Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002708

Physical Location & Seq

Genomic Coordinates Forward (+)

59462187 .. 59485834

Gene Structure 23648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG319500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2952 bp

ATGACTAGTGGTGGGATTCGAACAAGCGTGAAGGCCTACATTAATGAGCAGCGACTTGCTTCTTTGGCTGTGAATCATGAGAACAATGAGGGCATCAATACCCATTTGGATCCACTTGCAGAGGCCATAACAGCAGCTTCAAGTAATTCATATGGACTCTGTGATGGTAACATGCCTTGCTTGCCAATCTTGAGCTCTGCTACAAAGGCTTGTGAATCAAACCAACTGCCCTTCGCTGCGGGTACCGTTTTTGTGAATGGACAACCTCTTAGTCCTAAGGAGCTGTTTATACTACAAAAATGCCCAAACCCACCAAAGAAGCTAAGACCAGGAAACTATTGGTATGATAAAGATTGTGGACTTTGGGGAAAGGAAGGACAGAAACCTTCAGAGGTAATCTCTTCAATGCTTTGTGTTGGGGGTTGCATAAAGATGAATGCTAGCAATGGAAATACAGAAGTTTTCATAAATGGTCGGGAAATAACCAGAGTAGAGCTTCTGATGTTGCAGTTGGTGGGAGTTCAATGTGCTGCTGATACACACTTTTGGGTGTATGACGATGGGCGGTACGAATTGGCGGGCCAGAATAATATAAAAGGATCCATATGGGGCACAGCTGCAACAAAGCTTGTATGTGCTGTCTTGTCACTGCCAGTTCCTTCTAAATCTTCAAATCCTGTCATCCCTGATATAATTGAGCAGAGAACTCAGAACATTCTTTTAGTCGGAGATCATGAATCTGTAGCAAGTACTATATTTAAACAGGCCAGGATCCTATATAGAGCTATCCCTTTCTCAGTAGATGAACGTGAAAGTATCAAGTCTACGATACAGAGAAACATCTATGGTTATCTTGGTATACTCCTTGAGGTCCGTGAACATTTTGAAGAAGAATGTTTGGCTGAGATGAGTAGACAATGTTCTTCTAGTCGAACAGTTTCCAATGGGAACAATGCCAAAACCCCTTACTCCATTGGCCCAAAGCTGAAAGCATTCTCTGATTGGCTTCTTAAGACTAAGGCGTCAGGCTATCTGGAAGCCATCTTCCCAGCTGCTACCTTTGAATTTGCACCATTTGTGGAGGAGTTATGGAATGATTCAGCCATTCAGGCCACATACAAGCGGTCAAGTGAACTGGGAATACTACCTAGAGCTGCTACTTATTTCATAAAGAGGGCTGTTCACATATTAAGAGTAAACTATGAGCCCACAGATCGAGACATCCTATATGCTGAAGGTGACACTTCAGCTAATGGGTTGGCTTGCGTGGACTTCTCATTTCCCCAGTCAGAATTTGGATATGAGAATAATACTACTGATCAGCATGACTCATTGCTTAGGTACCAACTTATTAGAGTCAGTGAAGGACTCGGAGAAAGCTGCCAATGGTTGGAGACGTTTGGGGATGCTGGACTGGTCATCTTCTGTCTGTCCTTGAGTGACTATGATCAGTTCTCTGCTGATGGTAACAGCTCTATCACTAACAAGATGTTACAGAGCAGAGCTGTATTTGGAAGCATTGTTACTCATCCAAGCTTTGAGAAGATGAACTGCCTTTTGCTTCTAAGCAAGTTTGATTTGTTTGTGAAAAAGATAGCACGGGTACCGCTAACTCAGTGCGACTGGTTTGATGATTTTAAGCCATTGCTTAGCTATGATCTGGGTCAACCAGCATATGAGTACGTAGCAGTGAAGTTCAAGAGGCTCTACTCCTCTCTAACCAACAAGAAATTGTATGTTTCTCTGGTGGAGGATTTTGAGCCTGATTCCGGCCCGCCCCCTCAATCAGTTTCAGATAGATTTCAAACTGTAGGGCTTGTAACTTTGTATCCCATATTGATTGAAGAACTGGAGCTTCAGGACTCGGTAGTGATCGATCAGAAGAAGCAGTTACTTACCATTGTTCCTTCATCTCCTCAGTCAGAGGTTGAGATCCCTCAGACAGAGGTCGTGACCTTGCAGTCCTTCCATTTGAGGAGCTTCCACTTTAATGAGCTGAAAACAGCCACCACAAACTTCTGTCGACCTGATAGTATTATGGCTCAAGGTGGTCTTGGTTCTGTCTATAAGGGGTGGATTTATGAGCATTCGTTCACAGCTGGCGAGCCTGGTACCAGCATTGCCGTTGTAATAAAGAGGTTTAGCCAACAAAGGACCCTGCAGAGTCAGAAGGACTGGTTGACAGAAGTTAGCTTCCTTGGACACTTGGGTCACCCAAATCTGGTAAAACTGATTGGTTACTGCCTAAAGGATGACATGCGGCTTCGGGTGCATGAATTTATCTCTCAAGGAAGCCTGAACATTCATCTATATGAAAGGGCTTCTCTCTATAAACGACTTTCATGGAACCAGCGTATGAAGATTGCCCTTGGTGCTGCCAAGGGTCTAGCATTTCTTCATAGTAATGAGGCAAAAGTGATATATGGGGACTTTGAAACTTCCAATATCCTTCTTGATTCAGACTATAATGCGAAACTCTATGGTTATGGTTCGGCCATGGAAAGGCTTCAAGGTTATAGGAGCCATGTCTCAGAAGCGGACATGGCTATGTATGAGGAAAAGGTCTTTTTTGCAGCTGCTGCTCGCAGTGTGTATGCAGCTCCTGAGACTTCTAATGATCACTTAACCCCGAAAAGTGATGTATACAGTTATGGGGTCGTTCTGCTCGAAATGTTATCCGGCAGACGAGCTTTCGACAATAGCAGGTCCCTTAGAGAAGAAACTTTACTTCAATTTGCGAAAAACATTTCTTCGCAAGGTGGTTCTGCCAAGCATGGCAGCAAACGCGACGTTGCACACTTTTTTGATGCTCATATTGATGGGCAGTACTCTCAGGACAGGGGTCTCAAAGCACTTAACCTTGCAATTCAGTGCATCTCAAAGGAACCGGAGTCCAGGCCAAACATGAATGAGGTGGTAGAAATATTGGAGCAGATTCAGTCATCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0004857 GO:0005095 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009898 GO:0009987 GO:0016020 GO:0016247 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0030234 GO:0030695 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034260 GO:0035639 GO:0036094 GO:0043086 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0048519 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051346 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098772 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

983

Amino Acids

109.7

Weight (kDa)

5.86

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-alpha	PF00503	235 - 584	1.2e-56	G-protein alpha subunit
PK_Tyr_Ser-Thr	PF07714	680 - 976	8.8e-30	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	703 - 974	1.3e-27	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23460
fragaria_vesca	FvH4_1g14590 FvH4_1g14590
malus_domestica	MD00G1067300.v1.1 MD02G1159500.v1.1
prunus_persica	Prupe.7G144400_v2.0.a1
pyrus_communis	pycom02g12580 pycom15g23720
rosa_chinensis	RchiOBHm_Chr1g0367271 RchiOBHm_Chr1g0367281 RchiOBHm_Chr1g0367331 RchiOBHm_Chr2g0103371
rosa_laevigata	RLG00000017231 RLG00000027279 RLG00000027284
rosa_multiflora	Rmu_sc0001555.1_g000003 Rmu_sc0002434.1_g000010 Rmu_sc0011000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00139680 Rroxscaffold_4G00289390 Rroxscaffold_4G00289470 Rroxscaffold_4G00289480
rosa_rugosa	Rorug02G0114700 Rorug06G0002300
rosa_samantha	Rh1AG342600 Rh1BG303200 Rh1BG303600 Rh1BG303700 Rh1CG319500 Rh1CG319700 Rh1DG335600 Rh1DG336000 Rh1DG336100 Rh2AG162700 Rh2BG169800 Rh2CG169900 Rh2DG168800
rosa_wichuraiana	Rw1G030440 Rw2G012780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	1021, 1960, 2208
Acc36I	ACCTGC	1 cut(s)	2694
Acc65I	GGTACC	4 cut(s)	242, 1341, 1603, 2111
AccB1I	GGYRCC	4 cut(s)	242, 1341, 1603, 2111
AccB7I	CCANNNNNTGG	1 cut(s)	1390
AccI	GTMKAC	5 cut(s)	824, 859, 913, 2023, 2643
AccII	CGCG	1 cut(s)	2787
AciI	CCGC	8 cut(s)	239, 565, 578, 1123, 1607, 1775, 2260, 2537
AclWI	GGATC	7 cut(s)	104, 117, 594, 607, 766, 779, 1927
AcoI	YGGCCR	1 cut(s)	2493
AcsI	RAATTY	3 cut(s)	1064, 1292, 2276
AcuI	CTGAAG	4 cut(s)	372, 1230, 1254, 1841
AcyI	GRCGYC	1 cut(s)	1022
AfaI	GTAC	8 cut(s)	244, 569, 751, 1343, 1605, 1682, 2113, 2828
AfiI	CCNNNNNNNGG	4 cut(s)	1390, 1769, 2221, 2502
AflII	CTTAAG	1 cut(s)	1010
AhlI	ACTAGT	1 cut(s)	5
AjnI	CCWGG	4 cut(s)	328, 767, 2107, 2894
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	5 cut(s)	1212, 1388, 2533, 2600, 2849
AlwI	GGATC	7 cut(s)	104, 117, 594, 607, 766, 779, 1927
AlwNI	CAGNNNCTG	2 cut(s)	2579, 2603
AoxI	GGCC	9 cut(s)	33, 123, 580, 765, 976, 1110, 1771, 2493, 2897
ApoI	RAATTY	3 cut(s)	1064, 1292, 2276
AseI	ATTAAT	1 cut(s)	42
Asp700I	GAANNNNTTC	3 cut(s)	937, 992, 2505
Asp718I	GGTACC	4 cut(s)	242, 1341, 1603, 2111
AspS9I	GGNCC	6 cut(s)	580, 871, 977, 1772, 2154, 2706
AsuHPI	GGTGA	2 cut(s)	1250, 2204
AsuII	TTCGAA	1 cut(s)	19
AsuNHI	GCTAGC	1 cut(s)	440
AvaII	GGWCC	3 cut(s)	871, 2154, 2706
AxyI	CCTNAGG	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	614
BamHI	GGATCC	3 cut(s)	109, 599, 771
BanI	GGYRCC	4 cut(s)	242, 1341, 1603, 2111
BanII	GRGCYC	2 cut(s)	197, 1209
BarI	GAAGNNNNNNTAC	4 cut(s)	1507, 1539, 2709, 2741
Bbv12I	GWGCWC	1 cut(s)	197
BccI	CCATC	5 cut(s)	158, 554, 1049, 1457, 2813
BceAI	ACGGC	1 cut(s)	2108
BciT130I	CCWGG	4 cut(s)	330, 769, 2109, 2896
BciVI	GTATCC	1 cut(s)	1839
BclI	TGATCA	3 cut(s)	1318, 1447, 2617
BcoDI	GTCTC	5 cut(s)	1212, 1388, 2533, 2600, 2849
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	5 cut(s)	6, 441, 927, 1149, 2387
BfmI	CTRYAG	3 cut(s)	741, 1809, 2159
BfrI	CTTAAG	1 cut(s)	1010
BfuAI	ACCTGC	1 cut(s)	2694
BfuI	GTATCC	1 cut(s)	1839
BglI	GCCNNNNNGGC	1 cut(s)	1109
BlpI	GCTNAGC	1 cut(s)	1649
BmcAI	AGTACT	2 cut(s)	751, 2828
Bme1390I	CCNGG	4 cut(s)	330, 769, 2109, 2896
Bme18I	GGWCC	3 cut(s)	871, 2154, 2706
BmgT120I	GGNCC	6 cut(s)	580, 871, 977, 1772, 2154, 2706
BmrFI	CCNGG	4 cut(s)	330, 769, 2109, 2896
BmrI	ACTGGG	2 cut(s)	1145, 1279
BmsI	GCATC	4 cut(s)	102, 1396, 2797, 2883
BmtI	GCTAGC	1 cut(s)	444
BmuI	ACTGGG	2 cut(s)	1145, 1279
BoxI	GACNNNNGTC	2 cut(s)	1946, 2841
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
BpmI	CTGGAG	1 cut(s)	1871
Bpu10I	CCTNAGC	1 cut(s)	1337
Bpu1102I	GCTNAGC	1 cut(s)	1649
Bpu14I	TTCGAA	1 cut(s)	19
BpuEI	CTTGAG	5 cut(s)	211, 887, 1456, 2028, 2271
Bsa29I	ATCGAT	1 cut(s)	1875
BsaAI	YACGTR	1 cut(s)	1684
BsaHI	GRCGYC	1 cut(s)	1022
BsaI	GGTCTC	1 cut(s)	2849
BsaJI	CCNNGG	4 cut(s)	2197, 2368, 2379, 2496
BsaWI	WCCGGW	1 cut(s)	2887
Bsc4I	CCNNNNNNNGG	4 cut(s)	1390, 1769, 2221, 2502
Bse1I	ACTGG	7 cut(s)	653, 1140, 1285, 1419, 1628, 1854, 2180
Bse21I	CCTNAGG	1 cut(s)	276
Bse3DI	GCAATG	4 cut(s)	451, 1331, 1643, 2118
BseBI	CCWGG	4 cut(s)	330, 769, 2109, 2896
BseCI	ATCGAT	1 cut(s)	1875
BseDI	CCNNGG	4 cut(s)	2197, 2368, 2379, 2496
BseGI	GGATG	5 cut(s)	681, 1221, 1411, 1528, 2257
BseLI	CCNNNNNNNGG	4 cut(s)	1390, 1769, 2221, 2502
BseMI	GCAATG	4 cut(s)	451, 1331, 1643, 2118
BseMII	CTCAG	9 cut(s)	722, 810, 894, 1628, 1931, 1952, 2544, 2595, 2846
BseNI	ACTGG	7 cut(s)	653, 1140, 1285, 1419, 1628, 1854, 2180
BseRI	GAGGAG	4 cut(s)	1097, 1702, 1905, 1990
BseSI	GKGCMC	1 cut(s)	614
BseYI	CCCAGC	1 cut(s)	1048
Bsh1236I	CGCG	1 cut(s)	2787
BshFI	GGCC	9 cut(s)	35, 125, 582, 767, 978, 1112, 1773, 2495, 2899
BshNI	GGYRCC	4 cut(s)	242, 1341, 1603, 2111
BshVI	ATCGAT	1 cut(s)	1875
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	3 cut(s)	1770, 2679, 2888
BslFI	GGGAC	2 cut(s)	2441, 2692
BslI	CCNNNNNNNGG	4 cut(s)	1390, 1769, 2221, 2502
BsmAI	GTCTC	5 cut(s)	1212, 1388, 2533, 2600, 2849
BsmBI	CGTCTC	1 cut(s)	1388
BsmFI	GGGAC	2 cut(s)	2441, 2692
BsmI	GAATGC	3 cut(s)	442, 992, 2086
BsnI	GGCC	9 cut(s)	35, 125, 582, 767, 978, 1112, 1773, 2495, 2899
Bso31I	GGTCTC	1 cut(s)	2849
Bsp119I	TTCGAA	1 cut(s)	19
Bsp1286I	GDGCHC	3 cut(s)	197, 614, 1209
Bsp1720I	GCTNAGC	1 cut(s)	1649
Bsp19I	CCATGG	1 cut(s)	2496
BspACI	CCGC	8 cut(s)	239, 565, 578, 1123, 1607, 1775, 2260, 2537
BspANI	GGCC	9 cut(s)	35, 125, 582, 767, 978, 1112, 1773, 2495, 2899
BspCNI	CTCAG	9 cut(s)	721, 809, 895, 1627, 1930, 1951, 2543, 2596, 2845
BspDI	ATCGAT	1 cut(s)	1875
BspFNI	CGCG	1 cut(s)	2787
BspHI	TCATGA	2 cut(s)	76, 733
BspMAI	CTGCAG	1 cut(s)	2163
BspMI	ACCTGC	1 cut(s)	2694
BspOI	GCTAGC	1 cut(s)	444
BspPI	GGATC	7 cut(s)	104, 117, 594, 607, 766, 779, 1927
BspT104I	TTCGAA	1 cut(s)	19
BspT107I	GGYRCC	4 cut(s)	242, 1341, 1603, 2111
BspTI	CTTAAG	1 cut(s)	1010
BspTNI	GGTCTC	1 cut(s)	2849
BsrDI	GCAATG	4 cut(s)	451, 1331, 1643, 2118
BsrI	ACTGG	7 cut(s)	653, 1140, 1285, 1419, 1628, 1854, 2180
BssECI	CCNNGG	4 cut(s)	2197, 2368, 2379, 2496
BssNAI	GTATAC	2 cut(s)	860, 2644
BssNI	GRCGYC	1 cut(s)	1022
BssT1I	CCWWGG	4 cut(s)	2197, 2368, 2379, 2496
Bst1107I	GTATAC	2 cut(s)	860, 2644
Bst2UI	CCWGG	4 cut(s)	330, 769, 2109, 2896
Bst4CI	ACNGT	4 cut(s)	247, 937, 1810, 2648
Bst6I	CTCTTC	1 cut(s)	406
BstACI	GRCGYC	1 cut(s)	1022
BstAFI	CTTAAG	1 cut(s)	1010
BstAPI	GCANNNNNTGC	1 cut(s)	2579
BstBAI	YACGTR	1 cut(s)	1684
BstBI	TTCGAA	1 cut(s)	19
BstC8I	GCNNGC	8 cut(s)	182, 442, 580, 1264, 1775, 2101, 2105, 2584
BstDSI	CCRYGG	1 cut(s)	2496
BstEII	GGTNACC	1 cut(s)	2210
BstF5I	GGATG	5 cut(s)	681, 1221, 1411, 1528, 2257
BstFNI	CGCG	1 cut(s)	2787
BstMAI	GTCTC	5 cut(s)	1212, 1388, 2533, 2600, 2849
BstNI	CCWGG	4 cut(s)	330, 769, 2109, 2896
BstNSI	RCATGY	2 cut(s)	175, 2260
BstPAI	GACNNNNGTC	2 cut(s)	1946, 2841
BstPI	GGTNACC	1 cut(s)	2210
BstSCI	CCNGG	4 cut(s)	328, 767, 2107, 2894
BstSFI	CTRYAG	3 cut(s)	741, 1809, 2159
BstSLI	GKGCMC	1 cut(s)	614
BstSNI	TACGTA	1 cut(s)	1684
BstUI	CGCG	1 cut(s)	2787
BstX2I	RGATCY	4 cut(s)	109, 599, 771, 1932
BstYI	RGATCY	4 cut(s)	109, 599, 771, 1932
BstZ17I	GTATAC	2 cut(s)	860, 2644
Bsu15I	ATCGAT	1 cut(s)	1875
Bsu36I	CCTNAGG	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	1839
BsuRI	GGCC	9 cut(s)	35, 125, 582, 767, 978, 1112, 1773, 2495, 2899
BsuTUI	ATCGAT	1 cut(s)	1875
BtgI	CCRYGG	1 cut(s)	2496
BtsCI	GGATG	5 cut(s)	681, 1221, 1411, 1528, 2257
BtsI	GCAGTG	3 cut(s)	647, 1695, 2593
BtsIMutI	CAGTG	6 cut(s)	647, 1366, 1622, 1695, 2593, 2876
BveI	ACCTGC	1 cut(s)	2694
Cac8I	GCNNGC	8 cut(s)	182, 442, 580, 1264, 1775, 2101, 2105, 2584
CaiI	CAGNNNCTG	2 cut(s)	2579, 2603
CciI	TCATGA	2 cut(s)	76, 733
Cfr13I	GGNCC	6 cut(s)	580, 871, 977, 1772, 2154, 2706
ClaI	ATCGAT	1 cut(s)	1875
CseI	GACGC	1 cut(s)	1011
Csp6I	GTAC	8 cut(s)	243, 568, 750, 1342, 1604, 1681, 2112, 2827
CviQI	GTAC	8 cut(s)	243, 568, 750, 1342, 1604, 1681, 2112, 2827
DraI	TTTAAA	1 cut(s)	760
DrdI	GACNNNNNNGTC	3 cut(s)	1021, 1960, 2208
DseDI	GACNNNNNNGTC	3 cut(s)	1021, 1960, 2208
EaeI	YGGCCR	1 cut(s)	2493
Eam1104I	CTCTTC	1 cut(s)	406
EarI	CTCTTC	1 cut(s)	406
Ecl136II	GAGCTC	1 cut(s)	195
Eco105I	TACGTA	1 cut(s)	1684
Eco130I	CCWWGG	4 cut(s)	2197, 2368, 2379, 2496
Eco147I	AGGCCT	1 cut(s)	35
Eco24I	GRGCYC	2 cut(s)	197, 1209
Eco31I	GGTCTC	1 cut(s)	2849
Eco47I	GGWCC	3 cut(s)	871, 2154, 2706
Eco53kI	GAGCTC	1 cut(s)	195
Eco57I	CTGAAG	4 cut(s)	372, 1230, 1254, 1841
Eco81I	CCTNAGG	1 cut(s)	276
Eco91I	GGTNACC	1 cut(s)	2210
EcoICRI	GAGCTC	1 cut(s)	195
EcoO109I	RGGNCCY	2 cut(s)	2154, 2706
EcoO65I	GGTNACC	1 cut(s)	2210
EcoRII	CCWGG	4 cut(s)	328, 767, 2107, 2894
EcoT14I	CCWWGG	4 cut(s)	2197, 2368, 2379, 2496
EcoT38I	GRGCYC	2 cut(s)	197, 1209
ErhI	CCWWGG	4 cut(s)	2197, 2368, 2379, 2496
Esp3I	CGTCTC	1 cut(s)	1388
FalI	AAGNNNNNCTT	2 cut(s)	2037, 2069
FaqI	GGGAC	2 cut(s)	2441, 2692
FauI	CCCGC	3 cut(s)	232, 571, 1782
FauNDI	CATATG	3 cut(s)	151, 605, 1675
FbaI	TGATCA	3 cut(s)	1318, 1447, 2617
FblI	GTMKAC	5 cut(s)	824, 859, 913, 2023, 2643
FokI	GGATG	5 cut(s)	668, 1208, 1418, 1515, 2264
FriOI	GRGCYC	2 cut(s)	197, 1209
FspBI	CTAG	5 cut(s)	6, 441, 927, 1149, 2387
GsaI	CCCAGC	1 cut(s)	1052
GsuI	CTGGAG	1 cut(s)	1871
HaeIII	GGCC	9 cut(s)	35, 125, 582, 767, 978, 1112, 1773, 2495, 2899
HapII	CCGG	3 cut(s)	1770, 2679, 2888
HgaI	GACGC	1 cut(s)	1011
Hin1I	GRCGYC	1 cut(s)	1022
HincII	GTYRAC	3 cut(s)	1667, 2024, 2181
HindII	GTYRAC	3 cut(s)	1667, 2024, 2181
HindIII	AAGCTT	2 cut(s)	626, 1534
HpaII	CCGG	3 cut(s)	1770, 2679, 2888
HphI	GGTGA	2 cut(s)	1250, 2204
Hpy99I	CGWCG	1 cut(s)	2792
HpyCH4III	ACNGT	4 cut(s)	247, 937, 1810, 2648
HpyCH4IV	ACGT	4 cut(s)	808, 1397, 1683, 2790
HpySE526I	ACGT	4 cut(s)	808, 1397, 1683, 2790
Hsp92I	GRCGYC	1 cut(s)	1022
KpnI	GGTACC	4 cut(s)	246, 1345, 1607, 2115
Ksp22I	TGATCA	3 cut(s)	1318, 1447, 2617
LmnI	GCTCC	6 cut(s)	280, 1852, 1977, 2520, 2605, 2929
LweI	GCATC	4 cut(s)	102, 1396, 2797, 2883
MaeI	CTAG	5 cut(s)	6, 441, 927, 1149, 2387
MaeII	ACGT	4 cut(s)	808, 1397, 1683, 2790
MflI	RGATCY	4 cut(s)	109, 599, 771, 1932
MhlI	GDGCHC	3 cut(s)	197, 614, 1209
MluCI	AATT	9 cut(s)	145, 572, 693, 1064, 1292, 1730, 2276, 2732, 2865
MlyI	GAGTC	7 cut(s)	150, 1322, 1362, 1365, 1856, 2173, 2900
MmeI	TCCRAC	2 cut(s)	706, 1371
MroXI	GAANNNNTTC	3 cut(s)	937, 992, 2505
MseI	TTAA	8 cut(s)	42, 759, 1011, 1190, 1638, 1989, 2624, 2856
MslI	CAYNNNNRTG	7 cut(s)	431, 1989, 2310, 2403, 2546, 2817, 2947
MspA1I	CMGCKG	4 cut(s)	617, 1052, 2099, 2576
MspCI	CTTAAG	1 cut(s)	1010
MspI	CCGG	3 cut(s)	1770, 2679, 2888
MspR9I	CCNGG	4 cut(s)	330, 769, 2109, 2896
Mva1269I	GAATGC	3 cut(s)	442, 992, 2086
MvaI	CCWGG	4 cut(s)	330, 769, 2109, 2896
MvnI	CGCG	1 cut(s)	2787
NcoI	CCATGG	1 cut(s)	2496
NdeI	CATATG	3 cut(s)	151, 605, 1675
NheI	GCTAGC	1 cut(s)	440
NmuCI	GTSAC	5 cut(s)	645, 1238, 1439, 1951, 2210
NspI	RCATGY	2 cut(s)	175, 2260
NspV	TTCGAA	1 cut(s)	19
PagI	TCATGA	2 cut(s)	76, 733
PceI	AGGCCT	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	2664
PctI	GAATGC	3 cut(s)	442, 992, 2086
PdmI	GAANNNNTTC	3 cut(s)	937, 992, 2505
PfeI	GAWTC	8 cut(s)	16, 73, 215, 737, 1097, 1766, 2456, 2935
PflMI	CCANNNNNTGG	1 cut(s)	1390
PleI	GAGTC	7 cut(s)	150, 1322, 1362, 1364, 1856, 2172, 2899
PpsI	GAGTC	7 cut(s)	150, 1322, 1362, 1364, 1856, 2172, 2899
Ppu21I	YACGTR	1 cut(s)	1684
PpuMI	RGGWCCY	2 cut(s)	2154, 2706
PshAI	GACNNNNGTC	2 cut(s)	1946, 2841
PshBI	ATTAAT	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	197
Psp5II	RGGWCCY	2 cut(s)	2154, 2706
Psp6I	CCWGG	4 cut(s)	328, 767, 2107, 2894
PspEI	GGTNACC	1 cut(s)	2210
PspFI	CCCAGC	1 cut(s)	1048
PspGI	CCWGG	4 cut(s)	328, 767, 2107, 2894
PspPI	GGNCC	6 cut(s)	580, 871, 977, 1772, 2154, 2706
PspPPI	RGGWCCY	2 cut(s)	2154, 2706
PsrI	GAACNNNNNNTAC	4 cut(s)	904, 936, 1125, 1157
PstI	CTGCAG	1 cut(s)	2163
PstNI	CAGNNNCTG	2 cut(s)	2579, 2603
PsuI	RGATCY	4 cut(s)	109, 599, 771, 1932
PvuII	CAGCTG	4 cut(s)	617, 1052, 2099, 2576
RsaI	GTAC	8 cut(s)	244, 569, 751, 1343, 1605, 1682, 2113, 2828
RsaNI	GTAC	8 cut(s)	243, 568, 750, 1342, 1604, 1681, 2112, 2827
RseI	CAYNNNNRTG	7 cut(s)	431, 1989, 2310, 2403, 2546, 2817, 2947
SacI	GAGCTC	1 cut(s)	197
SalI	GTCGAC	1 cut(s)	2022
SaqAI	TTAA	8 cut(s)	42, 759, 1011, 1190, 1638, 1989, 2624, 2856
Sau96I	GGNCC	6 cut(s)	580, 871, 977, 1772, 2154, 2706
ScaI	AGTACT	2 cut(s)	751, 2828
SchI	GAGTC	7 cut(s)	150, 1322, 1362, 1365, 1856, 2173, 2900
ScrFI	CCNGG	4 cut(s)	330, 769, 2109, 2896
SduI	GDGCHC	3 cut(s)	197, 614, 1209
SfaNI	GCATC	4 cut(s)	102, 1396, 2797, 2883
SfcI	CTRYAG	3 cut(s)	741, 1809, 2159
SfuI	TTCGAA	1 cut(s)	19
SinI	GGWCC	3 cut(s)	871, 2154, 2706
SmiMI	CAYNNNNRTG	7 cut(s)	431, 1989, 2310, 2403, 2546, 2817, 2947
SmlI	CTYRAG	6 cut(s)	190, 866, 1010, 1435, 2043, 2286
SmoI	CTYRAG	6 cut(s)	190, 866, 1010, 1435, 2043, 2286
SnaBI	TACGTA	1 cut(s)	1684
SpeI	ACTAGT	1 cut(s)	5
Sse9I	AATT	9 cut(s)	145, 572, 693, 1064, 1292, 1730, 2276, 2732, 2865
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	8 cut(s)	239, 565, 578, 1123, 1607, 1775, 2260, 2537
SspI	AATATT	1 cut(s)	2925
SspMI	CTAG	5 cut(s)	6, 441, 927, 1149, 2387
SstI	GAGCTC	1 cut(s)	197
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	4 cut(s)	328, 767, 2107, 2894
StyI	CCWWGG	4 cut(s)	2197, 2368, 2379, 2496
TaaI	ACNGT	4 cut(s)	247, 937, 1810, 2648
TaiI	ACGT	4 cut(s)	811, 1400, 1686, 2793
TaqI	TCGA	7 cut(s)	19, 931, 1216, 1875, 2023, 2667, 2694
TasI	AATT	9 cut(s)	145, 572, 693, 1064, 1292, 1730, 2276, 2732, 2865
TatI	WGTACW	2 cut(s)	749, 2826
TauI	GCSGC	1 cut(s)	2263
TfiI	GAWTC	8 cut(s)	16, 73, 215, 737, 1097, 1766, 2456, 2935
Tru1I	TTAA	8 cut(s)	42, 759, 1011, 1190, 1638, 1989, 2624, 2856
Tru9I	TTAA	8 cut(s)	42, 759, 1011, 1190, 1638, 1989, 2624, 2856
TscAI	CASTG	6 cut(s)	654, 1366, 1622, 1695, 2593, 2876
TseFI	GTSAC	5 cut(s)	645, 1238, 1439, 1951, 2210
Tsp45I	GTSAC	5 cut(s)	645, 1238, 1439, 1951, 2210
TspGWI	ACGGA	1 cut(s)	863
TspRI	CASTG	6 cut(s)	654, 1366, 1622, 1695, 2593, 2876
Van91I	CCANNNNNTGG	1 cut(s)	1390
Vha464I	CTTAAG	1 cut(s)	1010
VpaK11BI	GGWCC	3 cut(s)	871, 2154, 2706
VspI	ATTAAT	1 cut(s)	42
XapI	RAATTY	3 cut(s)	1064, 1292, 2276
XceI	RCATGY	2 cut(s)	175, 2260
XcmI	CCANNNNNNNNNTGG	2 cut(s)	336, 1292
XmiI	GTMKAC	5 cut(s)	824, 859, 913, 2023, 2643
XmnI	GAANNNNTTC	3 cut(s)	937, 992, 2505
XspI	CTAG	5 cut(s)	6, 441, 927, 1149, 2387
ZrmI	AGTACT	2 cut(s)	751, 2828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.