Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002708

Physical Location & Seq

Genomic Coordinates Reverse (-)

10093636 .. 10095882

Gene Structure 2247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGAGTTCAATGTGCTGCTGATACACACTTTTGGGTGTATAACGATGGGCGGTACGAATTGGTGGGCCAGAAAAGTATAAAAGGATACATATGGGGCACAGCTGCAACAAAGCTTGTATGTGCTGTCTTGTCACTGCCGGTTCCTTCTAAATCTTCAAATCCTGTCATCCCTGATATAATTGAGCAGAGAACTCAGAAGTCAGAACATTCTTTTAGGAATAATGCCAAAACCCCTTACTCCATTGGCCCAAAGCTGAAAGCATTCTCTGATTGGCTTCTTAAGACTAAGGCGTCAGGCTATCTAGAAGCCATCTTCCCAGCTGCTACCTTTGAATTTGCACCATTTGTGGAGGAGTTATGGAATGATTCAGCCATTCAGGCCACATACAAGCGAGTAAACTATGAGCCCACAGATCGAGACATCCTATATGCTGAAGGTGACACTTCAGCTAATGGGTTGGCTTGCGTGGACTTCTCATTTCCCCAGTCAGAATTTGGATATGAGAATAATACTACTGATCAGCATGACTCATTGCTTAGGAACCAACTTATTAGAGTCGGTGAAGGACTCGGAGAAAGCTGCCAATGGTTGGAGACGTTTGGGGATGCTGGACTGGTCATCTTCTGTCTGTCCTTGAGTGACTATGATCAGTTTTCTGCTGATGGTAACAGCTCTATCACTAACAAGATGTTACAGAGCAGAGCTGTATTTGAAAGCATTGTTACTCATCCAAGCTTTGAGAAGATGAACTGCCTTTTGCTTCTAAGCAAGTTTGATTTGTTTGTGAAAAAGATAGCACGGGTACCGCTAACTCAGTGCGACTGGTTTGATGATTTTAAGCCATTGCTTAGCTATGATCTGGGTCAACCAGCATATGAGTACGTAGCAGTGAAGTTCAAGAGGCTCTACTCCTCTCTAACCAACAAGAAATTGTATGTTTCTCTGGTGGAGGATTTTGAGACTGATTCCGTAATTGGAGCCCTTAAATATTCAACAGAGATTTTAAAATGGGACAATTTGATAGGCAATTGCTATTTGTCAATTCAAGATTATTCCATTTGTTCATCGATGACATCAGGGCCCGCCCTCTCAATCAGTTTCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0004857 GO:0005095 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009898 GO:0009987 GO:0016020 GO:0016247 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0030234 GO:0030695 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034260 GO:0035639 GO:0036094 GO:0043086 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0048519 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051346 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098772 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

369

Amino Acids

41.48

Weight (kDa)

5.03

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-alpha	PF00503	133 - 331	8.4e-33	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23460
fragaria_vesca	FvH4_1g14590 FvH4_1g14590
malus_domestica	MD00G1067300.v1.1 MD02G1159500.v1.1
prunus_persica	Prupe.7G144400_v2.0.a1
pyrus_communis	pycom02g12580 pycom15g23720
rosa_chinensis	RchiOBHm_Chr1g0367271 RchiOBHm_Chr1g0367281 RchiOBHm_Chr1g0367331 RchiOBHm_Chr2g0103371
rosa_laevigata	RLG00000017231 RLG00000027279 RLG00000027284
rosa_multiflora	Rmu_sc0001555.1_g000003 Rmu_sc0002434.1_g000010 Rmu_sc0011000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00139680 Rroxscaffold_4G00289390 Rroxscaffold_4G00289470 Rroxscaffold_4G00289480
rosa_rugosa	Rorug02G0114700 Rorug06G0002300
rosa_samantha	Rh1AG342600 Rh1BG303200 Rh1BG303600 Rh1BG303700 Rh1CG319500 Rh1CG319700 Rh1DG335600 Rh1DG336000 Rh1DG336100 Rh2AG162700 Rh2BG169800 Rh2CG169900 Rh2DG168800
rosa_wichuraiana	Rw1G030440 Rw2G012780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	292
Acc65I	GGTACC	1 cut(s)	805
AccB1I	GGYRCC	1 cut(s)	805
AccB7I	CCANNNNNTGG	1 cut(s)	592
AciI	CCGC	3 cut(s)	52, 809, 1086
AcsI	RAATTY	2 cut(s)	335, 494
AcuI	CTGAAG	2 cut(s)	432, 456
AcyI	GRCGYC	1 cut(s)	293
AfaI	GTAC	3 cut(s)	56, 807, 884
AfiI	CCNNNNNNNGG	1 cut(s)	592
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	7 cut(s)	11, 159, 335, 716, 901, 996, 1049
Alw26I	GTCTC	3 cut(s)	414, 590, 956
AoxI	GGCC	4 cut(s)	67, 247, 381, 1082
ApaI	GGGCCC	1 cut(s)	1086
ApeKI	GCWGC	4 cut(s)	17, 104, 323, 582
ApoI	RAATTY	2 cut(s)	335, 494
Asp700I	GAANNNNTTC	1 cut(s)	263
Asp718I	GGTACC	1 cut(s)	805
AspS9I	GGNCC	4 cut(s)	67, 248, 1082, 1083
AsuHPI	GGTGA	2 cut(s)	452, 575
BaeGI	GKGCMC	2 cut(s)	101, 1086
BanI	GGYRCC	1 cut(s)	805
BanII	GRGCYC	3 cut(s)	411, 985, 1086
BbvI	GCAGC	4 cut(s)	4, 91, 310, 569
BccI	CCATC	3 cut(s)	41, 320, 659
BciVI	GTATCC	1 cut(s)	80
BclI	TGATCA	2 cut(s)	520, 649
BcoDI	GTCTC	3 cut(s)	414, 590, 956
BfaI	CTAG	1 cut(s)	305
BfrI	CTTAAG	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	80
BglI	GCCNNNNNGGC	1 cut(s)	380
BisI	GCNGC	4 cut(s)	18, 105, 324, 583
BlpI	GCTNAGC	1 cut(s)	851
BlsI	GCNGC	4 cut(s)	19, 106, 325, 584
BmgT120I	GGNCC	4 cut(s)	67, 248, 1082, 1083
BmiI	GGNNCC	5 cut(s)	144, 545, 807, 982, 1084
BmrI	ACTGGG	1 cut(s)	481
BmsI	GCATC	1 cut(s)	598
BmuI	ACTGGG	1 cut(s)	481
Bpu10I	CCTNAGC	1 cut(s)	539
Bpu1102I	GCTNAGC	1 cut(s)	851
BpuEI	CTTGAG	1 cut(s)	658
Bsa29I	ATCGAT	1 cut(s)	1070
BsaAI	YACGTR	1 cut(s)	886
BsaHI	GRCGYC	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	592
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	3 cut(s)	487, 621, 830
Bse3DI	GCAATG	2 cut(s)	533, 845
BseCI	ATCGAT	1 cut(s)	1070
BseGI	GGATG	4 cut(s)	168, 423, 613, 730
BseLI	CCNNNNNNNGG	1 cut(s)	592
BseMI	GCAATG	2 cut(s)	533, 845
BseMII	CTCAG	2 cut(s)	209, 830
BseNI	ACTGG	3 cut(s)	487, 621, 830
BseRI	GAGGAG	2 cut(s)	368, 904
BseSI	GKGCMC	2 cut(s)	101, 1086
BseXI	GCAGC	4 cut(s)	4, 91, 310, 569
BseYI	CCCAGC	1 cut(s)	319
BshFI	GGCC	4 cut(s)	69, 249, 383, 1084
BshNI	GGYRCC	1 cut(s)	805
BshVI	ATCGAT	1 cut(s)	1070
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	1028
BslI	CCNNNNNNNGG	1 cut(s)	592
BsmAI	GTCTC	3 cut(s)	414, 590, 956
BsmBI	CGTCTC	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	1028
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	4 cut(s)	69, 249, 383, 1084
Bsp120I	GGGCCC	1 cut(s)	1082
Bsp1286I	GDGCHC	4 cut(s)	101, 411, 985, 1086
Bsp143I	GATC	4 cut(s)	415, 520, 649, 859
Bsp1720I	GCTNAGC	1 cut(s)	851
BspACI	CCGC	3 cut(s)	52, 809, 1086
BspANI	GGCC	4 cut(s)	69, 249, 383, 1084
BspCNI	CTCAG	2 cut(s)	208, 829
BspDI	ATCGAT	1 cut(s)	1070
BspLI	GGNNCC	5 cut(s)	144, 545, 807, 982, 1084
BspT107I	GGYRCC	1 cut(s)	805
BspTI	CTTAAG	1 cut(s)	281
BsrDI	GCAATG	2 cut(s)	533, 845
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	3 cut(s)	487, 621, 830
BssAI	RCCGGY	1 cut(s)	139
BssMI	GATC	4 cut(s)	415, 520, 649, 859
BssNI	GRCGYC	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	293
BstAFI	CTTAAG	1 cut(s)	281
BstBAI	YACGTR	1 cut(s)	886
BstC8I	GCNNGC	2 cut(s)	466, 1086
BstDEI	CTNAG	6 cut(s)	195, 288, 539, 767, 816, 851
BstF5I	GGATG	4 cut(s)	168, 423, 613, 730
BstKTI	GATC	4 cut(s)	418, 523, 652, 862
BstMAI	GTCTC	3 cut(s)	414, 590, 956
BstMBI	GATC	4 cut(s)	415, 520, 649, 859
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstSLI	GKGCMC	2 cut(s)	101, 1086
BstSNI	TACGTA	1 cut(s)	886
BstV1I	GCAGC	4 cut(s)	4, 91, 310, 569
Bsu15I	ATCGAT	1 cut(s)	1070
BsuI	GTATCC	1 cut(s)	80
BsuRI	GGCC	4 cut(s)	69, 249, 383, 1084
BsuTUI	ATCGAT	1 cut(s)	1070
BtsCI	GGATG	4 cut(s)	168, 423, 613, 730
BtsI	GCAGTG	2 cut(s)	134, 897
BtsIMutI	CAGTG	3 cut(s)	134, 824, 897
Cac8I	GCNNGC	2 cut(s)	466, 1086
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	4 cut(s)	67, 248, 1082, 1083
ClaI	ATCGAT	1 cut(s)	1070
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	3 cut(s)	55, 806, 883
CviAII	CATG	1 cut(s)	527
CviQI	GTAC	3 cut(s)	55, 806, 883
DdeI	CTNAG	6 cut(s)	195, 288, 539, 767, 816, 851
DpnI	GATC	4 cut(s)	417, 522, 651, 861
DpnII	GATC	4 cut(s)	415, 520, 649, 859
DraI	TTTAAA	1 cut(s)	1008
DrdI	GACNNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	292
Eco105I	TACGTA	1 cut(s)	886
Eco24I	GRGCYC	3 cut(s)	411, 985, 1086
Eco57I	CTGAAG	2 cut(s)	432, 456
EcoO109I	RGGNCCY	1 cut(s)	1082
EcoT38I	GRGCYC	3 cut(s)	411, 985, 1086
Esp3I	CGTCTC	1 cut(s)	590
FaeI	CATG	1 cut(s)	530
FaqI	GGGAC	1 cut(s)	1028
FatI	CATG	1 cut(s)	526
FauI	CCCGC	1 cut(s)	1093
FauNDI	CATATG	2 cut(s)	92, 877
FbaI	TGATCA	2 cut(s)	520, 649
Fnu4HI	GCNGC	4 cut(s)	18, 105, 324, 583
FokI	GGATG	4 cut(s)	155, 410, 620, 717
FriOI	GRGCYC	3 cut(s)	411, 985, 1086
Fsp4HI	GCNGC	4 cut(s)	18, 105, 324, 583
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	4 cut(s)	18, 105, 324, 583
GsaI	CCCAGC	1 cut(s)	323
HaeIII	GGCC	4 cut(s)	69, 249, 383, 1084
HapII	CCGG	1 cut(s)	140
HgaI	GACGC	1 cut(s)	282
Hin1I	GRCGYC	1 cut(s)	293
Hin1II	CATG	1 cut(s)	530
HincII	GTYRAC	1 cut(s)	869
HindII	GTYRAC	1 cut(s)	869
HindIII	AAGCTT	2 cut(s)	113, 736
HinfI	GANTC	5 cut(s)	368, 530, 558, 570, 968
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	2 cut(s)	452, 575
Hpy166II	GTNNAC	3 cut(s)	400, 472, 869
Hpy188I	TCNGA	6 cut(s)	198, 205, 271, 493, 575, 1106
Hpy188III	TCNNGA	4 cut(s)	305, 419, 901, 1049
Hpy8I	GTNNAC	3 cut(s)	400, 472, 869
HpyAV	CCTTC	3 cut(s)	156, 431, 560
HpyCH4IV	ACGT	2 cut(s)	599, 885
HpyCH4V	TGCA	2 cut(s)	107, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	6 cut(s)	195, 288, 539, 767, 816, 851
HpySE526I	ACGT	2 cut(s)	599, 885
Hsp92I	GRCGYC	1 cut(s)	293
Hsp92II	CATG	1 cut(s)	530
KpnI	GGTACC	1 cut(s)	809
Ksp22I	TGATCA	2 cut(s)	520, 649
Kzo9I	GATC	4 cut(s)	415, 520, 649, 859
LmnI	GCTCC	1 cut(s)	980
Lsp1109I	GCAGC	4 cut(s)	4, 91, 310, 569
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	2 cut(s)	599, 885
MaeIII	GTNAC	6 cut(s)	132, 440, 641, 668, 693, 724
MalI	GATC	4 cut(s)	417, 522, 651, 861
MboI	GATC	4 cut(s)	415, 520, 649, 859
MboII	GAAGA	4 cut(s)	147, 307, 616, 757
MfeI	CAATTG	1 cut(s)	1030
MhlI	GDGCHC	4 cut(s)	101, 411, 985, 1086
MluCI	AATT	9 cut(s)	59, 180, 335, 494, 932, 975, 1018, 1030, 1044
MlyI	GAGTC	3 cut(s)	524, 564, 567
MmeI	TCCRAC	1 cut(s)	573
MnlI	CCTC	5 cut(s)	346, 897, 925, 946, 1100
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	4 cut(s)	282, 840, 987, 1007
MspA1I	CMGCKG	2 cut(s)	104, 323
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	1030
Mva1269I	GAATGC	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeI	CATATG	2 cut(s)	92, 877
NdeII	GATC	4 cut(s)	415, 520, 649, 859
NlaIII	CATG	1 cut(s)	530
NlaIV	GGNNCC	5 cut(s)	144, 545, 807, 982, 1084
NmuCI	GTSAC	3 cut(s)	132, 440, 641
PctI	GAATGC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	368, 968
PflMI	CCANNNNNTGG	1 cut(s)	592
PkrI	GCNGC	4 cut(s)	19, 106, 325, 584
PleI	GAGTC	3 cut(s)	524, 564, 566
PpsI	GAGTC	3 cut(s)	524, 564, 566
Ppu21I	YACGTR	1 cut(s)	886
PspFI	CCCAGC	1 cut(s)	319
PspN4I	GGNNCC	5 cut(s)	144, 545, 807, 982, 1084
PspOMI	GGGCCC	1 cut(s)	1082
PspPI	GGNCC	4 cut(s)	67, 248, 1082, 1083
PvuII	CAGCTG	2 cut(s)	104, 323
RsaI	GTAC	3 cut(s)	56, 807, 884
RsaNI	GTAC	3 cut(s)	55, 806, 883
SaqAI	TTAA	4 cut(s)	282, 840, 987, 1007
SatI	GCNGC	4 cut(s)	18, 105, 324, 583
Sau3AI	GATC	4 cut(s)	415, 520, 649, 859
Sau96I	GGNCC	4 cut(s)	67, 248, 1082, 1083
SchI	GAGTC	3 cut(s)	524, 564, 567
SduI	GDGCHC	4 cut(s)	101, 411, 985, 1086
SfaNI	GCATC	1 cut(s)	598
SmlI	CTYRAG	2 cut(s)	281, 637
SmoI	CTYRAG	2 cut(s)	281, 637
SnaBI	TACGTA	1 cut(s)	886
Sse9I	AATT	9 cut(s)	59, 180, 335, 494, 932, 975, 1018, 1030, 1044
SsiI	CCGC	3 cut(s)	52, 809, 1086
SspI	AATATT	1 cut(s)	992
SspMI	CTAG	1 cut(s)	305
TaiI	ACGT	2 cut(s)	602, 888
TaqI	TCGA	2 cut(s)	418, 1070
TasI	AATT	9 cut(s)	59, 180, 335, 494, 932, 975, 1018, 1030, 1044
TfiI	GAWTC	2 cut(s)	368, 968
Tru1I	TTAA	4 cut(s)	282, 840, 987, 1007
Tru9I	TTAA	4 cut(s)	282, 840, 987, 1007
TscAI	CASTG	3 cut(s)	141, 824, 897
TseFI	GTSAC	3 cut(s)	132, 440, 641
TseI	GCWGC	4 cut(s)	17, 104, 323, 582
Tsp45I	GTSAC	3 cut(s)	132, 440, 641
TspDTI	ATGAA	2 cut(s)	764, 1056
TspGWI	ACGGA	1 cut(s)	961
TspRI	CASTG	3 cut(s)	141, 824, 897
Van91I	CCANNNNNTGG	1 cut(s)	592
Vha464I	CTTAAG	1 cut(s)	281
XapI	RAATTY	2 cut(s)	335, 494
XbaI	TCTAGA	1 cut(s)	304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.