Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002708

Physical Location & Seq

Genomic Coordinates Forward (+)

58381641 .. 58382392

Gene Structure 752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G030440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGATAAACTGAAATTGTTAAGGTTAAACTGGTACCAACTTATTAGAGTCGGTGAAGGACTCGGAGAAAGCTGCCAATGGTTGGAGACGTTTGGGGATGCTGGACTGGTCATCTTCTGTCTGTCCTTCAGTGACTATGATCAGTTTTCTGCTGATGGTAACAGCTCTATCACTAACAAGATGTTACAGAGCAGAGCTGTATTTGAAAGCATTGTTACTCATTCAAGCTTTGAGAAGATGAACTGCCTTTTGCTTCTAAGCAAGTTTGATTTGTTTGTGAAAAAGATAGCACGGGTACCGCTAACTCAGTGCGACTGGTTTGATGATTTTAAGCCATTGCTTAGCTATGATCTGGGTCAACCAGCATATGAGTACGTAGCAGTGAAGTTCAAGAGGCTCTACTCCTCTCTAACCAACAAGAAATTGTATGTTTCTCTGGTGGAGGATTTTGAGCCTGATTCCGTAATTGGAGCCCTTAAATATTCAACAGAGATTTTAAAATGGGACAATTTGATAGGCAATTGCTATTTGTCAATTCAAGATTATTCCATTTGTTCATCGATGACATCAGGGCCCGCCCCCTCAATCAGTTTCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0004857 GO:0005095 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009898 GO:0009987 GO:0016020 GO:0016247 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0030234 GO:0030695 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034260 GO:0035639 GO:0036094 GO:0043086 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0048519 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051346 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098772 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

199

Amino Acids

22.7

Weight (kDa)

5.23

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-alpha	PF00503	12 - 159	7.1e-26	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23460
fragaria_vesca	FvH4_1g14590 FvH4_1g14590
malus_domestica	MD00G1067300.v1.1 MD02G1159500.v1.1
prunus_persica	Prupe.7G144400_v2.0.a1
pyrus_communis	pycom02g12580 pycom15g23720
rosa_chinensis	RchiOBHm_Chr1g0367271 RchiOBHm_Chr1g0367281 RchiOBHm_Chr1g0367331 RchiOBHm_Chr2g0103371
rosa_laevigata	RLG00000017231 RLG00000027279 RLG00000027284
rosa_multiflora	Rmu_sc0001555.1_g000003 Rmu_sc0002434.1_g000010 Rmu_sc0011000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00139680 Rroxscaffold_4G00289390 Rroxscaffold_4G00289470 Rroxscaffold_4G00289480
rosa_rugosa	Rorug02G0114700 Rorug06G0002300
rosa_samantha	Rh1AG342600 Rh1BG303200 Rh1BG303600 Rh1BG303700 Rh1CG319500 Rh1CG319700 Rh1DG335600 Rh1DG336000 Rh1DG336100 Rh2AG162700 Rh2BG169800 Rh2CG169900 Rh2DG168800
rosa_wichuraiana	Rw1G030440 Rw2G012780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	33, 295
AccB1I	GGYRCC	2 cut(s)	33, 295
AccB7I	CCANNNNNTGG	1 cut(s)	82
AciI	CCGC	2 cut(s)	299, 576
AcuI	CTGAAG	1 cut(s)	112
AfaI	GTAC	3 cut(s)	35, 297, 374
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	5 cut(s)	206, 225, 391, 486, 539
AluBI	AGCT	5 cut(s)	72, 165, 197, 228, 345
AluI	AGCT	5 cut(s)	72, 165, 197, 228, 345
Alw26I	GTCTC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	572
ApaI	GGGCCC	1 cut(s)	576
ApeKI	GCWGC	1 cut(s)	72
Asp718I	GGTACC	2 cut(s)	33, 295
AspS9I	GGNCC	2 cut(s)	572, 573
AsuHPI	GGTGA	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	576
BanI	GGYRCC	2 cut(s)	33, 295
BanII	GRGCYC	2 cut(s)	475, 576
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	149
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	80
BisI	GCNGC	1 cut(s)	73
BlpI	GCTNAGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	572, 573
BmiI	GGNNCC	4 cut(s)	35, 297, 472, 574
BmsI	GCATC	1 cut(s)	88
Bpu1102I	GCTNAGC	1 cut(s)	341
Bsa29I	ATCGAT	1 cut(s)	560
BsaAI	YACGTR	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	3 cut(s)	35, 111, 320
Bse3DI	GCAATG	1 cut(s)	335
BseCI	ATCGAT	1 cut(s)	560
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	3 cut(s)	35, 111, 320
BseRI	GAGGAG	1 cut(s)	394
BseSI	GKGCMC	1 cut(s)	576
BseXI	GCAGC	1 cut(s)	59
BshFI	GGCC	1 cut(s)	574
BshNI	GGYRCC	2 cut(s)	33, 295
BshVI	ATCGAT	1 cut(s)	560
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	80
BsmBI	CGTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	518
BsnI	GGCC	1 cut(s)	574
Bsp120I	GGGCCC	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	475, 576
Bsp143I	GATC	2 cut(s)	139, 349
Bsp1720I	GCTNAGC	1 cut(s)	341
BspACI	CCGC	2 cut(s)	299, 576
BspANI	GGCC	1 cut(s)	574
BspCNI	CTCAG	1 cut(s)	319
BspDI	ATCGAT	1 cut(s)	560
BspLI	GGNNCC	4 cut(s)	35, 297, 472, 574
BspT107I	GGYRCC	2 cut(s)	33, 295
BsrDI	GCAATG	1 cut(s)	335
BsrI	ACTGG	3 cut(s)	35, 111, 320
BssMI	GATC	2 cut(s)	139, 349
BstBAI	YACGTR	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	3 cut(s)	257, 306, 341
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	2 cut(s)	142, 352
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	2 cut(s)	139, 349
BstSLI	GKGCMC	1 cut(s)	576
BstSNI	TACGTA	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	59
Bsu15I	ATCGAT	1 cut(s)	560
BsuRI	GGCC	1 cut(s)	574
BsuTUI	ATCGAT	1 cut(s)	560
BtsCI	GGATG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	3 cut(s)	136, 314, 387
Cac8I	GCNNGC	1 cut(s)	576
Cfr13I	GGNCC	2 cut(s)	572, 573
ClaI	ATCGAT	1 cut(s)	560
Csp6I	GTAC	3 cut(s)	34, 296, 373
CviQI	GTAC	3 cut(s)	34, 296, 373
DdeI	CTNAG	3 cut(s)	257, 306, 341
DpnI	GATC	2 cut(s)	141, 351
DpnII	GATC	2 cut(s)	139, 349
DraI	TTTAAA	1 cut(s)	498
Eco105I	TACGTA	1 cut(s)	376
Eco24I	GRGCYC	2 cut(s)	475, 576
Eco57I	CTGAAG	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	572
EcoT38I	GRGCYC	2 cut(s)	475, 576
Esp3I	CGTCTC	1 cut(s)	80
FaiI	YATR	5 cut(s)	138, 348, 367, 369, 429
FaqI	GGGAC	1 cut(s)	518
FauI	CCCGC	1 cut(s)	583
FauNDI	CATATG	1 cut(s)	367
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	2 cut(s)	475, 576
Fsp4HI	GCNGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	574
HincII	GTYRAC	1 cut(s)	359
HindII	GTYRAC	1 cut(s)	359
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	3 cut(s)	48, 60, 458
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	2 cut(s)	65, 596
Hpy188III	TCNNGA	2 cut(s)	391, 539
Hpy8I	GTNNAC	1 cut(s)	359
HpyAV	CCTTC	2 cut(s)	50, 136
HpyCH4IV	ACGT	2 cut(s)	89, 375
HpyF3I	CTNAG	3 cut(s)	257, 306, 341
HpySE526I	ACGT	2 cut(s)	89, 375
KpnI	GGTACC	2 cut(s)	37, 299
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	139, 349
LmnI	GCTCC	1 cut(s)	470
LpnPI	CCDG	9 cut(s)	16, 87, 92, 301, 338, 375, 422, 468, 555
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	88
MaeII	ACGT	2 cut(s)	89, 375
MaeIII	GTNAC	4 cut(s)	131, 158, 183, 214
MalI	GATC	2 cut(s)	141, 351
MboI	GATC	2 cut(s)	139, 349
MboII	GAAGA	2 cut(s)	106, 247
MfeI	CAATTG	1 cut(s)	520
MhlI	GDGCHC	2 cut(s)	475, 576
MluCI	AATT	6 cut(s)	14, 422, 465, 508, 520, 534
MlyI	GAGTC	2 cut(s)	54, 57
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	4 cut(s)	387, 415, 436, 592
MseI	TTAA	5 cut(s)	20, 26, 330, 477, 497
MunI	CAATTG	1 cut(s)	520
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	2 cut(s)	139, 349
NlaIV	GGNNCC	4 cut(s)	35, 297, 472, 574
NmuCI	GTSAC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	458
PflMI	CCANNNNNTGG	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	74
PleI	GAGTC	2 cut(s)	54, 56
PpsI	GAGTC	2 cut(s)	54, 56
Ppu21I	YACGTR	1 cut(s)	376
PspN4I	GGNNCC	4 cut(s)	35, 297, 472, 574
PspOMI	GGGCCC	1 cut(s)	572
PspPI	GGNCC	2 cut(s)	572, 573
RsaI	GTAC	3 cut(s)	35, 297, 374
RsaNI	GTAC	3 cut(s)	34, 296, 373
SaqAI	TTAA	5 cut(s)	20, 26, 330, 477, 497
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	2 cut(s)	139, 349
Sau96I	GGNCC	2 cut(s)	572, 573
SchI	GAGTC	2 cut(s)	54, 57
SduI	GDGCHC	2 cut(s)	475, 576
SetI	ASST	8 cut(s)	26, 74, 92, 167, 199, 230, 347, 378
SfaNI	GCATC	1 cut(s)	88
SnaBI	TACGTA	1 cut(s)	376
Sse9I	AATT	6 cut(s)	14, 422, 465, 508, 520, 534
SsiI	CCGC	2 cut(s)	299, 576
SspI	AATATT	1 cut(s)	482
TaiI	ACGT	2 cut(s)	92, 378
TaqI	TCGA	1 cut(s)	560
TasI	AATT	6 cut(s)	14, 422, 465, 508, 520, 534
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	5 cut(s)	20, 26, 330, 477, 497
Tru9I	TTAA	5 cut(s)	20, 26, 330, 477, 497
TscAI	CASTG	3 cut(s)	136, 314, 387
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	72
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	254, 546
TspGWI	ACGGA	1 cut(s)	451
TspRI	CASTG	3 cut(s)	136, 314, 387
Van91I	CCANNNNNTGG	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.