Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002708

Physical Location & Seq

Genomic Coordinates Forward (+)

57633422 .. 57634488

Gene Structure 1067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59180

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGACAACCTCTTACTCCTGAAGAGCTTCGCACGTTACAAAGCTGTACGTCCAAACCCTCCAAAGAAGCTAAAACCAGGAAACTACTGGTATGACAAGATTTGTGGACTTTGGGGGAAGGCTGGAACAAAGCTTGTCTGTGCTGTCTTGTCACTGCCAGTACCTTCTAGATCTTCAAATCCTATCATTCTTGAACTCATTGAGCAGAGAAGTGAGAGAACACTTCAGAAGATTCTTTTAGTTGGATGTAACGGATCTGGAGCAAGTACTATATTTAAACAGACTTCAAATCTCGCTTTATCTATGATTGTTCTTTGCTTCTTGAATCTTAAAGTTCTGGTGAAGTGTTGGCCAAACAATTCTAGCTTGAGGCTTCTGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0004857 GO:0005095 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009898 GO:0009987 GO:0016020 GO:0016247 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0030234 GO:0030695 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034260 GO:0035639 GO:0036094 GO:0043086 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0048519 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051346 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098772 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

127

Amino Acids

14.13

Weight (kDa)

9.99

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23460
fragaria_vesca	FvH4_1g14590 FvH4_1g14590
malus_domestica	MD00G1067300.v1.1 MD02G1159500.v1.1
prunus_persica	Prupe.7G144400_v2.0.a1
pyrus_communis	pycom02g12580 pycom15g23720
rosa_chinensis	RchiOBHm_Chr1g0367271 RchiOBHm_Chr1g0367281 RchiOBHm_Chr1g0367331 RchiOBHm_Chr2g0103371
rosa_laevigata	RLG00000017231 RLG00000027279 RLG00000027284
rosa_multiflora	Rmu_sc0001555.1_g000003 Rmu_sc0002434.1_g000010 Rmu_sc0011000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00139680 Rroxscaffold_4G00289390 Rroxscaffold_4G00289470 Rroxscaffold_4G00289480
rosa_rugosa	Rorug02G0114700 Rorug06G0002300
rosa_samantha	Rh1AG342600 Rh1BG303200 Rh1BG303600 Rh1BG303700 Rh1CG319500 Rh1CG319700 Rh1DG335600 Rh1DG336000 Rh1DG336100 Rh2AG162700 Rh2BG169800 Rh2CG169900 Rh2DG168800
rosa_wichuraiana	Rw1G030440 Rw2G012780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	350
AcuI	CTGAAG	2 cut(s)	41, 209
AfaI	GTAC	3 cut(s)	48, 162, 268
AgsI	TTSAA	4 cut(s)	177, 194, 288, 325
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	5 cut(s)	27, 44, 70, 133, 366
AluI	AGCT	5 cut(s)	27, 44, 70, 133, 366
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	78
BfaI	CTAG	2 cut(s)	168, 363
BglII	AGATCT	1 cut(s)	170
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	279
Bse1I	ACTGG	2 cut(s)	92, 158
BseBI	CCWGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	251
BseNI	ACTGG	2 cut(s)	92, 158
BshFI	GGCC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	170, 254
BspANI	GGCC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	262
BspQI	GCTCTTC	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	92, 158
BssMI	GATC	2 cut(s)	170, 254
Bst2UI	CCWGG	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	251
BstKTI	GATC	2 cut(s)	173, 257
BstMBI	GATC	2 cut(s)	170, 254
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstX2I	RGATCY	2 cut(s)	170, 254
BstYI	RGATCY	2 cut(s)	170, 254
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	47, 161, 267
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviJI	RGCY	8 cut(s)	27, 44, 70, 122, 133, 352, 366, 373
CviKI_1	RGCY	8 cut(s)	27, 44, 70, 122, 133, 352, 366, 373
CviQI	GTAC	3 cut(s)	47, 161, 267
DpnI	GATC	2 cut(s)	172, 256
DpnII	GATC	2 cut(s)	170, 254
DraI	TTTAAA	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	350
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco57I	CTGAAG	2 cut(s)	41, 209
EcoRII	CCWGG	1 cut(s)	76
FaiI	YATR	3 cut(s)	93, 272, 305
FokI	GGATG	1 cut(s)	258
FspBI	CTAG	2 cut(s)	168, 363
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	232, 325
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	5 cut(s)	19, 168, 191, 258, 322
Hpy8I	GTNNAC	1 cut(s)	107
HpyAV	CCTTC	2 cut(s)	112, 174
HpyCH4IV	ACGT	2 cut(s)	34, 49
HpySE526I	ACGT	2 cut(s)	34, 49
Kzo9I	GATC	2 cut(s)	170, 254
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	8 cut(s)	32, 63, 73, 90, 108, 171, 243, 323
MaeI	CTAG	2 cut(s)	168, 363
MaeII	ACGT	2 cut(s)	34, 49
MaeIII	GTNAC	3 cut(s)	35, 150, 248
MalI	GATC	2 cut(s)	172, 256
MboI	GATC	2 cut(s)	170, 254
MboII	GAAGA	3 cut(s)	34, 165, 241
MflI	RGATCY	2 cut(s)	170, 254
MlsI	TGGCCA	1 cut(s)	352
MluCI	AATT	1 cut(s)	358
MluNI	TGGCCA	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	3 cut(s)	20, 69, 363
Mox20I	TGGCCA	1 cut(s)	352
MroXI	GAANNNNTTC	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	352
MseI	TTAA	3 cut(s)	276, 330, 382
Msp20I	TGGCCA	1 cut(s)	352
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	170, 254
NmuCI	GTSAC	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	232, 325
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PsuI	RGATCY	2 cut(s)	170, 254
RsaI	GTAC	3 cut(s)	48, 162, 268
RsaNI	GTAC	3 cut(s)	47, 161, 267
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	276, 330, 382
Sau3AI	GATC	2 cut(s)	170, 254
ScaI	AGTACT	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	9 cut(s)	12, 29, 37, 46, 52, 72, 135, 166, 368
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	1 cut(s)	358
SspMI	CTAG	2 cut(s)	168, 363
StyD4I	CCNGG	1 cut(s)	76
TaiI	ACGT	2 cut(s)	37, 52
TasI	AATT	1 cut(s)	358
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	232, 325
Tru1I	TTAA	3 cut(s)	276, 330, 382
Tru9I	TTAA	3 cut(s)	276, 330, 382
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	150
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	159
XbaI	TCTAGA	1 cut(s)	167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	2 cut(s)	168, 363
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.