Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002708

Physical Location & Seq

Genomic Coordinates Forward (+)

44006140 .. 44006795

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG303600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGACTAGTGGTGGGATTCGAACAAGCGTGAAGGCCTACATTAATGAGCAGCGACTCGCTTCTTTGGCTGTGAATCATGAGAACAATGAGGGCATCAATACCCATTTGGCTCCACTTGCAGAGGCTACCATGGCAGCAGCTTCAAGTAATTCATATGGGCTCTGTGATGGTAACATGCCTTGCTTGCCAATCTTGGGCTCTGCTACAAAGTCTTGTGAAGCAAATCAGCTGCCACCAGCAGCGGATACTATTAGTGTGAATGGACAACCTCTTACTCCTGAGGAGCTTCGTACGTTACAAAGCTGCCCAAACCCTCCAAAGAAGCTAAAACCAGGAAACTATTGGTATGATAAGATTTGTGGATTTTGGGGGAAGGAAGGACAGAAGCCTTCAGAGGTAATCTCTCCCCAGCTTTGTGTTGGGGGTTGCTGGTTGCATGAAGGAAAATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0004857 GO:0005095 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009898 GO:0009987 GO:0016020 GO:0016247 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0030234 GO:0030695 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034260 GO:0035639 GO:0036094 GO:0043086 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0048519 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051346 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098772 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

150

Amino Acids

16.0

Weight (kDa)

6.28

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23460
fragaria_vesca	FvH4_1g14590 FvH4_1g14590
malus_domestica	MD00G1067300.v1.1 MD02G1159500.v1.1
prunus_persica	Prupe.7G144400_v2.0.a1
pyrus_communis	pycom02g12580 pycom15g23720
rosa_chinensis	RchiOBHm_Chr1g0367271 RchiOBHm_Chr1g0367281 RchiOBHm_Chr1g0367331 RchiOBHm_Chr2g0103371
rosa_laevigata	RLG00000017231 RLG00000027279 RLG00000027284
rosa_multiflora	Rmu_sc0001555.1_g000003 Rmu_sc0002434.1_g000010 Rmu_sc0011000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00139680 Rroxscaffold_4G00289390 Rroxscaffold_4G00289470 Rroxscaffold_4G00289480
rosa_rugosa	Rorug02G0114700 Rorug06G0002300
rosa_samantha	Rh1AG342600 Rh1BG303200 Rh1BG303600 Rh1BG303700 Rh1CG319500 Rh1CG319700 Rh1DG335600 Rh1DG336000 Rh1DG336100 Rh2AG162700 Rh2BG169800 Rh2CG169900 Rh2DG168800
rosa_wichuraiana	Rw1G030440 Rw2G012780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	144
AhlI	ACTAGT	1 cut(s)	5
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	6 cut(s)	140, 229, 286, 303, 325, 412
AluI	AGCT	6 cut(s)	140, 229, 286, 303, 325, 412
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	6 cut(s)	49, 134, 137, 229, 239, 303
AseI	ATTAAT	1 cut(s)	42
AsuII	TTCGAA	1 cut(s)	19
AxyI	CCTNAGG	1 cut(s)	279
BanII	GRGCYC	2 cut(s)	162, 200
BbvI	GCAGC	6 cut(s)	61, 146, 149, 216, 251, 290
BccI	CCATC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	333
BciVI	GTATCC	1 cut(s)	238
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	2 cut(s)	6, 451
BfuI	GTATCC	1 cut(s)	238
BisI	GCNGC	6 cut(s)	50, 135, 138, 230, 240, 304
BlsI	GCNGC	6 cut(s)	51, 136, 139, 231, 241, 305
Bme1390I	CCNGG	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
Bpu14I	TTCGAA	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse21I	CCTNAGG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	6 cut(s)	61, 146, 149, 216, 251, 290
BseYI	CCCAGC	1 cut(s)	408
BshFI	GGCC	1 cut(s)	35
BsiWI	CGTACG	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	194
BsnI	GGCC	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	19
Bsp1286I	GDGCHC	2 cut(s)	162, 200
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	111
BspT104I	TTCGAA	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	333
BstBI	TTCGAA	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 116, 131, 184
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	331
BstV1I	GCAGC	6 cut(s)	61, 146, 149, 216, 251, 290
Bsu36I	CCTNAGG	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	35
BtgI	CCRYGG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	185
CciI	TCATGA	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	4 cut(s)	77, 130, 175, 437
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	35
Eco24I	GRGCYC	2 cut(s)	162, 200
Eco57I	CTGAAG	1 cut(s)	375
Eco81I	CCTNAGG	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	2 cut(s)	162, 200
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	4 cut(s)	80, 133, 178, 440
FaiI	YATR	7 cut(s)	78, 131, 154, 156, 176, 348, 438
FatI	CATG	4 cut(s)	76, 129, 174, 436
FauNDI	CATATG	1 cut(s)	154
Fnu4HI	GCNGC	6 cut(s)	50, 135, 138, 230, 240, 304
FriOI	GRGCYC	2 cut(s)	162, 200
Fsp4HI	GCNGC	6 cut(s)	50, 135, 138, 230, 240, 304
FspBI	CTAG	2 cut(s)	6, 451
GluI	GCNGC	6 cut(s)	50, 135, 138, 230, 240, 304
GsaI	CCCAGC	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	80, 133, 178, 440
HinfI	GANTC	3 cut(s)	16, 54, 73
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	2 cut(s)	77, 278
HpyAV	CCTTC	5 cut(s)	25, 367, 371, 399, 434
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	2 cut(s)	119, 436
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 116, 131, 184
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	4 cut(s)	80, 133, 178, 440
LmnI	GCTCC	2 cut(s)	115, 283
LpnPI	CCDG	6 cut(s)	249, 291, 318, 345, 415, 422
Lsp1109I	GCAGC	6 cut(s)	61, 146, 149, 216, 251, 290
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	2 cut(s)	6, 451
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	2 cut(s)	170, 294
MhlI	GDGCHC	2 cut(s)	162, 200
MluCI	AATT	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	48
MnlI	CCTC	6 cut(s)	82, 115, 274, 279, 324, 388
MseI	TTAA	1 cut(s)	42
MspA1I	CMGCKG	2 cut(s)	229, 242
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	4 cut(s)	65, 116, 131, 184
NcoI	CCATGG	1 cut(s)	129
NdeI	CATATG	1 cut(s)	154
NlaIII	CATG	4 cut(s)	80, 133, 178, 440
NlaIV	GGNNCC	1 cut(s)	111
NspI	RCATGY	1 cut(s)	178
NspV	TTCGAA	1 cut(s)	19
PagI	TCATGA	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	35
PfeI	GAWTC	2 cut(s)	16, 73
Pfl23II	CGTACG	1 cut(s)	290
PkrI	GCNGC	6 cut(s)	51, 136, 139, 231, 241, 305
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
PshBI	ATTAAT	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	331
PspLI	CGTACG	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	111
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	6 cut(s)	50, 135, 138, 230, 240, 304
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	2 cut(s)	162, 200
SetI	ASST	9 cut(s)	142, 231, 271, 288, 296, 305, 327, 399, 414
SfaNI	GCATC	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	19
SpeI	ACTAGT	1 cut(s)	5
Sse9I	AATT	1 cut(s)	148
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	2 cut(s)	6, 451
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	129
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	1 cut(s)	19
TasI	AATT	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	16, 73
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseI	GCWGC	6 cut(s)	49, 134, 137, 229, 239, 303
TspDTI	ATGAA	2 cut(s)	141, 453
VspI	ATTAAT	1 cut(s)	42
XceI	RCATGY	1 cut(s)	178
XcmI	CCANNNNNNNNNTGG	2 cut(s)	339, 416
XspI	CTAG	2 cut(s)	6, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.