Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002708

Physical Location & Seq

Genomic Coordinates Forward (+)

57822219 .. 57906417

Gene Structure 84199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG342600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3144 bp

ATGGGTGGAGGAATTCGCACAAGCGTGAAGGGGTACCTCCTTTCGCAGCGGATCACTACGGCTTCAGACACAGTGCATGCAAACGAGAGCACCAATAGAAATTTCACTGCACCCCAAGCTGCTGATTCAGAACAAGAGACGAGCACGGACTTGGATTCATCTAACTCATATTGGCTCAGTAGGTTTAGTGGTAGCATTCCTTGCTTGCCGATATTGGGCTCTGCTTCAAAGAGCAGGGTTTCAAATAGAACTAGAATCAGAGCTGAGAGTCTGCCTCACATAGTGCCTTCAACTCCTAGGACAGAGGTTGAGATCTTGCTAAAGAGCTTCTTTTTTAATGAACTGAAAACCGCCACCAGCAACTTTCGGCCTGATAATGTGGTGGGTGAGGGTGGTTTTGGTACCGTCTTTAAGGGGTGGCTTGATCAGAATTCATTAGCAGCTGCCAAGCCTGGTACAGGAATTGCTGTTGCTGTAAAGAGGCTTAACCAAGAACGTCATCAGGGTCGGGAGGAATGGTTTATTGCTCTTGGTGCTGCAAAGGCTCTAGCATTTCTTCACAATGAAGCAAAAGTTATACATCGTGACTTTAAAACATCTAATATCCTGTTGGATTCAACCTACAATGTTAAAATCTCTGATTTTGGTTTGGCTGTGGATGCACGAGCATTTGACAGACACCGAGGTGCTAAAACAAGGGTCAAGGGCACATATGGATATGCAGCTCCTGAGTATATAGAAACAAGGGTCATGGGCACATATGGATATGCAGCTCCTGAGTATGTAGCTACAGGTCGTTTGACCACCAAATGTGATGTGTATGGTTTTGGAGCTGTTATGCTCGAAATGATTTCCGGAAAACGAGTTTTTGACCAGAACCGGCCACCCGGGGAACAGAACTTAGTTGAATGGGCCAAACCTTACCTTTTCAGCAAACACAGAGTCCTCCAAATTTTTGATCATCATATCAAAGGCCAGTTTTCTGTGGCCAGAGCTCTTAAAGCAGTTGACCTTGCATTTCTTTGCCTATCAAGAGATCCCAAGCTTAGGCCAAACATGAATAATGTAGTAAAAATATTGGAGAAGCTTCAGGAATACAGTGATATGGATGGCTTGGGGATCTCTCAAAATAAACGACGCCAAATCCGCATAACTGATCAATCAGCTAGTGACCTAGTGGCTATTGATCAGAATCAGCAATTGGATATAATTTGTTTCATAGCTACTGAGACGACTATGACTAGTGGTGGGATTCGAACAAGCGTGAAGGCCTATATTAATGTGCAGCGACTCGCTTCTTTGGCTGTGAATCATGAGAACAATGAGAGCATCAATACCCATTTGGCTCCACGTGCAGAGGCTTCCATGGCAGCAGCAGATTCAAATAGATCATATGGGCTCTGTGATGGTAACATGCCTTGCTTGCCAATCTTGAGCTCTGCTACAAAGTCTTGTGAAGCAAATCAGCTGCCCCCGGCAGCGGATACTATTAGTGTGAATGGACAACCTCTAACTCCTGAAGAGCTTCTCACGTTACAAAGCTGCCCAAACCCTCCAAAGAAGCTAAAACCAGGAAACTATTGGTATGACAAGATTTGTGGACTTTGGGGGAAGGAAGGACAGAAGCCTTCAGAGGTAATCTCTCCCCACCTTTGTGTTGGGGGTCGCATGAAGGAAAATGCTAGCAACGGAAGCACACGGGTTTTCATTAATGGTCGGGAAATCACCAAAGTAGAGCTCCGGATGTTGCAGCTGGTAGGAGTTGAATGTGCTGGTTACCCACACTTTTGGGTGACTGAAGATGGGTCATACCAAGAGGAGGGCATGAACAATGTTAAAGGATCCATATGGCGCATGGCTGGATCAAAGCTTGTCTGTGCTGTCTTGTCACTGCCAGTCCCTTCTAGATCTTCAAATCCTATCATTCCCAAAATCATTGAGCAGAGAACACTTCAGAAGATACTTTTAGTTGGATGTAACGGATCTGGAGCAAGTTCTATATTTAAACAGGCCAAGATTCTATATGAAGCTATCCCTTTTTCGGTGGATGAACGCATAAGTATTAAGTCTACAATACAAACAAACGTGTATAAGTATGTTGGTATACTTCTTGAGGTTCGGGAACGTTTTGAAGAGGAATGTTTGGCTGAGATAAGGAGGCAATGCTCTAGTCAACCAGTTGCCAGTGGAGACAGCAACAAAACGCCCTACTCCATTGGCCCGAAGCTGAAAGCATTCTCTGATTGGCTTCTTAAGACTGTGGTGTCAGGCTATGTAGAGGCCATCTTCCCAGCTGCTACGCGTGAATTTGCACCATTTGTGGAGGAATTGTGGAATGATTCAGCCATTCAGGCCACATACAAGCGGTCAACTGAACTGGGAATGCTACCTAGTGTTGCTACTTATTTCATAAAGAGGGCTGTTCACATATTAAGAGTAAACTATGAGCCCACAGATGGAGACATCCTATATGCCGAAGTTGATACTTCATCTACTGGGTTGGCTTGTGTGGACTTCTCATTGCCCCAGTCAGTAATGAGAGATGACTTTTATGGTCGTGATACTACTGATCAGCATGACTCTTTGCTTAGGTACCAACTTGTTAGAGTAAATGCAGGACTTGGAGAAAGCTGTGAACAGTTGGACATGTTTGGAGATGTTGGAATAGTCATCTTCTGTGTGTCCTTGAGTGACTATGATCAATTTTCTGCTGACAGTAATGGGACTTTCACAAACAAGATGCTGCAGAGCAGATCTGTTTTTGAGAGAATCGTTACTCATCCCACCTTTGAGCAGATGAACTGCCTTTTGCTTCTCAACGAGTTTGATTTGTTTGTGAAAAAGATGGCACGGGTCCCTTTAACTCGATGTGAATGGTTTGATGATTTTAATCCAGTGATTAACAATGACCTGGGTCATCGAGCATATGAGTATATAGCAGTGAAGTTCAAGAGGCTCTATTCTTCTCTAACTGACAAGAGATTGTATGTTTCGCTGGTGGAGGACTTTGAACCTGGTAATGTACGTGAAGCTTTAAAGTATTCAACGGAGATTTTAAATTGGGATGAAGTGAGAGACGAATATTGGTGTTATTCAGATTCAGATTACTACTCTATTTCAGCTTCAGATACAGATTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0004857 GO:0005095 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009898 GO:0009987 GO:0016020 GO:0016247 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0030234 GO:0030695 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034260 GO:0035639 GO:0036094 GO:0043086 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0048519 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051346 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098772 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

1047

Amino Acids

116.84

Weight (kDa)

6.26

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	174 - 358	1.8e-25	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	176 - 358	1.8e-16	Protein tyrosine and serine/threonine kinase
G-alpha	PF00503	651 - 1017	2e-58	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23460
fragaria_vesca	FvH4_1g14590 FvH4_1g14590
malus_domestica	MD00G1067300.v1.1 MD02G1159500.v1.1
prunus_persica	Prupe.7G144400_v2.0.a1
pyrus_communis	pycom02g12580 pycom15g23720
rosa_chinensis	RchiOBHm_Chr1g0367271 RchiOBHm_Chr1g0367281 RchiOBHm_Chr1g0367331 RchiOBHm_Chr2g0103371
rosa_laevigata	RLG00000017231 RLG00000027279 RLG00000027284
rosa_multiflora	Rmu_sc0001555.1_g000003 Rmu_sc0002434.1_g000010 Rmu_sc0011000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00139680 Rroxscaffold_4G00289390 Rroxscaffold_4G00289470 Rroxscaffold_4G00289480
rosa_rugosa	Rorug02G0114700 Rorug06G0002300
rosa_samantha	Rh1AG342600 Rh1BG303200 Rh1BG303600 Rh1BG303700 Rh1CG319500 Rh1CG319700 Rh1DG335600 Rh1DG336000 Rh1DG336100 Rh2AG162700 Rh2BG169800 Rh2CG169900 Rh2DG168800
rosa_wichuraiana	Rw1G030440 Rw2G012780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2263
Acc65I	GGTACC	3 cut(s)	33, 401, 2592
AccB1I	GGYRCC	3 cut(s)	33, 401, 2592
AccI	GTMKAC	2 cut(s)	2069, 2104
AccII	CGCG	1 cut(s)	2302
AccIII	TCCGGA	2 cut(s)	854, 1740
AciI	CCGC	5 cut(s)	49, 351, 1147, 1481, 2365
AclI	AACGTT	1 cut(s)	2125
AclWI	GGATC	7 cut(s)	59, 1031, 1127, 1836, 1849, 1870, 1990
AcoI	YGGCCR	2 cut(s)	881, 987
AcsI	RAATTY	5 cut(s)	12, 100, 430, 951, 2306
AcuI	CTGAAG	7 cut(s)	48, 1073, 1539, 1614, 1818, 1937, 3108
AcvI	CACGTG	1 cut(s)	1352
AcyI	GRCGYC	1 cut(s)	1138
AdeI	CACNNNGTG	1 cut(s)	283
AfaI	GTAC	5 cut(s)	35, 403, 457, 2594, 3024
AfiI	CCNNNNNNNGG	7 cut(s)	215, 458, 1047, 1480, 1819, 2041, 2456
AflII	CTTAAG	1 cut(s)	2252
AflIII	ACRYGT	3 cut(s)	2085, 2300, 2646
AhlI	ACTAGT	1 cut(s)	1241
AjnI	CCWGG	4 cut(s)	451, 1570, 2910, 3013
AjuI	GAANNNNNNNTTGG	4 cut(s)	86, 118, 1184, 1216
AleI	CACNNNNGTG	3 cut(s)	23, 684, 1653
Alw21I	GWGCWC	5 cut(s)	92, 146, 997, 1439, 1740
Alw26I	GTCTC	5 cut(s)	131, 1223, 2184, 2454, 3069
AlwI	GGATC	7 cut(s)	59, 1031, 1127, 1836, 1849, 1870, 1990
AlwNI	CAGNNNCTG	2 cut(s)	728, 776
Ama87I	CYCGRG	1 cut(s)	887
Aor13HI	TCCGGA	2 cut(s)	854, 1740
ApoI	RAATTY	5 cut(s)	12, 100, 430, 951, 2306
ArsI	GACNNNNNNTTYG	2 cut(s)	927, 959
AseI	ATTAAT	2 cut(s)	1278, 1710
Asp700I	GAANNNNTTC	2 cut(s)	1524, 2234
Asp718I	GGTACC	3 cut(s)	33, 401, 2592
AspA2I	CCTAGG	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	1854
AspS9I	GGNCC	3 cut(s)	912, 2219, 2854
AsuC2I	CCSGG	3 cut(s)	888, 889, 1475
AsuHPI	GGTGA	3 cut(s)	398, 1717, 1804
AsuII	TTCGAA	1 cut(s)	1255
AsuNHI	GCTAGC	1 cut(s)	1682
AvaI	CYCGRG	1 cut(s)	887
AvaII	GGWCC	1 cut(s)	2854
AvrII	CCTAGG	1 cut(s)	296
BaeGI	GKGCMC	2 cut(s)	710, 758
BalI	TGGCCA	1 cut(s)	989
BamHI	GGATCC	1 cut(s)	1841
BanI	GGYRCC	3 cut(s)	33, 401, 2592
BanII	GRGCYC	6 cut(s)	221, 997, 1401, 1439, 1740, 2451
BauI	CACGAG	1 cut(s)	663
BbrPI	CACGTG	1 cut(s)	1352
Bbv12I	GWGCWC	5 cut(s)	92, 146, 997, 1439, 1740
BccI	CCATC	6 cut(s)	1103, 1400, 1796, 2291, 2450, 2839
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	4 cut(s)	453, 1572, 2912, 3015
BciVI	GTATCC	1 cut(s)	1477
BclI	TGATCA	6 cut(s)	424, 958, 1156, 1186, 2569, 2698
BcnI	CCSGG	3 cut(s)	888, 889, 1475
BcoDI	GTCTC	5 cut(s)	131, 1223, 2184, 2454, 3069
BcuI	ACTAGT	1 cut(s)	1241
BfmI	CTRYAG	2 cut(s)	789, 2744
BfrI	CTTAAG	1 cut(s)	2252
BfuI	GTATCC	1 cut(s)	1477
BglI	GCCNNNNNGGC	1 cut(s)	2351
BglII	AGATCT	3 cut(s)	312, 1907, 2753
BlnI	CCTAGG	1 cut(s)	296
Bme1390I	CCNGG	7 cut(s)	453, 888, 889, 1475, 1572, 2912, 3015
Bme18I	GGWCC	1 cut(s)	2854
BmeT110I	CYCGRG	1 cut(s)	887
BmgT120I	GGNCC	3 cut(s)	912, 2219, 2854
BmiI	GGNNCC	7 cut(s)	35, 403, 1347, 1843, 2594, 2855, 2856
BmrFI	CCNGG	7 cut(s)	453, 888, 889, 1475, 1572, 2912, 3015
BmrI	ACTGGG	3 cut(s)	2387, 2505, 2521
BmsI	GCATC	3 cut(s)	649, 1338, 2730
BmtI	GCTAGC	1 cut(s)	1686
BmuI	ACTGGG	3 cut(s)	2387, 2505, 2521
BoxI	GACNNNNGTC	1 cut(s)	2913
BplI	GAGNNNNNCTC	4 cut(s)	259, 291, 1625, 1657
BpmI	CTGGAG	1 cut(s)	2007
Bpu10I	CCTNAGC	2 cut(s)	1046, 2588
Bpu14I	TTCGAA	1 cut(s)	1255
BpuEI	CTTGAG	3 cut(s)	1453, 2132, 2707
BpuMI	CCSGG	3 cut(s)	888, 889, 1475
BsaAI	YACGTR	2 cut(s)	1352, 3026
BsaBI	GATNNNNATC	2 cut(s)	1191, 2889
BsaHI	GRCGYC	1 cut(s)	1138
BsaJI	CCNNGG	7 cut(s)	296, 682, 887, 888, 1365, 1473, 2911
BsaWI	WCCGGW	2 cut(s)	854, 1740
BsaXI	ACNNNNNCTCC	4 cut(s)	503, 533, 2315, 2345
Bsc4I	CCNNNNNNNGG	7 cut(s)	215, 458, 1047, 1480, 1819, 2041, 2456
Bse118I	RCCGGY	1 cut(s)	879
Bse1I	ACTGG	8 cut(s)	976, 1895, 2177, 2184, 2382, 2500, 2527, 2894
Bse3DI	GCAATG	2 cut(s)	2168, 2519
Bse8I	GATNNNNATC	2 cut(s)	1191, 2889
BseAI	TCCGGA	2 cut(s)	854, 1740
BseBI	CCWGG	4 cut(s)	453, 1572, 2912, 3015
BseDI	CCNNGG	7 cut(s)	296, 682, 887, 888, 1365, 1473, 2911
BseGI	GGATG	8 cut(s)	664, 1114, 1749, 1979, 2053, 2463, 2779, 3070
BseJI	GATNNNNATC	2 cut(s)	1191, 2889
BseLI	CCNNNNNNNGG	7 cut(s)	215, 458, 1047, 1480, 1819, 2041, 2456
BseMI	GCAATG	2 cut(s)	2168, 2519
BseMII	CTCAG	6 cut(s)	190, 255, 720, 768, 1218, 2139
BseNI	ACTGG	8 cut(s)	976, 1895, 2177, 2184, 2382, 2500, 2527, 2894
BseRI	GAGGAG	1 cut(s)	1832
BseSI	GKGCMC	2 cut(s)	710, 758
BseYI	CCCAGC	1 cut(s)	2290
BsgI	GTGCAG	3 cut(s)	93, 1304, 1374
Bsh1236I	CGCG	1 cut(s)	2302
BshNI	GGYRCC	3 cut(s)	33, 401, 2592
BsiHKAI	GWGCWC	5 cut(s)	92, 146, 997, 1439, 1740
BsiHKCI	CYCGRG	1 cut(s)	887
BsiSI	CCGG	5 cut(s)	855, 880, 888, 1475, 1741
BslFI	GGGAC	3 cut(s)	1883, 2737, 2840
BslI	CCNNNNNNNGG	7 cut(s)	215, 458, 1047, 1480, 1819, 2041, 2456
BsmAI	GTCTC	5 cut(s)	131, 1223, 2184, 2454, 3069
BsmBI	CGTCTC	3 cut(s)	131, 1223, 3069
BsmFI	GGGAC	3 cut(s)	1883, 2737, 2840
BsmI	GAATGC	3 cut(s)	195, 2234, 2388
BsoBI	CYCGRG	1 cut(s)	887
Bsp119I	TTCGAA	1 cut(s)	1255
Bsp13I	TCCGGA	2 cut(s)	854, 1740
Bsp19I	CCATGG	1 cut(s)	1365
BspACI	CCGC	5 cut(s)	49, 351, 1147, 1481, 2365
BspCNI	CTCAG	6 cut(s)	189, 256, 721, 769, 1219, 2140
BspEI	TCCGGA	2 cut(s)	854, 1740
BspFNI	CGCG	1 cut(s)	2302
BspHI	TCATGA	1 cut(s)	1312
BspLI	GGNNCC	7 cut(s)	35, 403, 1347, 1843, 2594, 2855, 2856
BspMAI	CTGCAG	1 cut(s)	2748
BspOI	GCTAGC	1 cut(s)	1686
BspPI	GGATC	7 cut(s)	59, 1031, 1127, 1836, 1849, 1870, 1990
BspQI	GCTCTTC	1 cut(s)	1515
BspT104I	TTCGAA	1 cut(s)	1255
BspT107I	GGYRCC	3 cut(s)	33, 401, 2592
BspTI	CTTAAG	1 cut(s)	2252
BsrDI	GCAATG	2 cut(s)	2168, 2519
BsrFI	RCCGGY	1 cut(s)	879
BsrI	ACTGG	8 cut(s)	976, 1895, 2177, 2184, 2382, 2500, 2527, 2894
BssAI	RCCGGY	1 cut(s)	879
BssECI	CCNNGG	7 cut(s)	296, 682, 887, 888, 1365, 1473, 2911
BssNAI	GTATAC	1 cut(s)	2105
BssNI	GRCGYC	1 cut(s)	1138
BssSI	CACGAG	1 cut(s)	663
BssT1I	CCWWGG	2 cut(s)	296, 1365
Bst1107I	GTATAC	1 cut(s)	2105
Bst2BI	CACGAG	1 cut(s)	663
Bst2UI	CCWGG	4 cut(s)	453, 1572, 2912, 3015
Bst4CI	ACNGT	6 cut(s)	73, 406, 1100, 2260, 2640, 2717
Bst6I	CTCTTC	2 cut(s)	1515, 2127
BstACI	GRCGYC	1 cut(s)	1138
BstAFI	CTTAAG	1 cut(s)	2252
BstAPI	GCANNNNNTGC	1 cut(s)	201
BstBAI	YACGTR	2 cut(s)	1352, 3026
BstBI	TTCGAA	1 cut(s)	1255
BstC8I	GCNNGC	4 cut(s)	78, 206, 1424, 1684
BstDEI	CTNAG	9 cut(s)	176, 264, 729, 777, 901, 1046, 1227, 2148, 2588
BstDSI	CCRYGG	1 cut(s)	1365
BstEII	GGTNACC	1 cut(s)	1775
BstENI	CCTNNNNNAGG	1 cut(s)	456
BstF5I	GGATG	8 cut(s)	664, 1114, 1749, 1979, 2053, 2463, 2779, 3070
BstFNI	CGCG	1 cut(s)	2302
BstHHI	GCGC	1 cut(s)	1854
BstMAI	GTCTC	5 cut(s)	131, 1223, 2184, 2454, 3069
BstNI	CCWGG	4 cut(s)	453, 1572, 2912, 3015
BstNSI	RCATGY	3 cut(s)	80, 1417, 2650
BstPAI	GACNNNNGTC	1 cut(s)	2913
BstPI	GGTNACC	1 cut(s)	1775
BstSCI	CCNGG	7 cut(s)	451, 886, 887, 1473, 1570, 2910, 3013
BstSFI	CTRYAG	2 cut(s)	789, 2744
BstSLI	GKGCMC	2 cut(s)	710, 758
BstUI	CGCG	1 cut(s)	2302
BstX2I	RGATCY	7 cut(s)	312, 1036, 1119, 1841, 1907, 1982, 2753
BstXI	CCANNNNNNTGG	1 cut(s)	1788
BstYI	RGATCY	7 cut(s)	312, 1036, 1119, 1841, 1907, 1982, 2753
BstZ17I	GTATAC	1 cut(s)	2105
BsuI	GTATCC	1 cut(s)	1477
BtgI	CCRYGG	1 cut(s)	1365
BtsCI	GGATG	8 cut(s)	664, 1114, 1749, 1979, 2053, 2463, 2779, 3070
BtsI	GCAGTG	3 cut(s)	105, 1889, 2946
BtsIMutI	CAGTG	7 cut(s)	78, 105, 1105, 1889, 2191, 2901, 2946
Cac8I	GCNNGC	4 cut(s)	78, 206, 1424, 1684
CaiI	CAGNNNCTG	2 cut(s)	728, 776
CciI	TCATGA	1 cut(s)	1312
CfoI	GCGC	1 cut(s)	1854
Cfr10I	RCCGGY	1 cut(s)	879
Cfr13I	GGNCC	3 cut(s)	912, 2219, 2854
Cfr9I	CCCGGG	1 cut(s)	887
CseI	GACGC	1 cut(s)	1146
CsiI	ACCWGGT	1 cut(s)	3013
Csp6I	GTAC	5 cut(s)	34, 402, 456, 2593, 3023
CspCI	CAANNNNNGTGG	2 cut(s)	1579, 1614
CviQI	GTAC	5 cut(s)	34, 402, 456, 2593, 3023
DdeI	CTNAG	9 cut(s)	176, 264, 729, 777, 901, 1046, 1227, 2148, 2588
DraI	TTTAAA	4 cut(s)	592, 2005, 3036, 3057
DraIII	CACNNNGTG	1 cut(s)	283
DrdI	GACNNNNNNGTC	1 cut(s)	2263
DseDI	GACNNNNNNGTC	1 cut(s)	2263
EaeI	YGGCCR	2 cut(s)	881, 987
Eam1104I	CTCTTC	2 cut(s)	1515, 2127
EarI	CTCTTC	2 cut(s)	1515, 2127
Ecl136II	GAGCTC	3 cut(s)	995, 1437, 1738
Eco130I	CCWWGG	2 cut(s)	296, 1365
Eco147I	AGGCCT	1 cut(s)	1271
Eco24I	GRGCYC	6 cut(s)	221, 997, 1401, 1439, 1740, 2451
Eco47I	GGWCC	1 cut(s)	2854
Eco53kI	GAGCTC	3 cut(s)	995, 1437, 1738
Eco57I	CTGAAG	7 cut(s)	48, 1073, 1539, 1614, 1818, 1937, 3108
Eco72I	CACGTG	1 cut(s)	1352
Eco88I	CYCGRG	1 cut(s)	887
Eco91I	GGTNACC	1 cut(s)	1775
EcoICRI	GAGCTC	3 cut(s)	995, 1437, 1738
EcoNI	CCTNNNNNAGG	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	2854
EcoO65I	GGTNACC	1 cut(s)	1775
EcoRI	GAATTC	2 cut(s)	12, 430
EcoRII	CCWGG	4 cut(s)	451, 1570, 2910, 3013
EcoT14I	CCWWGG	2 cut(s)	296, 1365
EcoT38I	GRGCYC	6 cut(s)	221, 997, 1401, 1439, 1740, 2451
ErhI	CCWWGG	2 cut(s)	296, 1365
Esp3I	CGTCTC	3 cut(s)	131, 1223, 3069
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	3 cut(s)	1883, 2737, 2840
FauNDI	CATATG	5 cut(s)	712, 760, 1393, 1847, 2926
FbaI	TGATCA	6 cut(s)	424, 958, 1156, 1186, 2569, 2698
FblI	GTMKAC	2 cut(s)	2069, 2104
FokI	GGATG	8 cut(s)	671, 1121, 1756, 1986, 2060, 2450, 2766, 3077
FriOI	GRGCYC	6 cut(s)	221, 997, 1401, 1439, 1740, 2451
GlaI	GCGC	1 cut(s)	1853
GsaI	CCCAGC	1 cut(s)	2294
GsuI	CTGGAG	1 cut(s)	2007
HapII	CCGG	5 cut(s)	855, 880, 888, 1475, 1741
HgaI	GACGC	1 cut(s)	1146
HhaI	GCGC	1 cut(s)	1854
Hin1I	GRCGYC	1 cut(s)	1138
Hin6I	GCGC	1 cut(s)	1852
HinP1I	GCGC	1 cut(s)	1852
HincII	GTYRAC	3 cut(s)	1009, 2174, 2370
HindII	GTYRAC	3 cut(s)	1009, 2174, 2370
HindIII	AAGCTT	4 cut(s)	1043, 1085, 1868, 3030
HpaII	CCGG	5 cut(s)	855, 880, 888, 1475, 1741
HphI	GGTGA	3 cut(s)	398, 1717, 1804
Hpy99I	CGWCG	1 cut(s)	1140
HpyAV	CCTTC	8 cut(s)	22, 297, 1261, 1606, 1610, 1638, 1666, 1911
HpyCH4III	ACNGT	6 cut(s)	73, 406, 1100, 2260, 2640, 2717
HpyCH4IV	ACGT	6 cut(s)	496, 1351, 1532, 2085, 2125, 3025
HpyF3I	CTNAG	9 cut(s)	176, 264, 729, 777, 901, 1046, 1227, 2148, 2588
HpySE526I	ACGT	6 cut(s)	496, 1351, 1532, 2085, 2125, 3025
Hsp92I	GRCGYC	1 cut(s)	1138
HspAI	GCGC	1 cut(s)	1852
KflI	GGGWCCC	1 cut(s)	2854
Kpn2I	TCCGGA	2 cut(s)	854, 1740
KpnI	GGTACC	3 cut(s)	37, 405, 2596
Ksp22I	TGATCA	6 cut(s)	424, 958, 1156, 1186, 2569, 2698
LguI	GCTCTTC	1 cut(s)	1515
LmnI	GCTCC	6 cut(s)	730, 778, 830, 1351, 1743, 1988
LweI	GCATC	3 cut(s)	649, 1338, 2730
MabI	ACCWGGT	1 cut(s)	3013
MaeII	ACGT	6 cut(s)	496, 1351, 1532, 2085, 2125, 3025
MboII	GAAGA	9 cut(s)	548, 1532, 1811, 1902, 1969, 2144, 2278, 2665, 2955
MfeI	CAATTG	1 cut(s)	1199
MflI	RGATCY	7 cut(s)	312, 1036, 1119, 1841, 1907, 1982, 2753
MlsI	TGGCCA	1 cut(s)	989
MluI	ACGCGT	1 cut(s)	2300
MluNI	TGGCCA	1 cut(s)	989
MlyI	GAGTC	4 cut(s)	277, 951, 1284, 2573
MmeI	TCCRAC	4 cut(s)	591, 1951, 2622, 2641
Mox20I	TGGCCA	1 cut(s)	989
MroI	TCCGGA	2 cut(s)	854, 1740
MroXI	GAANNNNTTC	2 cut(s)	1524, 2234
MscI	TGGCCA	1 cut(s)	989
MslI	CAYNNNNRTG	3 cut(s)	23, 684, 1653
Msp20I	TGGCCA	1 cut(s)	989
MspA1I	CMGCKG	6 cut(s)	49, 443, 1468, 1481, 1753, 2294
MspCI	CTTAAG	1 cut(s)	2252
MspI	CCGG	5 cut(s)	855, 880, 888, 1475, 1741
MspR9I	CCNGG	7 cut(s)	453, 888, 889, 1475, 1572, 2912, 3015
MunI	CAATTG	1 cut(s)	1199
Mva1269I	GAATGC	3 cut(s)	195, 2234, 2388
MvaI	CCWGG	4 cut(s)	453, 1572, 2912, 3015
MvnI	CGCG	1 cut(s)	2302
NciI	CCSGG	3 cut(s)	888, 889, 1475
NcoI	CCATGG	1 cut(s)	1365
NdeI	CATATG	5 cut(s)	712, 760, 1393, 1847, 2926
NheI	GCTAGC	1 cut(s)	1682
NlaIV	GGNNCC	7 cut(s)	35, 403, 1347, 1843, 2594, 2855, 2856
NmuCI	GTSAC	5 cut(s)	584, 1169, 1792, 1887, 2690
NspI	RCATGY	3 cut(s)	80, 1417, 2650
NspV	TTCGAA	1 cut(s)	1255
OliI	CACNNNNGTG	3 cut(s)	23, 684, 1653
PaeI	GCATGC	1 cut(s)	80
PagI	TCATGA	1 cut(s)	1312
PceI	AGGCCT	1 cut(s)	1271
PciI	ACATGT	1 cut(s)	2646
PciSI	GCTCTTC	1 cut(s)	1515
PctI	GAATGC	3 cut(s)	195, 2234, 2388
PdmI	GAANNNNTTC	2 cut(s)	1524, 2234
PleI	GAGTC	4 cut(s)	276, 950, 1284, 2573
PmaCI	CACGTG	1 cut(s)	1352
PmlI	CACGTG	1 cut(s)	1352
PpsI	GAGTC	4 cut(s)	276, 950, 1284, 2573
Ppu21I	YACGTR	2 cut(s)	1352, 3026
PpuMI	RGGWCCY	1 cut(s)	2854
PscI	ACATGT	1 cut(s)	2646
PshAI	GACNNNNGTC	1 cut(s)	2913
PshBI	ATTAAT	2 cut(s)	1278, 1710
Psp124BI	GAGCTC	3 cut(s)	997, 1439, 1740
Psp1406I	AACGTT	1 cut(s)	2125
Psp5II	RGGWCCY	1 cut(s)	2854
Psp6I	CCWGG	4 cut(s)	451, 1570, 2910, 3013
PspCI	CACGTG	1 cut(s)	1352
PspEI	GGTNACC	1 cut(s)	1775
PspFI	CCCAGC	1 cut(s)	2290
PspGI	CCWGG	4 cut(s)	451, 1570, 2910, 3013
PspN4I	GGNNCC	7 cut(s)	35, 403, 1347, 1843, 2594, 2855, 2856
PspPI	GGNCC	3 cut(s)	912, 2219, 2854
PspPPI	RGGWCCY	1 cut(s)	2854
PstI	CTGCAG	1 cut(s)	2748
PstNI	CAGNNNCTG	2 cut(s)	728, 776
PsuI	RGATCY	7 cut(s)	312, 1036, 1119, 1841, 1907, 1982, 2753
PvuII	CAGCTG	4 cut(s)	443, 1468, 1753, 2294
RsaI	GTAC	5 cut(s)	35, 403, 457, 2594, 3024
RsaNI	GTAC	5 cut(s)	34, 402, 456, 2593, 3023
RseI	CAYNNNNRTG	3 cut(s)	23, 684, 1653
SacI	GAGCTC	3 cut(s)	997, 1439, 1740
SapI	GCTCTTC	1 cut(s)	1515
Sau96I	GGNCC	3 cut(s)	912, 2219, 2854
SchI	GAGTC	4 cut(s)	277, 951, 1284, 2573
ScrFI	CCNGG	7 cut(s)	453, 888, 889, 1475, 1572, 2912, 3015
SexAI	ACCWGGT	1 cut(s)	3013
SfaNI	GCATC	3 cut(s)	649, 1338, 2730
SfcI	CTRYAG	2 cut(s)	789, 2744
SfuI	TTCGAA	1 cut(s)	1255
SinI	GGWCC	1 cut(s)	2854
SmaI	CCCGGG	1 cut(s)	889
SmiMI	CAYNNNNRTG	3 cut(s)	23, 684, 1653
SmlI	CTYRAG	4 cut(s)	1432, 2111, 2252, 2686
SmoI	CTYRAG	4 cut(s)	1432, 2111, 2252, 2686
SpeI	ACTAGT	1 cut(s)	1241
SphI	GCATGC	1 cut(s)	80
SseBI	AGGCCT	1 cut(s)	1271
SsiI	CCGC	5 cut(s)	49, 351, 1147, 1481, 2365
SspI	AATATT	2 cut(s)	1077, 3083
SstI	GAGCTC	3 cut(s)	997, 1439, 1740
StuI	AGGCCT	1 cut(s)	1271
StyD4I	CCNGG	7 cut(s)	451, 886, 887, 1473, 1570, 2910, 3013
StyI	CCWWGG	2 cut(s)	296, 1365
TaaI	ACNGT	6 cut(s)	73, 406, 1100, 2260, 2640, 2717
TaiI	ACGT	6 cut(s)	499, 1354, 1535, 2088, 2128, 3028
TaqI	TCGA	4 cut(s)	843, 1255, 2866, 2920
TscAI	CASTG	7 cut(s)	78, 112, 1105, 1896, 2191, 2901, 2946
TseFI	GTSAC	5 cut(s)	584, 1169, 1792, 1887, 2690
Tsp45I	GTSAC	5 cut(s)	584, 1169, 1792, 1887, 2690
TspGWI	ACGGA	4 cut(s)	161, 1704, 1995, 3062
TspMI	CCCGGG	1 cut(s)	887
TspRI	CASTG	7 cut(s)	78, 112, 1105, 1896, 2191, 2901, 2946
Vha464I	CTTAAG	1 cut(s)	2252
VpaK11BI	GGWCC	1 cut(s)	2854
VspI	ATTAAT	2 cut(s)	1278, 1710
XagI	CCTNNNNNAGG	1 cut(s)	456
XapI	RAATTY	5 cut(s)	12, 100, 430, 951, 2306
XbaI	TCTAGA	1 cut(s)	1904
XceI	RCATGY	3 cut(s)	80, 1417, 2650
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1578, 1655, 1852
XmaI	CCCGGG	1 cut(s)	887
XmaJI	CCTAGG	1 cut(s)	296
XmiI	GTMKAC	2 cut(s)	2069, 2104
XmnI	GAANNNNTTC	2 cut(s)	1524, 2234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.