut(s)	919
BmtI	GCTAGC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
Bpu10I	CCTNAGC	2 cut(s)	754, 860
BpuEI	CTTGAG	2 cut(s)	85, 524
BsaXI	ACNNNNNCTCC	2 cut(s)	541, 571
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 913
Bse1I	ACTGG	2 cut(s)	579, 950
Bse3DI	GCAATG	2 cut(s)	160, 854
BseBI	CCWGG	1 cut(s)	406
BseGI	GGATG	2 cut(s)	729, 934
BseLI	CCNNNNNNNGG	2 cut(s)	433, 913
BseMI	GCAATG	2 cut(s)	160, 854
BseMII	CTCAG	3 cut(s)	359, 531, 768
BseNI	ACTGG	2 cut(s)	579, 950
BseRI	GAGGAG	1 cut(s)	562
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	6 cut(s)	20, 226, 309, 649, 671, 890
BshFI	GGCC	3 cut(s)	291, 404, 615
BsiHKAI	GWGCWC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	806
BslFI	GGGAC	1 cut(s)	778
BslI	CCNNNNNNNGG	2 cut(s)	433, 913
BsmAI	GTCTC	2 cut(s)	544, 911
BsmBI	CGTCTC	1 cut(s)	911
BsmFI	GGGAC	1 cut(s)	778
BsmI	GAATGC	2 cut(s)	151, 629
BsnI	GGCC	3 cut(s)	291, 404, 615
BsoBI	CYCGRG	1 cut(s)	806
Bsp1286I	GDGCHC	4 cut(s)	33, 71, 319, 717
Bsp143I	GATC	3 cut(s)	367, 721, 841
BspANI	GGCC	3 cut(s)	291, 404, 615
BspCNI	CTCAG	3 cut(s)	358, 532, 767
BspHI	TCATGA	1 cut(s)	370
BspOI	GCTAGC	1 cut(s)	153
BspTI	CTTAAG	1 cut(s)	647
BsrDI	GCAATG	2 cut(s)	160, 854
BsrI	ACTGG	2 cut(s)	579, 950
BssMI	GATC	3 cut(s)	367, 721, 841
BssNAI	GTATAC	1 cut(s)	497
Bst1107I	GTATAC	1 cut(s)	497
Bst2UI	CCWGG	1 cut(s)	406
Bst6I	CTCTTC	1 cut(s)	115
BstAFI	CTTAAG	1 cut(s)	647
BstC8I	GCNNGC	3 cut(s)	56, 151, 787
BstDEI	CTNAG	5 cut(s)	345, 540, 654, 754, 860
BstF5I	GGATG	2 cut(s)	729, 934
BstKTI	GATC	3 cut(s)	370, 724, 844
BstMAI	GTCTC	2 cut(s)	544, 911
BstMBI	GATC	3 cut(s)	367, 721, 841
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	406
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	404
BstSFI	CTRYAG	1 cut(s)	378
BstSLI	GKGCMC	1 cut(s)	319
BstV1I	GCAGC	6 cut(s)	20, 226, 309, 649, 671, 890
BstZ17I	GTATAC	1 cut(s)	497
BsuRI	GGCC	3 cut(s)	291, 404, 615
BtsCI	GGATG	2 cut(s)	729, 934
BtsIMutI	CAGTG	2 cut(s)	586, 889
Cac8I	GCNNGC	3 cut(s)	56, 151, 787
CciI	TCATGA	1 cut(s)	370
Cfr13I	GGNCC	3 cut(s)	289, 508, 614
Csp6I	GTAC	1 cut(s)	865
CviAII	CATG	3 cut(s)	46, 371, 848
CviQI	GTAC	1 cut(s)	865
DdeI	CTNAG	5 cut(s)	345, 540, 654, 754, 860
DpnI	GATC	3 cut(s)	369, 723, 843
DpnII	GATC	3 cut(s)	367, 721, 841
DraI	TTTAAA	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	69
Eco24I	GRGCYC	3 cut(s)	33, 71, 717
Eco47I	GGWCC	1 cut(s)	508
Eco53kI	GAGCTC	1 cut(s)	69
Eco57I	CTGAAG	3 cut(s)	81, 753, 762
Eco88I	CYCGRG	1 cut(s)	806
EcoICRI	GAGCTC	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	404
EcoT38I	GRGCYC	3 cut(s)	33, 71, 717
Esp3I	CGTCTC	1 cut(s)	911
FaeI	CATG	3 cut(s)	49, 374, 851
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	778
FatI	CATG	3 cut(s)	45, 370, 847
FauNDI	CATATG	1 cut(s)	25
FbaI	TGATCA	1 cut(s)	841
FblI	GTMKAC	1 cut(s)	496
Fnu4HI	GCNGC	6 cut(s)	9, 240, 323, 660, 663, 904
FokI	GGATG	2 cut(s)	716, 941
FriOI	GRGCYC	3 cut(s)	33, 71, 717
Fsp4HI	GCNGC	6 cut(s)	9, 240, 323, 660, 663, 904
FspBI	CTAG	3 cut(s)	150, 564, 938
GluI	GCNGC	6 cut(s)	9, 240, 323, 660, 663, 904
HaeIII	GGCC	3 cut(s)	291, 404, 615
Hin1II	CATG	3 cut(s)	49, 374, 851
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	6 cut(s)	374, 409, 809, 851, 879, 891
HphI	GGTGA	1 cut(s)	758
Hpy166II	GTNNAC	6 cut(s)	462, 497, 515, 691, 793, 943
Hpy188I	TCNGA	6 cut(s)	100, 210, 348, 637, 814, 896
Hpy188III	TCNNGA	4 cut(s)	64, 185, 371, 806
Hpy8I	GTNNAC	6 cut(s)	462, 497, 515, 691, 793, 943
HpyAV	CCTTC	4 cut(s)	77, 105, 737, 881
HpyCH4IV	ACGT	2 cut(s)	445, 920
HpyCH4V	TGCA	3 cut(s)	135, 217, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	5 cut(s)	345, 540, 654, 754, 860
HpySE526I	ACGT	2 cut(s)	445, 920
Hsp92II	CATG	3 cut(s)	49, 374, 851
Ksp22I	TGATCA	1 cut(s)	841
Kzo9I	GATC	3 cut(s)	367, 721, 841
LpnPI	CCDG	6 cut(s)	386, 391, 418, 592, 918, 931
Lsp1109I	GCAGC	6 cut(s)	20, 226, 309, 649, 671, 890
LweI	GCATC	1 cut(s)	919
MaeI	CTAG	3 cut(s)	150, 564, 938
MaeII	ACGT	2 cut(s)	445, 920
MaeIII	GTNAC	2 cut(s)	41, 746
MalI	GATC	3 cut(s)	369, 723, 843
MboI	GATC	3 cut(s)	367, 721, 841
MboII	GAAGA	5 cut(s)	102, 536, 539, 552, 945
MhlI	GDGCHC	4 cut(s)	33, 71, 319, 717
MluCI	AATT	3 cut(s)	19, 281, 815
MlyI	GAGTC	4 cut(s)	818, 845, 885, 888
MmeI	TCCRAC	2 cut(s)	343, 894
MnlI	CCTC	5 cut(s)	94, 499, 540, 675, 763
MroXI	GAANNNNTTC	1 cut(s)	629
MseI	TTAA	3 cut(s)	396, 648, 698
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	2 cut(s)	322, 662
MspCI	CTTAAG	1 cut(s)	647
MspR9I	CCNGG	1 cut(s)	406
Mva1269I	GAATGC	2 cut(s)	151, 629
MvaI	CCWGG	1 cut(s)	406
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	3 cut(s)	367, 721, 841
NheI	GCTAGC	1 cut(s)	149
NlaIII	CATG	3 cut(s)	49, 374, 851
NmuCI	GTSAC	1 cut(s)	746
NspI	RCATGY	1 cut(s)	49
PagI	TCATGA	1 cut(s)	370
PctI	GAATGC	2 cut(s)	151, 629
PdmI	GAANNNNTTC	1 cut(s)	629
PfeI	GAWTC	2 cut(s)	374, 409
PflMI	CCANNNNNTGG	1 cut(s)	913
PkrI	GCNGC	6 cut(s)	10, 241, 324, 661, 664, 905
PleI	GAGTC	4 cut(s)	817, 845, 885, 887
PpsI	GAGTC	4 cut(s)	817, 845, 885, 887
Psp124BI	GAGCTC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	404
PspPI	GGNCC	3 cut(s)	289, 508, 614
PvuII	CAGCTG	2 cut(s)	322, 662
RsaI	GTAC	1 cut(s)	866
RsaNI	GTAC	1 cut(s)	865
RseI	CAYNNNNRTG	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	71
SaqAI	TTAA	3 cut(s)	396, 648, 698
SatI	GCNGC	6 cut(s)	9, 240, 323, 660, 663, 904
Sau3AI	GATC	3 cut(s)	367, 721, 841
Sau96I	GGNCC	3 cut(s)	289, 508, 614
SchI	GAGTC	4 cut(s)	818, 845, 885, 888
ScrFI	CCNGG	1 cut(s)	406
SduI	GDGCHC	4 cut(s)	33, 71, 319, 717
SfaNI	GCATC	1 cut(s)	919
SfcI	CTRYAG	1 cut(s)	378
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	3 cut(s)	64, 503, 647
SmoI	CTYRAG	3 cut(s)	64, 503, 647
SpeI	ACTAGT	1 cut(s)	937
Sse9I	AATT	3 cut(s)	19, 281, 815
SspMI	CTAG	3 cut(s)	150, 564, 938
SstI	GAGCTC	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	404
TaiI	ACGT	2 cut(s)	448, 923
TaqI	TCGA	2 cut(s)	568, 724
TasI	AATT	3 cut(s)	19, 281, 815
TfiI	GAWTC	2 cut(s)	374, 409
Tru1I	TTAA	3 cut(s)	396, 648, 698
Tru9I	TTAA	3 cut(s)	396, 648, 698
TscAI	CASTG	2 cut(s)	586, 889
TseFI	GTSAC	1 cut(s)	746
TseI	GCWGC	6 cut(s)	8, 239, 322, 659, 662, 903
Tsp45I	GTSAC	1 cut(s)	746
TspDTI	ATGAA	7 cut(s)	12, 158, 163, 294, 387, 456, 664
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	2 cut(s)	586, 889
Van91I	CCANNNNNTGG	1 cut(s)	913
Vha464I	CTTAAG	1 cut(s)	647
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	1 cut(s)	815
XceI	RCATGY	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	496
XmnI	GAANNNNTTC	1 cut(s)	629
XspI	CTAG	3 cut(s)	150, 564, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.