Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002708

Physical Location & Seq

Genomic Coordinates Forward (+)

14952067 .. 14957206

Gene Structure 5140 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47773

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2778 bp

ATGCCGCCGGAGGCGGAAGAAGCGGAGGAGGGGGCGCAGTACTCGTTTGCTATGGAGTACAAAGGTCCTCCGGTGAGTTACGATCTTCCGAAGGCGGTTCCGATCAACGTCGACAGAATCCCCGTCGCGGCTGTCGTCGGACAGGTGTCTATTCCGGATAAGTTGTCGTTGCCGGTGGTCCAGCCGGTTCTCGCGCCCGGTTCGCTGATGAAAACGTTCTCTAAAGAGCTCAAGGCATCCCAGTCGACGGTGTCGCCGACCTCGGTGATCGCTTTCGATCGGAGGAGCGAGGACGACACGACGAAGGAGTTGGAAGGGTCGGAGTCGGCGACGGTCTCGCCGGCGTCGGTGATTGGGTTCGAGGAGAGAGCTGAGGAGAGGGGGGCTGGGTGTGGTGCTTTGTCCGGAGAATTGAGTAGCTCCGGCGGGTTGGAGTTTTCGAACGGGTTGAATTACGGGTCGGGTGAGCTGTCCGATGTGAATAATGGTAGCTGGGCTTGGAGCGGAGGAGCATTGACGGCTCCGAGTGGTGGGAAGTTGAATAGCGATTTGAATCAACCCGAACCCGATTGGGCTTCCTCCGAGTCCGTTTTGAGCTTGGACTATCCGTCTTCTCGGGTTTCCTCCACCAAGGCTGTGGATTGCGATGTGAAACGACCCGCTGTGGTGACGTTTCGGGACATTGAATCTGATGATGATGATGGTGTTGAGGAAGATGAGGCTGAGGTTGTGCCGGTGAAGCGGGAGCCTCAGAGCAAAGGAAAGAAGAAGTCTTGTTATAGATGTCTGAAGGGGACTAGGTTCACTGAGAAGGAGGTGTGCATTGTTTGTGACGCCAAGTATTGTAGTAGTTGTGTTCTGAGAGCTATGGGGTCGATGCCAGAAGGCCGAAAGTGTGTTACTTGTATTGGATTTCCTATTGATGAGAACAAAAGAGGGTGCTTGGGGAAGTGCTCTAGGATGCTCAAGCGGCTGCTGAATGATTTGGAGGTTCGGCAGGTGATGAAAGCCGAAAAGTTTTGTGAAGCAAATCAGCTACCGCCGAATTACATTTGTGTGAATGGACATCCTCTTTGTCATGAGGAGCTTGTTGTGCTACAGACCTGCTCAAACCCCCCGAAGAAGCTAAAACCAGGAAACTATTGGTATGATAAAGTTTCTGGACTTTGGGGAAAGGAAGGACAGAAGCCTTCGAAGGTAATCAGTCCCCATCTTAGTGTTGGGGGTCCCATCAAGGCAAATGCTAGTAATGGAAACACACAGGTTTTTATCAATGGCCGGGAAATTACCAAAGTTGAGCTTCGGATGTTACAGTTGGCAGGAGTTCAGTGTGCTGGTAACCCACACTTTTGGGTGAATGAGGATGGGTCATACCAAGAGGAGGGCCAGAAAAATACTAAAGGATACATATGGGGAAAGGCTGGAACCAAGCTTGTTTGTGCTGTCTTGTCACTGCCAGTGCCTTCTAAATCTTCGAATCCTTGTGGAGAACCCCTGAGCTATGTTGGTAGCAGAGTCGTCCCTGATTACATTGAGCAGAGAATACTTCAGAAAATTCTTTTAGTTGGATATAATGGATCCGGAACAAGTACTATATTCAAACAGGCCAAGATTCTATATAAAGCTATCCCTTTCTCGGAAGATGAGCGTGAAAATATCAAGTTTACAATACAGAGCAATGTATATGGCTATCTTGGTATACTACTGGAGGGACGTGAGCGTTTTGAAGAGGAAAGTTTGGCTGAGATCAGAAATCAATGTTCTTCTAGTCAAACAGATGCGAGAGGGAACAACGACAAAACTCTTTACTCCATTGGCCCGAGACTGAAAGCATTTTCTGATTGGCTTCTCAAGATAATGGTGTCAGGTGATTTGGAAGCCATTTTCCCAGCTGCTACCCGTGAATATGCACCATTGGTTGAGGAGTTGTGGAATGATTCAGCCATTCAAGCTACATTCAAGAGGAGAAGTGAATTGGAAATGTTACCTGGTGTTGCTACTTATTTCATAGGGAGGGCTGTTGACATATTAAGAGTAGACTATGAGCCCTCGGATCTGGATATTCTATACGCTGAAGGTGTTACTTCATCTAATGGGCTTGCTTGTGTAGACTTCTCATTTCCACCGTCGGCATCTGAAGATAACATCAATCATAATAATGATCAGCAGGACTCTTTGCTTAGGTACCAATTGATTAGAGTAAATGCTAGAGGACTTGGAGAAAACTGCAAATGGTTGGAGATGTTTGAAGATGTTGGAATGGTCATATTCTGTGTATCCTTGAGCGACTATGATCAGTTTTCTGTGGATGGTAGTGGGTCCTTTTCAAACAAGATGCTACAGACCAGAAGTTTCTTTGAAAGCATCATTACTCATCCAACATTTGAACATATGGACTTCCTTTTGATTCTAAACAAGTTTGATGTGCTTGAGGAAAAGGTAGAAAGGGTACCACTTACTCATTGTGACTGGTTTGATGATTTCCATCCAGTGGATAGCCGTCATCGGTCCAGCAGCAACAACAGTAGCAACAACATTAATAGTAGCCCCTCGCTGGGTCATCTAGCAGCTCACTACATTGCAGTAAAGTTCAAGAGGCTATATTCTTCTCTAACTGGAAAGAAACTGTACGTTTCTCTGGTAAAAGGGTTGCAGCCTAATAGCGTAGATGCAGCTCTTAAATATTCAAGGGAGATTTTAAAATGGGATGAAGAGAGAGGCAACTTCAGCTTTGATTACTCTGTCTATAGCACTGAGGCAAGCTCTTATTCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0004857 GO:0005095 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009898 GO:0009987 GO:0016020 GO:0016247 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0030234 GO:0030695 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034260 GO:0035639 GO:0036094 GO:0043086 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0048519 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051346 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098772 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

925

Amino Acids

102.12

Weight (kDa)

5.25

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-alpha	PF00503	517 - 898	1e-62	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23460
fragaria_vesca	FvH4_1g14590 FvH4_1g14590
malus_domestica	MD00G1067300.v1.1 MD02G1159500.v1.1
prunus_persica	Prupe.7G144400_v2.0.a1
pyrus_communis	pycom02g12580 pycom15g23720
rosa_chinensis	RchiOBHm_Chr1g0367271 RchiOBHm_Chr1g0367281 RchiOBHm_Chr1g0367331 RchiOBHm_Chr2g0103371
rosa_laevigata	RLG00000017231 RLG00000027279 RLG00000027284
rosa_multiflora	Rmu_sc0001555.1_g000003 Rmu_sc0002434.1_g000010 Rmu_sc0011000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00139680 Rroxscaffold_4G00289390 Rroxscaffold_4G00289470 Rroxscaffold_4G00289480
rosa_rugosa	Rorug02G0114700 Rorug06G0002300
rosa_samantha	Rh1AG342600 Rh1BG303200 Rh1BG303600 Rh1BG303700 Rh1CG319500 Rh1CG319700 Rh1DG335600 Rh1DG336000 Rh1DG336100 Rh2AG162700 Rh2BG169800 Rh2CG169900 Rh2DG168800
rosa_wichuraiana	Rw1G030440 Rw2G012780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	988
Acc36I	ACCTGC	2 cut(s)	988, 1112
Acc65I	GGTACC	2 cut(s)	2184, 2449
AccB1I	GGYRCC	2 cut(s)	2184, 2449
AccB7I	CCANNNNNTGG	1 cut(s)	2491
AccBSI	CCGCTC	1 cut(s)	504
AccI	GTMKAC	5 cut(s)	111, 245, 1699, 2037, 2109
AccII	CGCG	2 cut(s)	128, 194
AccIII	TCCGGA	3 cut(s)	154, 404, 1580
AclI	AACGTT	1 cut(s)	215
AclWI	GGATC	3 cut(s)	1572, 1585, 2061
AcoI	YGGCCR	1 cut(s)	1276
AcsI	RAATTY	1 cut(s)	1554
AcuI	CTGAAG	5 cut(s)	809, 1532, 2094, 2157, 2710
AcyI	GRCGYC	2 cut(s)	344, 834
AfaI	GTAC	6 cut(s)	41, 59, 1591, 2186, 2451, 2630
AfiI	CCNNNNNNNGG	8 cut(s)	127, 247, 530, 1381, 1636, 2491, 2554, 2555
AhdI	GACNNNNNGTC	1 cut(s)	607
AjiI	CACGTC	1 cut(s)	1715
AjnI	CCWGG	2 cut(s)	1132, 1987
Alw21I	GWGCWC	2 cut(s)	231, 956
Alw26I	GTCTC	2 cut(s)	340, 1816
AlwI	GGATC	3 cut(s)	1572, 1585, 2061
Ama87I	CYCGRG	2 cut(s)	615, 1819
Aor13HI	TCCGGA	3 cut(s)	154, 404, 1580
AoxI	GGCC	5 cut(s)	886, 1276, 1384, 1605, 1816
ApeKI	GCWGC	6 cut(s)	973, 1892, 2514, 2567, 2653, 2672
ApoI	RAATTY	1 cut(s)	1554
ArsI	GACNNNNNNTTYG	2 cut(s)	1056, 1088
AseI	ATTAAT	1 cut(s)	2538
Asp700I	GAANNNNTTC	1 cut(s)	215
Asp718I	GGTACC	2 cut(s)	2184, 2449
AspLEI	GCGC	2 cut(s)	37, 196
AspS9I	GGNCC	7 cut(s)	65, 178, 1226, 1384, 1817, 2319, 2508
AsuC2I	CCSGG	2 cut(s)	198, 1280
AsuHPI	GGTGA	9 cut(s)	85, 277, 361, 476, 679, 748, 1012, 1366, 1880
AsuII	TTCGAA	3 cut(s)	440, 1193, 1475
AvaI	CYCGRG	2 cut(s)	615, 1819
AvaII	GGWCC	5 cut(s)	65, 178, 1226, 2319, 2508
BamHI	GGATCC	1 cut(s)	1577
BanI	GGYRCC	2 cut(s)	2184, 2449
BanII	GRGCYC	2 cut(s)	231, 2049
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	2 cut(s)	231, 956
BbvCI	CCTCAGC	2 cut(s)	372, 723
BbvI	GCAGC	6 cut(s)	960, 1879, 2526, 2579, 2665, 2684
BccI	CCATC	6 cut(s)	695, 1218, 1238, 1358, 2303, 2493
BceAI	ACGGC	2 cut(s)	534, 2484
BcgI	CGANNNNNNTGC	2 cut(s)	225, 259
BciT130I	CCWGG	2 cut(s)	1134, 1989
BciVI	GTATCC	2 cut(s)	1397, 2287
BclI	TGATCA	2 cut(s)	2161, 2293
BcnI	CCSGG	2 cut(s)	198, 1280
BcoDI	GTCTC	2 cut(s)	340, 1816
BfaI	CTAG	6 cut(s)	798, 957, 1245, 1767, 2208, 2564
BfmI	CTRYAG	3 cut(s)	1097, 2339, 2746
BfuAI	ACCTGC	2 cut(s)	988, 1112
BfuI	GTATCC	2 cut(s)	1397, 2287
BisI	GCNGC	9 cut(s)	5, 129, 971, 974, 1893, 2515, 2568, 2654, 2673
BlsI	GCNGC	9 cut(s)	6, 130, 972, 975, 1894, 2516, 2569, 2655, 2674
BmcAI	AGTACT	2 cut(s)	41, 1591
Bme1390I	CCNGG	4 cut(s)	198, 1134, 1280, 1989
Bme18I	GGWCC	5 cut(s)	65, 178, 1226, 2319, 2508
BmeRI	GACNNNNNGTC	1 cut(s)	607
BmeT110I	CYCGRG	2 cut(s)	615, 1819
BmgBI	CACGTC	1 cut(s)	1715
BmgT120I	GGNCC	7 cut(s)	65, 178, 1226, 1384, 1817, 2319, 2508
BmrFI	CCNGG	4 cut(s)	198, 1134, 1280, 1989
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	8 cut(s)	245, 867, 951, 1768, 2141, 2325, 2373, 2659
BmuI	ACTGGG	1 cut(s)	235
BoxI	GACNNNNGTC	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	603
BplI	GAGNNNNNCTC	1 cut(s)	2747
BpmI	CTGGAG	1 cut(s)	1727
Bpu10I	CCTNAGC	4 cut(s)	372, 723, 1496, 2180
Bpu14I	TTCGAA	3 cut(s)	440, 1193, 1475
BpuEI	CTTGAG	5 cut(s)	215, 950, 1835, 2302, 2450
BpuMI	CCSGG	2 cut(s)	198, 1280
BsaBI	GATNNNNATC	2 cut(s)	552, 2484
BsaHI	GRCGYC	2 cut(s)	344, 834
BsaI	GGTCTC	1 cut(s)	340
BsaJI	CCNNGG	3 cut(s)	261, 630, 2049
BsaWI	WCCGGW	4 cut(s)	70, 154, 404, 1580
Bsc4I	CCNNNNNNNGG	8 cut(s)	127, 247, 530, 1381, 1636, 2491, 2554, 2555
Bse118I	RCCGGY	4 cut(s)	172, 184, 340, 733
Bse1I	ACTGG	6 cut(s)	241, 1457, 1710, 2474, 2489, 2620
Bse3DI	GCAATG	2 cut(s)	1684, 2577
Bse8I	GATNNNNATC	2 cut(s)	552, 2484
BseAI	TCCGGA	3 cut(s)	154, 404, 1580
BseBI	CCWGG	2 cut(s)	1134, 1989
BseDI	CCNNGG	3 cut(s)	261, 630, 2049
BseGI	GGATG	9 cut(s)	236, 966, 1066, 1311, 1369, 2314, 2374, 2485, 2713
BseJI	GATNNNNATC	2 cut(s)	552, 2484
BseLI	CCNNNNNNNGG	8 cut(s)	127, 247, 530, 1381, 1636, 2491, 2554, 2555
BseMI	GCAATG	2 cut(s)	1684, 2577
BseMII	CTCAG	8 cut(s)	363, 714, 764, 798, 851, 1487, 1734, 2745
BseNI	ACTGG	6 cut(s)	241, 1457, 1710, 2474, 2489, 2620
BseRI	GAGGAG	9 cut(s)	41, 298, 377, 389, 522, 1097, 1394, 1937, 1978
BseXI	GCAGC	6 cut(s)	960, 1879, 2526, 2579, 2665, 2684
BseYI	CCCAGC	4 cut(s)	386, 492, 1888, 2554
Bsh1236I	CGCG	2 cut(s)	128, 194
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	5 cut(s)	888, 1278, 1386, 1607, 1818
BshNI	GGYRCC	2 cut(s)	2184, 2449
BsiEI	CGRYCG	1 cut(s)	280
BsiHKAI	GWGCWC	2 cut(s)	231, 956
BsiHKCI	CYCGRG	2 cut(s)	615, 1819
BslFI	GGGAC	6 cut(s)	692, 808, 1191, 1212, 1505, 1725
BslI	CCNNNNNNNGG	8 cut(s)	127, 247, 530, 1381, 1636, 2491, 2554, 2555
BsmAI	GTCTC	2 cut(s)	340, 1816
BsmFI	GGGAC	6 cut(s)	692, 808, 1191, 1212, 1505, 1725
BsnI	GGCC	5 cut(s)	888, 1278, 1386, 1607, 1818
Bso31I	GGTCTC	1 cut(s)	340
BsoBI	CYCGRG	2 cut(s)	615, 1819
Bsp119I	TTCGAA	3 cut(s)	440, 1193, 1475
Bsp1286I	GDGCHC	3 cut(s)	231, 956, 2049
Bsp13I	TCCGGA	3 cut(s)	154, 404, 1580
Bsp143I	GATC	9 cut(s)	82, 102, 267, 277, 1577, 1746, 2053, 2161, 2293
BspANI	GGCC	5 cut(s)	888, 1278, 1386, 1607, 1818
BspCNI	CTCAG	8 cut(s)	364, 715, 763, 799, 852, 1488, 1735, 2746
BspEI	TCCGGA	3 cut(s)	154, 404, 1580
BspFNI	CGCG	2 cut(s)	128, 194
BspHI	TCATGA	1 cut(s)	1078
BspMI	ACCTGC	2 cut(s)	988, 1112
BspPI	GGATC	3 cut(s)	1572, 1585, 2061
BspT104I	TTCGAA	3 cut(s)	440, 1193, 1475
BspT107I	GGYRCC	2 cut(s)	2184, 2449
BspTNI	GGTCTC	1 cut(s)	340
BsrBI	CCGCTC	1 cut(s)	504
BsrDI	GCAATG	2 cut(s)	1684, 2577
BsrFI	RCCGGY	4 cut(s)	172, 184, 340, 733
BsrI	ACTGG	6 cut(s)	241, 1457, 1710, 2474, 2489, 2620
BssAI	RCCGGY	4 cut(s)	172, 184, 340, 733
BssECI	CCNNGG	3 cut(s)	261, 630, 2049
BssMI	GATC	9 cut(s)	82, 102, 267, 277, 1577, 1746, 2053, 2161, 2293
BssNAI	GTATAC	1 cut(s)	1700
BssNI	GRCGYC	2 cut(s)	344, 834
BssT1I	CCWWGG	1 cut(s)	630
Bst1107I	GTATAC	1 cut(s)	1700
Bst2UI	CCWGG	2 cut(s)	1134, 1989
Bst4CI	ACNGT	6 cut(s)	250, 334, 1314, 2127, 2525, 2628
Bst6I	CTCTTC	2 cut(s)	1722, 2706
BstACI	GRCGYC	2 cut(s)	344, 834
BstBI	TTCGAA	3 cut(s)	440, 1193, 1475
BstC8I	GCNNGC	3 cut(s)	342, 2100, 2761
BstEII	GGTNACC	1 cut(s)	1337
BstF5I	GGATG	9 cut(s)	236, 966, 1066, 1311, 1369, 2314, 2374, 2485, 2713
BstFNI	CGCG	2 cut(s)	128, 194
BstHHI	GCGC	2 cut(s)	37, 196
BstKTI	GATC	9 cut(s)	85, 105, 270, 280, 1580, 1749, 2056, 2164, 2296
BstMAI	GTCTC	2 cut(s)	340, 1816
BstMBI	GATC	9 cut(s)	82, 102, 267, 277, 1577, 1746, 2053, 2161, 2293
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	8 cut(s)	20, 202, 518, 739, 970, 1093, 1949, 2727
BstNI	CCWGG	2 cut(s)	1134, 1989
BstPAI	GACNNNNGTC	1 cut(s)	145
BstPI	GGTNACC	1 cut(s)	1337
BstSCI	CCNGG	4 cut(s)	196, 1132, 1278, 1987
BstSFI	CTRYAG	3 cut(s)	1097, 2339, 2746
BstUI	CGCG	2 cut(s)	128, 194
BstV1I	GCAGC	6 cut(s)	960, 1879, 2526, 2579, 2665, 2684
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	2 cut(s)	1577, 2053
BstXI	CCANNNNNNTGG	2 cut(s)	637, 1350
BstYI	RGATCY	2 cut(s)	1577, 2053
BstZ17I	GTATAC	1 cut(s)	1700
BsuI	GTATCC	2 cut(s)	1397, 2287
BsuRI	GGCC	5 cut(s)	888, 1278, 1386, 1607, 1818
BtgZI	GCGATG	1 cut(s)	660
BtrI	CACGTC	1 cut(s)	1715
BtsCI	GGATG	9 cut(s)	236, 966, 1066, 1311, 1369, 2314, 2374, 2485, 2713
BtsI	GCAGTG	1 cut(s)	1451
BtsIMutI	CAGTG	6 cut(s)	804, 1334, 1451, 1464, 2496, 2751
BveI	ACCTGC	2 cut(s)	988, 1112
Cac8I	GCNNGC	3 cut(s)	342, 2100, 2761
CciI	TCATGA	1 cut(s)	1078
CfoI	GCGC	2 cut(s)	37, 196
Cfr10I	RCCGGY	4 cut(s)	172, 184, 340, 733
Cfr13I	GGNCC	7 cut(s)	65, 178, 1226, 1384, 1817, 2319, 2508
CseI	GACGC	2 cut(s)	333, 842
CsiI	ACCWGGT	1 cut(s)	1987
Csp6I	GTAC	6 cut(s)	40, 58, 1590, 2185, 2450, 2629
CviAII	CATG	1 cut(s)	1079
CviQI	GTAC	6 cut(s)	40, 58, 1590, 2185, 2450, 2629
DpnI	GATC	9 cut(s)	84, 104, 269, 279, 1579, 1748, 2055, 2163, 2295
DpnII	GATC	9 cut(s)	82, 102, 267, 277, 1577, 1746, 2053, 2161, 2293
DraI	TTTAAA	1 cut(s)	2700
DriI	GACNNNNNGTC	1 cut(s)	607
EaeI	YGGCCR	1 cut(s)	1276
Eam1104I	CTCTTC	2 cut(s)	1722, 2706
Eam1105I	GACNNNNNGTC	1 cut(s)	607
EarI	CTCTTC	2 cut(s)	1722, 2706
EciI	GGCGGA	1 cut(s)	29
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	630
Eco24I	GRGCYC	2 cut(s)	231, 2049
Eco31I	GGTCTC	1 cut(s)	340
Eco47I	GGWCC	5 cut(s)	65, 178, 1226, 2319, 2508
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	5 cut(s)	809, 1532, 2094, 2157, 2710
Eco88I	CYCGRG	2 cut(s)	615, 1819
Eco91I	GGTNACC	1 cut(s)	1337
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	3 cut(s)	65, 1226, 2319
EcoO65I	GGTNACC	1 cut(s)	1337
EcoRII	CCWGG	2 cut(s)	1132, 1987
EcoT14I	CCWWGG	1 cut(s)	630
EcoT38I	GRGCYC	2 cut(s)	231, 2049
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	1 cut(s)	1082
FalI	AAGNNNNNCTT	2 cut(s)	1284, 1316
FaqI	GGGAC	6 cut(s)	692, 808, 1191, 1212, 1505, 1725
FatI	CATG	1 cut(s)	1078
FauI	CCCGC	3 cut(s)	419, 667, 735
FauNDI	CATATG	2 cut(s)	1409, 2391
FbaI	TGATCA	2 cut(s)	2161, 2293
FblI	GTMKAC	5 cut(s)	111, 245, 1699, 2037, 2109
Fnu4HI	GCNGC	9 cut(s)	5, 129, 971, 974, 1893, 2515, 2568, 2654, 2673
FokI	GGATG	9 cut(s)	223, 973, 1053, 1318, 1376, 2321, 2361, 2472, 2720
FriOI	GRGCYC	2 cut(s)	231, 2049
Fsp4HI	GCNGC	9 cut(s)	5, 129, 971, 974, 1893, 2515, 2568, 2654, 2673
FspBI	CTAG	6 cut(s)	798, 957, 1245, 1767, 2208, 2564
GlaI	GCGC	2 cut(s)	36, 195
GluI	GCNGC	9 cut(s)	5, 129, 971, 974, 1893, 2515, 2568, 2654, 2673
GsaI	CCCAGC	4 cut(s)	390, 496, 1892, 2558
GsuI	CTGGAG	1 cut(s)	1727
HaeIII	GGCC	5 cut(s)	888, 1278, 1386, 1607, 1818
HgaI	GACGC	2 cut(s)	333, 842
HhaI	GCGC	2 cut(s)	37, 196
Hin1I	GRCGYC	2 cut(s)	344, 834
Hin1II	CATG	1 cut(s)	1082
Hin6I	GCGC	2 cut(s)	35, 194
HinP1I	GCGC	2 cut(s)	35, 194
HincII	GTYRAC	3 cut(s)	112, 246, 2023
HindII	GTYRAC	3 cut(s)	112, 246, 2023
HindIII	AAGCTT	1 cut(s)	1430
HphI	GGTGA	9 cut(s)	85, 277, 361, 476, 679, 748, 1012, 1366, 1880
Hpy166II	GTNNAC	8 cut(s)	112, 246, 804, 1665, 1700, 2023, 2038, 2110
Hpy8I	GTNNAC	8 cut(s)	112, 246, 804, 1665, 1700, 2023, 2038, 2110
Hpy99I	CGWCG	8 cut(s)	113, 128, 140, 250, 304, 334, 349, 2131
HpyCH4III	ACNGT	6 cut(s)	250, 334, 1314, 2127, 2525, 2628
HpyCH4IV	ACGT	5 cut(s)	108, 215, 671, 1714, 2631
HpyCH4V	TGCA	6 cut(s)	822, 1910, 2229, 2582, 2653, 2672
HpyF10VI	GCNNNNNNNGC	8 cut(s)	20, 202, 518, 739, 970, 1093, 1949, 2727
HpySE526I	ACGT	5 cut(s)	108, 215, 671, 1714, 2631
Hsp92I	GRCGYC	2 cut(s)	344, 834
Hsp92II	CATG	1 cut(s)	1082
HspAI	GCGC	2 cut(s)	35, 194
KflI	GGGWCCC	1 cut(s)	1226
Kpn2I	TCCGGA	3 cut(s)	154, 404, 1580
KpnI	GGTACC	2 cut(s)	2188, 2453
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
Ksp22I	TGATCA	2 cut(s)	2161, 2293
Kzo9I	GATC	9 cut(s)	82, 102, 267, 277, 1577, 1746, 2053, 2161, 2293
LmnI	GCTCC	7 cut(s)	285, 425, 501, 509, 526, 745, 1084
Lsp1109I	GCAGC	6 cut(s)	960, 1879, 2526, 2579, 2665, 2684
LweI	GCATC	8 cut(s)	245, 867, 951, 1768, 2141, 2325, 2373, 2659
MabI	ACCWGGT	1 cut(s)	1987
MaeI	CTAG	6 cut(s)	798, 957, 1245, 1767, 2208, 2564
MaeII	ACGT	5 cut(s)	108, 215, 671, 1714, 2631
MalI	GATC	9 cut(s)	84, 104, 269, 279, 1579, 1748, 2055, 2163, 2295
MbiI	CCGCTC	1 cut(s)	504
MboI	GATC	9 cut(s)	82, 102, 267, 277, 1577, 1746, 2053, 2161, 2293
MfeI	CAATTG	1 cut(s)	2189
MflI	RGATCY	2 cut(s)	1577, 2053
MhlI	GDGCHC	3 cut(s)	231, 956, 2049
MluCI	AATT	7 cut(s)	410, 451, 1045, 1284, 1554, 1973, 2189
MlyI	GAGTC	4 cut(s)	332, 593, 1524, 2165
MmeI	TCCRAC	8 cut(s)	118, 291, 300, 411, 1546, 2217, 2236, 2402
MreI	CGCCGGCG	1 cut(s)	340
MroI	TCCGGA	3 cut(s)	154, 404, 1580
MroNI	GCCGGC	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	215
MseI	TTAA	4 cut(s)	2030, 2538, 2679, 2699
MslI	CAYNNNNRTG	3 cut(s)	1055, 1215, 2157
MspA1I	CMGCKG	2 cut(s)	662, 1892
MspR9I	CCNGG	4 cut(s)	198, 1134, 1280, 1989
MunI	CAATTG	1 cut(s)	2189
MvaI	CCWGG	2 cut(s)	1134, 1989
MvnI	CGCG	2 cut(s)	128, 194
MwoI	GCNNNNNNNGC	8 cut(s)	20, 202, 518, 739, 970, 1093, 1949, 2727
NaeI	GCCGGC	1 cut(s)	342
NciI	CCSGG	2 cut(s)	198, 1280
NdeI	CATATG	2 cut(s)	1409, 2391
NdeII	GATC	9 cut(s)	82, 102, 267, 277, 1577, 1746, 2053, 2161, 2293
NgoMIV	GCCGGC	1 cut(s)	340
NlaIII	CATG	1 cut(s)	1082
NmuCI	GTSAC	4 cut(s)	667, 830, 1449, 2465
NspV	TTCGAA	3 cut(s)	440, 1193, 1475
PagI	TCATGA	1 cut(s)	1078
PaqCI	CACCTGC	1 cut(s)	988
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 254, 326
PdiI	GCCGGC	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	7 cut(s)	117, 553, 686, 1477, 1612, 1937, 2407
PflFI	GACNNNGTC	1 cut(s)	250
PflMI	CCANNNNNTGG	1 cut(s)	2491
PkrI	GCNGC	9 cut(s)	6, 130, 972, 975, 1894, 2516, 2569, 2655, 2674
Ple19I	CGATCG	1 cut(s)	280
PleI	GAGTC	4 cut(s)	331, 592, 1523, 2165
PpsI	GAGTC	4 cut(s)	331, 592, 1523, 2165
PpuMI	RGGWCCY	3 cut(s)	65, 1226, 2319
PshAI	GACNNNNGTC	1 cut(s)	145
PshBI	ATTAAT	1 cut(s)	2538
Psp124BI	GAGCTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	215
Psp5II	RGGWCCY	3 cut(s)	65, 1226, 2319
Psp6I	CCWGG	2 cut(s)	1132, 1987
PspEI	GGTNACC	1 cut(s)	1337
PspFI	CCCAGC	4 cut(s)	386, 492, 1888, 2554
PspGI	CCWGG	2 cut(s)	1132, 1987
PspPI	GGNCC	7 cut(s)	65, 178, 1226, 1384, 1817, 2319, 2508
PspPPI	RGGWCCY	3 cut(s)	65, 1226, 2319
PsuI	RGATCY	2 cut(s)	1577, 2053
PsyI	GACNNNGTC	1 cut(s)	250
PvuI	CGATCG	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	1892
RsaI	GTAC	6 cut(s)	41, 59, 1591, 2186, 2451, 2630
RsaNI	GTAC	6 cut(s)	40, 58, 1590, 2185, 2450, 2629
RseI	CAYNNNNRTG	3 cut(s)	1055, 1215, 2157
SacI	GAGCTC	1 cut(s)	231
SalI	GTCGAC	2 cut(s)	110, 244
SaqAI	TTAA	4 cut(s)	2030, 2538, 2679, 2699
SatI	GCNGC	9 cut(s)	5, 129, 971, 974, 1893, 2515, 2568, 2654, 2673
Sau3AI	GATC	9 cut(s)	82, 102, 267, 277, 1577, 1746, 2053, 2161, 2293
Sau96I	GGNCC	7 cut(s)	65, 178, 1226, 1384, 1817, 2319, 2508
ScaI	AGTACT	2 cut(s)	41, 1591
SchI	GAGTC	4 cut(s)	332, 593, 1524, 2165
ScrFI	CCNGG	4 cut(s)	198, 1134, 1280, 1989
SduI	GDGCHC	3 cut(s)	231, 956, 2049
SexAI	ACCWGGT	1 cut(s)	1987
SfaNI	GCATC	8 cut(s)	245, 867, 951, 1768, 2141, 2325, 2373, 2659
SfcI	CTRYAG	3 cut(s)	1097, 2339, 2746
SfuI	TTCGAA	3 cut(s)	440, 1193, 1475
SgrAI	CRCCGGYG	1 cut(s)	340
SinI	GGWCC	5 cut(s)	65, 178, 1226, 2319, 2508
SmiMI	CAYNNNNRTG	3 cut(s)	1055, 1215, 2157
SmlI	CTYRAG	5 cut(s)	230, 965, 1850, 2281, 2429
SmoI	CTYRAG	5 cut(s)	230, 965, 1850, 2281, 2429
Sse9I	AATT	7 cut(s)	410, 451, 1045, 1284, 1554, 1973, 2189
SspI	AATATT	1 cut(s)	2684
SspMI	CTAG	6 cut(s)	798, 957, 1245, 1767, 2208, 2564
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	4 cut(s)	196, 1132, 1278, 1987
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	6 cut(s)	250, 334, 1314, 2127, 2525, 2628
TaiI	ACGT	5 cut(s)	111, 218, 674, 1717, 2634
TaqI	TCGA	8 cut(s)	111, 245, 276, 360, 440, 875, 1193, 1475
TaqII	GACCGA	1 cut(s)	2496
TasI	AATT	7 cut(s)	410, 451, 1045, 1284, 1554, 1973, 2189
TatI	WGTACW	3 cut(s)	39, 57, 1589
TauI	GCSGC	3 cut(s)	7, 131, 973
TfiI	GAWTC	7 cut(s)	117, 553, 686, 1477, 1612, 1937, 2407
Tru1I	TTAA	4 cut(s)	2030, 2538, 2679, 2699
Tru9I	TTAA	4 cut(s)	2030, 2538, 2679, 2699
TscAI	CASTG	6 cut(s)	811, 1334, 1458, 1464, 2496, 2758
TseFI	GTSAC	4 cut(s)	667, 830, 1449, 2465
TseI	GCWGC	6 cut(s)	973, 1892, 2514, 2567, 2653, 2672
Tsp45I	GTSAC	4 cut(s)	667, 830, 1449, 2465
TspDTI	ATGAA	5 cut(s)	224, 1019, 1996, 2076, 2724
TspGWI	ACGGA	2 cut(s)	577, 597
TspRI	CASTG	6 cut(s)	811, 1334, 1458, 1464, 2496, 2758
Tth111I	GACNNNGTC	1 cut(s)	250
Van91I	CCANNNNNTGG	1 cut(s)	2491
VpaK11BI	GGWCC	5 cut(s)	65, 178, 1226, 2319, 2508
VspI	ATTAAT	1 cut(s)	2538
XapI	RAATTY	1 cut(s)	1554
XcmI	CCANNNNNNNNNTGG	3 cut(s)	634, 1140, 1217
XmiI	GTMKAC	5 cut(s)	111, 245, 1699, 2037, 2109
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	6 cut(s)	798, 957, 1245, 1767, 2208, 2564
ZrmI	AGTACT	2 cut(s)	41, 1591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.