Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002708

Physical Location & Seq

Genomic Coordinates Reverse (-)

78040425 .. 78045530

Gene Structure 5106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00139680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2775 bp

ATGCCGCCCGAGGCGGAGACGGCGGACGAGGGGGCGCAGTACTCGTTTGCTATGGAGTATAAAGGTCCTCCGGTGAGTTACGATCTTCCGAAGGCGGTTCCGATCAACGTCGACAGAATCCCCGTGGCGGCTGTCGTCGGACAGGTGCCTATTCCGGATAAGTTGTCGTTGCCGGTGGTCCAGCCGGTTCTGCCGCCCGGTTCGCTGATGAAAACGTTCTCCAAAGAGCTCAAGGCTTCCCAGTCGACGGTGTCTCCGACCTCGGTGATAGCTTTCAATCGGAGAAGTGAGGACGACACGACGAAGGAGTTGGAAGGGTCGGAATCGGCGACGGTTTCGCCGACGTCGGTGATTGGGTTCGAGGAGAGAGCTGAGGAGAGGGGGGCCGGGTGTGGTGCTTTGTCCGGAGAATTGAGTAGCTCCGGCGGGTTGGAGTTTTCGAACGGGTTGAATTACGGGTCGGGTGAGCTGTCCGATGTGAATAATGGTAGCTGGGCTTGGAGCGGAGGAGCATTGACGGCTCCGAGTGGTGGGAAGGAGAGTTTGGATTTGAATCAACCCGAACCCGATTGGGCTTCTTCCGAGTCCGTTTTGAGCTTGGACTATCCTTCTTCTCGGGTTTCCTCCACCAAGGCAGTGGATTGCGATGTAAAACGACCCGCTGTGGTGACGTTTCGGGACATTGAATCTGATGATGATGTTGGTGAGGAAGATGAGGCTGAGGTTGTGCCGGTGAAGCGGGAGCCTCAGAGCAAAGGAAAGAAGAAGTCTTGTTATAGATGTCTGAAGGGGACTAGGTTCACTGAGAAGGAGGTGTGCATTGTTTGTGACGCCAAGTACTGTAGTAGTTGTGTTCTGAGAGCTATGGGGTCGATGCCGGAGGGCCGAAAATGTGTTACTTGTATTGGATTTCCTATTGATGAGAACAAAAGAGGGTGCTTGGGGAAGTGCTCTAGGATGCTCAAGCGGCTGCTGAATGATTTGGAGGTTCGGCAGGTGATGAAAGCCGAAAAGTTTTGTGAAGCAAATCAGCTACCGCCGAATTACATTTGTGTGAATGGACAGCCTCTTTGTCATGAGGAGCTTGTTGTGTTACAGACCTGCTCAAACCCTCCGAAGAAGCTAAAACCAGGAAACTATTGGTATGATAAAGTTTCTGGACTTTGGGGAAAGGAAGGACAGAAGCCTTCGAAGGTAATCAGTCCCCATCTTAGTGTTGGGGGTCCCATCAAGGCAAATGCTAGTAATGGAAACACACAGGTTTTTATCAATGGCCGGGAAATTACCAAAGTTGAGCTTCGGATGTTACAGTTGGCAGGAGTTCAGTGTGCTGGTAACCCACACTTTTGGGTGAATGAGGATGGATCATACCAAGAGGAGGGCCAGAAAAATACTAAAGGATACATATGGGGAAAGGCTGGAACCAAGCTTGTTTGTGCTGTCTTGTCACTGCCAGTGCCTTCTAAATCTTCGAATCCTTGTGGAGAACCCCTGAGCTATGTTGGTAGCAGAGTCGTCCCTGATTACATTGAGCAGAGAATACTTCAGAAAATTCTTTTAGTTGGATATAATGGATCCGGAACAAGTACTATATTCAAACAGGCCAAGATTCTATATAAAGCTATCCCTTTCTCGGAAGATGAGCGTGAAAATATCAAGTTTACAATACAGAGCAATGTATATGGCTATCTTGGTATACTACTGGAGGGACGTGAGCGTTTTGAAGAGGAAAGTTTGGCTGAGATCAGAAATCAATGTTCTTCTAGTCAAACAGATGCGAGAGGGAACAACGACAAAACTCTTTACTCCATTGGCCAGAGACTGAAAGCATTTTCTGATTGGCTTCTCAAGATAATGGTGTCAGGTGATTTGGAAGCCATTTTCCCAGCTGCTACCCGTGAATATGCACCATTGGTTGAGGAGTTGTGGAATGATTCAGCCATTCAAGCTACATTCAAGCGGAGAAGTGAATTGGAAATGTTACCTGGTGTTGCTACTTATTTCATAGAGAGGGCTGTTGACATATTAAGAGTAGACTATGAGCCCTCGGATCTGGATATTCTATACGCTGAAGGTGTTACTTCATCTAATGGGCTTGCTTGTGTAGACTTCTCATTTCCACCGTCGGCATCTGAAGATAACATCAATCATAATAATGATCAGCAGGACTCTTTGCTTAGGTACCAACTGATTAGAGTAAATGCAAGAGGACTTGGAGAAAACTGCAAATGGTTGGATATGTTTGAAGATGTTGGAATGGTCATATTCTGTGTATCCTTGAGTGACTATGATCAGTTTTCTGTGGATGGTAGTGGGTCCTTTTCAAACAAGATGCTACAGACCAGAAGTTTCTTTGAAAGCATCATTACTCATCCAACATTTGAACATATGGACTTCCTTTTGATTCTAAACAAGTTTGATGTGCTTGAGGAAAAGGTAGAAAGGGTACCACTTACTCAGTGTGACTGGTTTGATGATTTCCATCCAGTGGTTAGCCGTCATCGGTCCAGCAGCAACAACAGCAGCAACAACATAAATAGTAGCCCCTCACTGGGTCATCTAGCAGCTCATTATATTGCAGTAAAGTTCAAGAGGCTATATTCTTCTCTAACCGGAAAGAAACTGTACGTTTCTCTGGTAAAAGGGTTGCAGCCTAATAGCGTAGATGCAGCTCTTAAATATTCAAGGGAGATTTTAAAATGGGATGAAGAGAGGGGCAACTTCAGCTTTGATTACTCTGTCTATAGCACTGAGGCAAGCTCTTATTCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0004857 GO:0005095 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009898 GO:0009987 GO:0016020 GO:0016247 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0030234 GO:0030695 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034260 GO:0035639 GO:0036094 GO:0043086 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0048519 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051346 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098772 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

924

Amino Acids

102.1

Weight (kDa)

5.25

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-alpha	PF00503	516 - 897	1.2e-63	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23460
fragaria_vesca	FvH4_1g14590 FvH4_1g14590
malus_domestica	MD00G1067300.v1.1 MD02G1159500.v1.1
prunus_persica	Prupe.7G144400_v2.0.a1
pyrus_communis	pycom02g12580 pycom15g23720
rosa_chinensis	RchiOBHm_Chr1g0367271 RchiOBHm_Chr1g0367281 RchiOBHm_Chr1g0367331 RchiOBHm_Chr2g0103371
rosa_laevigata	RLG00000017231 RLG00000027279 RLG00000027284
rosa_multiflora	Rmu_sc0001555.1_g000003 Rmu_sc0002434.1_g000010 Rmu_sc0011000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00139680 Rroxscaffold_4G00289390 Rroxscaffold_4G00289470 Rroxscaffold_4G00289480
rosa_rugosa	Rorug02G0114700 Rorug06G0002300
rosa_samantha	Rh1AG342600 Rh1BG303200 Rh1BG303600 Rh1BG303700 Rh1CG319500 Rh1CG319700 Rh1DG335600 Rh1DG336000 Rh1DG336100 Rh2AG162700 Rh2BG169800 Rh2CG169900 Rh2DG168800
rosa_wichuraiana	Rw1G030440 Rw2G012780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	985
AatII	GACGTC	1 cut(s)	347
Acc36I	ACCTGC	2 cut(s)	985, 1109
Acc65I	GGTACC	2 cut(s)	2181, 2446
AccB1I	GGYRCC	3 cut(s)	145, 2181, 2446
AccB7I	CCANNNNNTGG	1 cut(s)	2488
AccBSI	CCGCTC	1 cut(s)	504
AccI	GTMKAC	5 cut(s)	111, 245, 1696, 2034, 2106
AccIII	TCCGGA	3 cut(s)	154, 404, 1577
AclI	AACGTT	1 cut(s)	215
AclWI	GGATC	4 cut(s)	1372, 1569, 1582, 2058
AcoI	YGGCCR	2 cut(s)	1273, 1813
AcsI	RAATTY	1 cut(s)	1551
AcuI	CTGAAG	5 cut(s)	806, 1529, 2091, 2154, 2707
AcyI	GRCGYC	2 cut(s)	344, 831
AfaI	GTAC	6 cut(s)	41, 839, 1588, 2183, 2448, 2627
AfiI	CCNNNNNNNGG	8 cut(s)	127, 247, 530, 1378, 1633, 2488, 2551, 2552
AjiI	CACGTC	1 cut(s)	1712
AjnI	CCWGG	2 cut(s)	1129, 1984
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
Alw21I	GWGCWC	2 cut(s)	231, 953
Alw26I	GTCTC	3 cut(s)	11, 258, 1813
AlwI	GGATC	4 cut(s)	1372, 1569, 1582, 2058
AlwNI	CAGNNNCTG	1 cut(s)	1822
Ama87I	CYCGRG	2 cut(s)	8, 615
Aor13HI	TCCGGA	3 cut(s)	154, 404, 1577
AoxI	GGCC	6 cut(s)	384, 883, 1273, 1381, 1602, 1813
ApeKI	GCWGC	7 cut(s)	970, 1889, 2511, 2523, 2564, 2650, 2669
ApoI	RAATTY	1 cut(s)	1551
ArsI	GACNNNNNNTTYG	2 cut(s)	1053, 1085
Asp700I	GAANNNNTTC	1 cut(s)	215
Asp718I	GGTACC	2 cut(s)	2181, 2446
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	8 cut(s)	65, 178, 384, 883, 1223, 1381, 2316, 2505
AsuC2I	CCSGG	3 cut(s)	198, 388, 1277
AsuII	TTCGAA	3 cut(s)	440, 1190, 1472
AvaI	CYCGRG	2 cut(s)	8, 615
AvaII	GGWCC	5 cut(s)	65, 178, 1223, 2316, 2505
BalI	TGGCCA	1 cut(s)	1815
BamHI	GGATCC	1 cut(s)	1574
BanI	GGYRCC	3 cut(s)	145, 2181, 2446
BanII	GRGCYC	2 cut(s)	231, 2046
Bbv12I	GWGCWC	2 cut(s)	231, 953
BbvCI	CCTCAGC	2 cut(s)	372, 720
BbvI	GCAGC	7 cut(s)	957, 1876, 2523, 2535, 2576, 2662, 2681
BccI	CCATC	5 cut(s)	1215, 1235, 1355, 2300, 2490
BceAI	ACGGC	3 cut(s)	36, 534, 2481
BciT130I	CCWGG	2 cut(s)	1131, 1986
BciVI	GTATCC	2 cut(s)	1394, 2284
BclI	TGATCA	2 cut(s)	2158, 2290
BcnI	CCSGG	3 cut(s)	198, 388, 1277
BcoDI	GTCTC	3 cut(s)	11, 258, 1813
BfaI	CTAG	5 cut(s)	795, 954, 1242, 1764, 2561
BfmI	CTRYAG	3 cut(s)	841, 2336, 2743
BfuAI	ACCTGC	2 cut(s)	985, 1109
BfuI	GTATCC	2 cut(s)	1394, 2284
BmcAI	AGTACT	3 cut(s)	41, 839, 1588
Bme1390I	CCNGG	5 cut(s)	198, 388, 1131, 1277, 1986
Bme18I	GGWCC	5 cut(s)	65, 178, 1223, 2316, 2505
BmeT110I	CYCGRG	2 cut(s)	8, 615
BmgBI	CACGTC	1 cut(s)	1712
BmgT120I	GGNCC	8 cut(s)	65, 178, 384, 883, 1223, 1381, 2316, 2505
BmrFI	CCNGG	5 cut(s)	198, 388, 1131, 1277, 1986
BmrI	ACTGGG	2 cut(s)	235, 2561
BmsI	GCATC	7 cut(s)	864, 948, 1765, 2138, 2322, 2370, 2656
BmuI	ACTGGG	2 cut(s)	235, 2561
BplI	GAGNNNNNCTC	1 cut(s)	2744
BpmI	CTGGAG	1 cut(s)	1724
Bpu10I	CCTNAGC	4 cut(s)	372, 720, 1493, 2177
Bpu14I	TTCGAA	3 cut(s)	440, 1190, 1472
BpuEI	CTTGAG	5 cut(s)	215, 947, 1832, 2299, 2447
BpuMI	CCSGG	3 cut(s)	198, 388, 1277
BsaBI	GATNNNNATC	2 cut(s)	552, 2481
BsaHI	GRCGYC	2 cut(s)	344, 831
BsaJI	CCNNGG	5 cut(s)	9, 123, 261, 630, 2046
BsaWI	WCCGGW	5 cut(s)	70, 154, 404, 1577, 2612
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	8 cut(s)	127, 247, 530, 1378, 1633, 2488, 2551, 2552
Bse118I	RCCGGY	3 cut(s)	172, 184, 730
Bse1I	ACTGG	6 cut(s)	241, 1454, 1707, 2471, 2486, 2556
Bse3DI	GCAATG	1 cut(s)	1681
Bse8I	GATNNNNATC	2 cut(s)	552, 2481
BseAI	TCCGGA	3 cut(s)	154, 404, 1577
BseBI	CCWGG	2 cut(s)	1131, 1986
BseDI	CCNNGG	5 cut(s)	9, 123, 261, 630, 2046
BseGI	GGATG	7 cut(s)	963, 1308, 1366, 2311, 2371, 2482, 2710
BseJI	GATNNNNATC	2 cut(s)	552, 2481
BseLI	CCNNNNNNNGG	8 cut(s)	127, 247, 530, 1378, 1633, 2488, 2551, 2552
BseMI	GCAATG	1 cut(s)	1681
BseMII	CTCAG	9 cut(s)	363, 711, 761, 795, 848, 1484, 1731, 2471, 2742
BseNI	ACTGG	6 cut(s)	241, 1454, 1707, 2471, 2486, 2556
BseRI	GAGGAG	6 cut(s)	377, 389, 522, 1094, 1391, 1934
BseXI	GCAGC	7 cut(s)	957, 1876, 2523, 2535, 2576, 2662, 2681
BseYI	CCCAGC	2 cut(s)	492, 1885
BshFI	GGCC	6 cut(s)	386, 885, 1275, 1383, 1604, 1815
BshNI	GGYRCC	3 cut(s)	145, 2181, 2446
BsiHKAI	GWGCWC	2 cut(s)	231, 953
BsiHKCI	CYCGRG	2 cut(s)	8, 615
BslFI	GGGAC	6 cut(s)	692, 805, 1188, 1209, 1502, 1722
BslI	CCNNNNNNNGG	8 cut(s)	127, 247, 530, 1378, 1633, 2488, 2551, 2552
BsmAI	GTCTC	3 cut(s)	11, 258, 1813
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	6 cut(s)	692, 805, 1188, 1209, 1502, 1722
BsnI	GGCC	6 cut(s)	386, 885, 1275, 1383, 1604, 1815
BsoBI	CYCGRG	2 cut(s)	8, 615
Bsp119I	TTCGAA	3 cut(s)	440, 1190, 1472
Bsp1286I	GDGCHC	3 cut(s)	231, 953, 2046
Bsp13I	TCCGGA	3 cut(s)	154, 404, 1577
Bsp143I	GATC	8 cut(s)	82, 102, 1364, 1574, 1743, 2050, 2158, 2290
BspANI	GGCC	6 cut(s)	386, 885, 1275, 1383, 1604, 1815
BspCNI	CTCAG	9 cut(s)	364, 712, 760, 796, 849, 1485, 1732, 2470, 2743
BspEI	TCCGGA	3 cut(s)	154, 404, 1577
BspHI	TCATGA	1 cut(s)	1075
BspMI	ACCTGC	2 cut(s)	985, 1109
BspPI	GGATC	4 cut(s)	1372, 1569, 1582, 2058
BspT104I	TTCGAA	3 cut(s)	440, 1190, 1472
BspT107I	GGYRCC	3 cut(s)	145, 2181, 2446
BsrBI	CCGCTC	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	1681
BsrFI	RCCGGY	3 cut(s)	172, 184, 730
BsrI	ACTGG	6 cut(s)	241, 1454, 1707, 2471, 2486, 2556
BssAI	RCCGGY	3 cut(s)	172, 184, 730
BssECI	CCNNGG	5 cut(s)	9, 123, 261, 630, 2046
BssMI	GATC	8 cut(s)	82, 102, 1364, 1574, 1743, 2050, 2158, 2290
BssNAI	GTATAC	1 cut(s)	1697
BssNI	GRCGYC	2 cut(s)	344, 831
BssT1I	CCWWGG	1 cut(s)	630
Bst1107I	GTATAC	1 cut(s)	1697
Bst2UI	CCWGG	2 cut(s)	1131, 1986
Bst4CI	ACNGT	6 cut(s)	250, 334, 842, 1311, 2124, 2625
Bst6I	CTCTTC	2 cut(s)	1719, 2703
BstACI	GRCGYC	2 cut(s)	344, 831
BstBI	TTCGAA	3 cut(s)	440, 1190, 1472
BstC8I	GCNNGC	2 cut(s)	2097, 2758
BstDSI	CCRYGG	1 cut(s)	123
BstEII	GGTNACC	1 cut(s)	1334
BstF5I	GGATG	7 cut(s)	963, 1308, 1366, 2311, 2371, 2482, 2710
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	8 cut(s)	85, 105, 1367, 1577, 1746, 2053, 2161, 2293
BstMAI	GTCTC	3 cut(s)	11, 258, 1813
BstMBI	GATC	8 cut(s)	82, 102, 1364, 1574, 1743, 2050, 2158, 2290
BstMWI	GCNNNNNNNGC	9 cut(s)	20, 190, 202, 518, 736, 967, 1946, 2520, 2724
BstNI	CCWGG	2 cut(s)	1131, 1986
BstPI	GGTNACC	1 cut(s)	1334
BstSCI	CCNGG	5 cut(s)	196, 386, 1129, 1275, 1984
BstSFI	CTRYAG	3 cut(s)	841, 2336, 2743
BstV1I	GCAGC	7 cut(s)	957, 1876, 2523, 2535, 2576, 2662, 2681
BstX2I	RGATCY	2 cut(s)	1574, 2050
BstXI	CCANNNNNNTGG	2 cut(s)	637, 1347
BstYI	RGATCY	2 cut(s)	1574, 2050
BstZ17I	GTATAC	1 cut(s)	1697
BsuI	GTATCC	2 cut(s)	1394, 2284
BsuRI	GGCC	6 cut(s)	386, 885, 1275, 1383, 1604, 1815
BtgI	CCRYGG	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	660
BtrI	CACGTC	1 cut(s)	1712
BtsCI	GGATG	7 cut(s)	963, 1308, 1366, 2311, 2371, 2482, 2710
BtsI	GCAGTG	2 cut(s)	642, 1448
BtsIMutI	CAGTG	9 cut(s)	642, 801, 1331, 1448, 1461, 2465, 2493, 2549, 2748
BveI	ACCTGC	2 cut(s)	985, 1109
Cac8I	GCNNGC	2 cut(s)	2097, 2758
CaiI	CAGNNNCTG	1 cut(s)	1822
CciI	TCATGA	1 cut(s)	1075
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	3 cut(s)	172, 184, 730
Cfr13I	GGNCC	8 cut(s)	65, 178, 384, 883, 1223, 1381, 2316, 2505
CseI	GACGC	1 cut(s)	839
CsiI	ACCWGGT	1 cut(s)	1984
Csp6I	GTAC	6 cut(s)	40, 838, 1587, 2182, 2447, 2626
CviAII	CATG	1 cut(s)	1076
CviQI	GTAC	6 cut(s)	40, 838, 1587, 2182, 2447, 2626
DpnI	GATC	8 cut(s)	84, 104, 1366, 1576, 1745, 2052, 2160, 2292
DpnII	GATC	8 cut(s)	82, 102, 1364, 1574, 1743, 2050, 2158, 2290
DraI	TTTAAA	1 cut(s)	2697
EaeI	YGGCCR	2 cut(s)	1273, 1813
Eam1104I	CTCTTC	2 cut(s)	1719, 2703
EarI	CTCTTC	2 cut(s)	1719, 2703
EciI	GGCGGA	2 cut(s)	29, 38
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	630
Eco24I	GRGCYC	2 cut(s)	231, 2046
Eco47I	GGWCC	5 cut(s)	65, 178, 1223, 2316, 2505
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	5 cut(s)	806, 1529, 2091, 2154, 2707
Eco88I	CYCGRG	2 cut(s)	8, 615
Eco91I	GGTNACC	1 cut(s)	1334
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	3 cut(s)	65, 1223, 2316
EcoO65I	GGTNACC	1 cut(s)	1334
EcoRII	CCWGG	2 cut(s)	1129, 1984
EcoT14I	CCWWGG	1 cut(s)	630
EcoT38I	GRGCYC	2 cut(s)	231, 2046
ErhI	CCWWGG	1 cut(s)	630
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	1 cut(s)	1079
FalI	AAGNNNNNCTT	2 cut(s)	1281, 1313
FaqI	GGGAC	6 cut(s)	692, 805, 1188, 1209, 1502, 1722
FatI	CATG	1 cut(s)	1075
FauI	CCCGC	3 cut(s)	419, 667, 732
FauNDI	CATATG	2 cut(s)	1406, 2388
FbaI	TGATCA	2 cut(s)	2158, 2290
FblI	GTMKAC	5 cut(s)	111, 245, 1696, 2034, 2106
FokI	GGATG	7 cut(s)	970, 1315, 1373, 2318, 2358, 2469, 2717
FriOI	GRGCYC	2 cut(s)	231, 2046
FspBI	CTAG	5 cut(s)	795, 954, 1242, 1764, 2561
GlaI	GCGC	1 cut(s)	36
GsaI	CCCAGC	2 cut(s)	496, 1889
GsuI	CTGGAG	1 cut(s)	1724
HaeIII	GGCC	6 cut(s)	386, 885, 1275, 1383, 1604, 1815
HgaI	GACGC	1 cut(s)	839
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	2 cut(s)	344, 831
Hin1II	CATG	1 cut(s)	1079
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	3 cut(s)	112, 246, 2020
HindII	GTYRAC	3 cut(s)	112, 246, 2020
HindIII	AAGCTT	1 cut(s)	1427
Hpy166II	GTNNAC	8 cut(s)	112, 246, 801, 1662, 1697, 2020, 2035, 2107
Hpy188III	TCNNGA	9 cut(s)	155, 405, 677, 1076, 1158, 1578, 1849, 2054, 2590
Hpy8I	GTNNAC	8 cut(s)	112, 246, 801, 1662, 1697, 2020, 2035, 2107
Hpy99I	CGWCG	8 cut(s)	113, 140, 250, 304, 334, 346, 349, 2128
HpyCH4III	ACNGT	6 cut(s)	250, 334, 842, 1311, 2124, 2625
HpyCH4IV	ACGT	6 cut(s)	108, 215, 344, 671, 1711, 2628
HpyCH4V	TGCA	7 cut(s)	819, 1907, 2204, 2226, 2579, 2650, 2669
HpyF10VI	GCNNNNNNNGC	9 cut(s)	20, 190, 202, 518, 736, 967, 1946, 2520, 2724
HpySE526I	ACGT	6 cut(s)	108, 215, 344, 671, 1711, 2628
Hsp92I	GRCGYC	2 cut(s)	344, 831
Hsp92II	CATG	1 cut(s)	1079
HspAI	GCGC	1 cut(s)	35
KflI	GGGWCCC	1 cut(s)	1223
Kpn2I	TCCGGA	3 cut(s)	154, 404, 1577
KpnI	GGTACC	2 cut(s)	2185, 2450
Ksp22I	TGATCA	2 cut(s)	2158, 2290
Kzo9I	GATC	8 cut(s)	82, 102, 1364, 1574, 1743, 2050, 2158, 2290
LmnI	GCTCC	6 cut(s)	425, 501, 509, 526, 742, 1081
Lsp1109I	GCAGC	7 cut(s)	957, 1876, 2523, 2535, 2576, 2662, 2681
LweI	GCATC	7 cut(s)	864, 948, 1765, 2138, 2322, 2370, 2656
MabI	ACCWGGT	1 cut(s)	1984
MaeI	CTAG	5 cut(s)	795, 954, 1242, 1764, 2561
MaeII	ACGT	6 cut(s)	108, 215, 344, 671, 1711, 2628
MalI	GATC	8 cut(s)	84, 104, 1366, 1576, 1745, 2052, 2160, 2292
MbiI	CCGCTC	1 cut(s)	504
MboI	GATC	8 cut(s)	82, 102, 1364, 1574, 1743, 2050, 2158, 2290
MflI	RGATCY	2 cut(s)	1574, 2050
MhlI	GDGCHC	3 cut(s)	231, 953, 2046
MlsI	TGGCCA	1 cut(s)	1815
MluCI	AATT	6 cut(s)	410, 451, 1042, 1281, 1551, 1970
MluNI	TGGCCA	1 cut(s)	1815
MlyI	GAGTC	3 cut(s)	593, 1521, 2162
MmeI	TCCRAC	9 cut(s)	118, 281, 291, 300, 411, 1543, 2214, 2233, 2399
Mox20I	TGGCCA	1 cut(s)	1815
MroI	TCCGGA	3 cut(s)	154, 404, 1577
MroXI	GAANNNNTTC	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	1815
MseI	TTAA	3 cut(s)	2027, 2676, 2696
MslI	CAYNNNNRTG	3 cut(s)	1052, 1212, 2154
Msp20I	TGGCCA	1 cut(s)	1815
MspA1I	CMGCKG	2 cut(s)	662, 1889
MspR9I	CCNGG	5 cut(s)	198, 388, 1131, 1277, 1986
MvaI	CCWGG	2 cut(s)	1131, 1986
MwoI	GCNNNNNNNGC	9 cut(s)	20, 190, 202, 518, 736, 967, 1946, 2520, 2724
NciI	CCSGG	3 cut(s)	198, 388, 1277
NdeI	CATATG	2 cut(s)	1406, 2388
NdeII	GATC	8 cut(s)	82, 102, 1364, 1574, 1743, 2050, 2158, 2290
NlaIII	CATG	1 cut(s)	1079
NmuCI	GTSAC	5 cut(s)	667, 827, 1446, 2282, 2462
NspV	TTCGAA	3 cut(s)	440, 1190, 1472
PagI	TCATGA	1 cut(s)	1075
PaqCI	CACCTGC	1 cut(s)	985
PcsI	WCGNNNNNNNCGW	3 cut(s)	254, 326, 338
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	8 cut(s)	117, 323, 553, 686, 1474, 1609, 1934, 2404
PflFI	GACNNNGTC	1 cut(s)	250
PflMI	CCANNNNNTGG	1 cut(s)	2488
PleI	GAGTC	3 cut(s)	592, 1520, 2162
PpsI	GAGTC	3 cut(s)	592, 1520, 2162
PpuMI	RGGWCCY	3 cut(s)	65, 1223, 2316
Psp124BI	GAGCTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	215
Psp5II	RGGWCCY	3 cut(s)	65, 1223, 2316
Psp6I	CCWGG	2 cut(s)	1129, 1984
PspEI	GGTNACC	1 cut(s)	1334
PspFI	CCCAGC	2 cut(s)	492, 1885
PspGI	CCWGG	2 cut(s)	1129, 1984
PspPI	GGNCC	8 cut(s)	65, 178, 384, 883, 1223, 1381, 2316, 2505
PspPPI	RGGWCCY	3 cut(s)	65, 1223, 2316
PstNI	CAGNNNCTG	1 cut(s)	1822
PsuI	RGATCY	2 cut(s)	1574, 2050
PsyI	GACNNNGTC	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	1889
RsaI	GTAC	6 cut(s)	41, 839, 1588, 2183, 2448, 2627
RsaNI	GTAC	6 cut(s)	40, 838, 1587, 2182, 2447, 2626
RseI	CAYNNNNRTG	3 cut(s)	1052, 1212, 2154
SacI	GAGCTC	1 cut(s)	231
SalI	GTCGAC	2 cut(s)	110, 244
SaqAI	TTAA	3 cut(s)	2027, 2676, 2696
Sau3AI	GATC	8 cut(s)	82, 102, 1364, 1574, 1743, 2050, 2158, 2290
Sau96I	GGNCC	8 cut(s)	65, 178, 384, 883, 1223, 1381, 2316, 2505
ScaI	AGTACT	3 cut(s)	41, 839, 1588
SchI	GAGTC	3 cut(s)	593, 1521, 2162
ScrFI	CCNGG	5 cut(s)	198, 388, 1131, 1277, 1986
SduI	GDGCHC	3 cut(s)	231, 953, 2046
SexAI	ACCWGGT	1 cut(s)	1984
SfaNI	GCATC	7 cut(s)	864, 948, 1765, 2138, 2322, 2370, 2656
SfcI	CTRYAG	3 cut(s)	841, 2336, 2743
SfuI	TTCGAA	3 cut(s)	440, 1190, 1472
SinI	GGWCC	5 cut(s)	65, 178, 1223, 2316, 2505
SmiMI	CAYNNNNRTG	3 cut(s)	1052, 1212, 2154
SmlI	CTYRAG	5 cut(s)	230, 962, 1847, 2278, 2426
SmoI	CTYRAG	5 cut(s)	230, 962, 1847, 2278, 2426
Sse9I	AATT	6 cut(s)	410, 451, 1042, 1281, 1551, 1970
SspI	AATATT	1 cut(s)	2681
SspMI	CTAG	5 cut(s)	795, 954, 1242, 1764, 2561
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	5 cut(s)	196, 386, 1129, 1275, 1984
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	6 cut(s)	250, 334, 842, 1311, 2124, 2625
TaiI	ACGT	6 cut(s)	111, 218, 347, 674, 1714, 2631
TaqI	TCGA	7 cut(s)	111, 245, 360, 440, 872, 1190, 1472
TaqII	GACCGA	1 cut(s)	2493
TasI	AATT	6 cut(s)	410, 451, 1042, 1281, 1551, 1970
TatI	WGTACW	3 cut(s)	39, 837, 1586
TauI	GCSGC	4 cut(s)	7, 131, 196, 970
TfiI	GAWTC	8 cut(s)	117, 323, 553, 686, 1474, 1609, 1934, 2404
Tru1I	TTAA	3 cut(s)	2027, 2676, 2696
Tru9I	TTAA	3 cut(s)	2027, 2676, 2696
TscAI	CASTG	9 cut(s)	642, 808, 1331, 1455, 1461, 2465, 2493, 2556, 2755
TseFI	GTSAC	5 cut(s)	667, 827, 1446, 2282, 2462
TseI	GCWGC	7 cut(s)	970, 1889, 2511, 2523, 2564, 2650, 2669
Tsp45I	GTSAC	5 cut(s)	667, 827, 1446, 2282, 2462
TspDTI	ATGAA	5 cut(s)	224, 1016, 1993, 2073, 2721
TspGWI	ACGGA	1 cut(s)	577
TspRI	CASTG	9 cut(s)	642, 808, 1331, 1455, 1461, 2465, 2493, 2556, 2755
Tth111I	GACNNNGTC	1 cut(s)	250
Van91I	CCANNNNNTGG	1 cut(s)	2488
VpaK11BI	GGWCC	5 cut(s)	65, 178, 1223, 2316, 2505
XapI	RAATTY	1 cut(s)	1551
XcmI	CCANNNNNNNNNTGG	3 cut(s)	634, 1137, 1214
XmiI	GTMKAC	5 cut(s)	111, 245, 1696, 2034, 2106
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	5 cut(s)	795, 954, 1242, 1764, 2561
ZraI	GACGTC	1 cut(s)	345
ZrmI	AGTACT	3 cut(s)	41, 839, 1588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.