RchiOBHm_Chr1g0370991

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002494
Physical Location & Seq
Reverse (-)
60354060 .. 60354867
808 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 672 bp
ATGTTGTTTGCTCACACGTTATCTACTACTACTATAAATACCCCACCTCTCCATTCCCATTTTCTCCAAGTAGTTTTAGTCTCACGTTCTCAACTGTCACAGTCCTCTTTCTTAGTCATCCTCGATCTCGTCTCCAGACCTCTCGAAACCTTTCTCAAAAGCCAAATAATGGGCGGAAATGGAACTTCACCGTGCGCCTCTTGCAAGTTGCTGAGACGCCGATGCGCCCAAGACTGCATTTTTGCCCCTTACTTTCCCTCCGATGACCCCCACAAGTTCGCCATCGTGCACAAAGTCTTCGGTGCTAGCAATGTTAGCAAGATGTTACAGGAGCTTCCAGTTCACCAGAGAACAGATGCAGTGAGCAGTCTAGTGTATGAAGCCAATGCAAGAGTGAGAGACCCAGTGTATGGGTGTGTCGGGGCCATTTCTTGCCTGCAAAACCAAGTCTCTGAGCTGCAAATGCAACTTGCTGGGGCTCAGGCCGAGATCCTTTGCATTCAGATGCAGCAAGAGCCTAAGGTACTCCCTTCCCAGCAGATTGACACGTGCACAGACGATGAGAGGACATATTTCCTCAACAACAATCTCCCTCAGTACCTCAACTTTCCCTCTTCTAGTTCTGGCAATGTAATCCAAGACTCTCAAGAGGGAGGGCACCTTTGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

223

Amino Acids

24.7

Weight (kDa)

6.13

Isoelectric Point (pI)

60.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 64 - 161 3.1e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 657
AccB7I CCANNNNNTGG 2 cut(s) 169, 410
AciI CCGC 1 cut(s) 174
AclWI GGATC 1 cut(s) 484
AcvI CACGTG 1 cut(s) 549
AcyI GRCGYC 1 cut(s) 217
AfaI GTAC 2 cut(s) 525, 599
AfiI CCNNNNNNNGG 2 cut(s) 169, 410
AflIII ACRYGT 2 cut(s) 15, 546
AluBI AGCT 2 cut(s) 334, 457
AluI AGCT 2 cut(s) 334, 457
Alw21I GWGCWC 2 cut(s) 291, 554
Alw26I GTCTC 5 cut(s) 85, 136, 208, 393, 454
Alw44I GTGCAC 2 cut(s) 287, 550
AlwI GGATC 1 cut(s) 484
AoxI GGCC 2 cut(s) 423, 483
ApaLI GTGCAC 2 cut(s) 287, 550
ApeKI GCWGC 2 cut(s) 457, 508
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
Asp700I GAANNNNTTC 1 cut(s) 150
AspLEI GCGC 2 cut(s) 197, 227
AspS9I GGNCC 1 cut(s) 423
AsuHPI GGTGA 2 cut(s) 180, 335
AsuNHI GCTAGC 1 cut(s) 305
AxyI CCTNAGG 1 cut(s) 519
BaeGI GKGCMC 3 cut(s) 291, 554, 660
BanI GGYRCC 1 cut(s) 657
BanII GRGCYC 1 cut(s) 481
BbrPI CACGTG 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 289
Bbv12I GWGCWC 2 cut(s) 291, 554
BbvI GCAGC 2 cut(s) 444, 520
BccI CCATC 1 cut(s) 290
BcoDI GTCTC 5 cut(s) 85, 136, 208, 393, 454
BfaI CTAG 3 cut(s) 306, 371, 618
BisI GCNGC 2 cut(s) 458, 509
BlsI GCNGC 2 cut(s) 459, 510
BmgT120I GGNCC 1 cut(s) 423
BmiI GGNNCC 2 cut(s) 424, 659
BmrI ACTGGG 1 cut(s) 398
BmsI GCATC 3 cut(s) 212, 346, 495
BmtI GCTAGC 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 289
BpmI CTGGAG 1 cut(s) 118
Bpu10I CCTNAGC 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 630
BsaAI YACGTR 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 217
BsaI GGTCTC 1 cut(s) 393
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 410
Bse1I ACTGG 2 cut(s) 338, 404
Bse21I CCTNAGG 1 cut(s) 519
Bse3DI GCAATG 2 cut(s) 316, 634
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 169, 410
BseMI GCAATG 2 cut(s) 316, 634
BseMII CTCAG 4 cut(s) 203, 444, 494, 608
BseNI ACTGG 2 cut(s) 338, 404
BseSI GKGCMC 3 cut(s) 291, 554, 660
BseXI GCAGC 2 cut(s) 444, 520
BseYI CCCAGC 2 cut(s) 473, 534
BshFI GGCC 2 cut(s) 425, 485
BshNI GGYRCC 1 cut(s) 657
BsiHKAI GWGCWC 2 cut(s) 291, 554
BslI CCNNNNNNNGG 2 cut(s) 169, 410
BsmAI GTCTC 5 cut(s) 85, 136, 208, 393, 454
BsmBI CGTCTC 2 cut(s) 136, 208
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 2 cut(s) 425, 485
Bso31I GGTCTC 1 cut(s) 393
Bsp1286I GDGCHC 4 cut(s) 291, 481, 554, 660
Bsp143I GATC 2 cut(s) 124, 489
BspACI CCGC 1 cut(s) 174
BspANI GGCC 2 cut(s) 425, 485
BspCNI CTCAG 4 cut(s) 204, 445, 493, 607
BspLI GGNNCC 2 cut(s) 424, 659
BspOI GCTAGC 1 cut(s) 309
BspPI GGATC 1 cut(s) 484
BspT107I GGYRCC 1 cut(s) 657
BspTNI GGTCTC 1 cut(s) 393
BsrDI GCAATG 2 cut(s) 316, 634
BsrI ACTGG 2 cut(s) 338, 404
BssMI GATC 2 cut(s) 124, 489
BssNI GRCGYC 1 cut(s) 217
Bst4CI ACNGT 3 cut(s) 96, 102, 192
Bst6I CTCTTC 1 cut(s) 619
BstACI GRCGYC 1 cut(s) 217
BstBAI YACGTR 1 cut(s) 549
BstC8I GCNNGC 2 cut(s) 307, 437
BstDEI CTNAG 6 cut(s) 112, 212, 453, 480, 519, 594
BstF5I GGATG 1 cut(s) 117
BstHHI GCGC 2 cut(s) 197, 227
BstKTI GATC 2 cut(s) 127, 492
BstMAI GTCTC 5 cut(s) 85, 136, 208, 393, 454
BstMBI GATC 2 cut(s) 124, 489
BstMWI GCNNNNNNNGC 4 cut(s) 201, 315, 463, 514
BstSLI GKGCMC 3 cut(s) 291, 554, 660
BstV1I GCAGC 2 cut(s) 444, 520
BstV2I GAAGAC 1 cut(s) 289
BstX2I RGATCY 1 cut(s) 489
BstYI RGATCY 1 cut(s) 489
Bsu36I CCTNAGG 1 cut(s) 519
BsuRI GGCC 2 cut(s) 425, 485
BtsCI GGATG 1 cut(s) 117
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 366, 411
Cac8I GCNNGC 2 cut(s) 307, 437
CfoI GCGC 2 cut(s) 197, 227
Cfr13I GGNCC 1 cut(s) 423
CseI GACGC 1 cut(s) 225
Csp6I GTAC 2 cut(s) 524, 598
CviAII CATG 1 cut(s) 669
CviJI RGCY 8 cut(s) 162, 334, 383, 425, 457, 479, 485, 517
CviKI_1 RGCY 8 cut(s) 162, 334, 383, 425, 457, 479, 485, 517
CviQI GTAC 2 cut(s) 524, 598
DdeI CTNAG 6 cut(s) 112, 212, 453, 480, 519, 594
DpnI GATC 2 cut(s) 126, 491
DpnII GATC 2 cut(s) 124, 489
Eam1104I CTCTTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 619
EciI GGCGGA 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 481
Eco31I GGTCTC 1 cut(s) 393
Eco72I CACGTG 1 cut(s) 549
Eco81I CCTNAGG 1 cut(s) 519
EcoT38I GRGCYC 1 cut(s) 481
Esp3I CGTCTC 2 cut(s) 136, 208
FaeI CATG 1 cut(s) 672
FaiI YATR 5 cut(s) 35, 378, 411, 571, 670
FatI CATG 1 cut(s) 668
Fnu4HI GCNGC 2 cut(s) 458, 509
FokI GGATG 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 2 cut(s) 458, 509
FspBI CTAG 3 cut(s) 306, 371, 618
GlaI GCGC 2 cut(s) 196, 226
GluI GCNGC 2 cut(s) 458, 509
GsaI CCCAGC 2 cut(s) 477, 538
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 2 cut(s) 425, 485
HgaI GACGC 1 cut(s) 225
HhaI GCGC 2 cut(s) 197, 227
Hin1I GRCGYC 1 cut(s) 217
Hin1II CATG 1 cut(s) 672
Hin6I GCGC 2 cut(s) 195, 225
HinP1I GCGC 2 cut(s) 195, 225
HinfI GANTC 1 cut(s) 641
HphI GGTGA 2 cut(s) 180, 335
Hpy166II GTNNAC 3 cut(s) 289, 343, 552
Hpy188I TCNGA 3 cut(s) 262, 454, 504
Hpy188III TCNNGA 3 cut(s) 135, 143, 647
Hpy8I GTNNAC 3 cut(s) 289, 343, 552
HpyAV CCTTC 1 cut(s) 540
HpyCH4III ACNGT 3 cut(s) 96, 102, 192
HpyCH4IV ACGT 3 cut(s) 17, 85, 548
HpyF10VI GCNNNNNNNGC 4 cut(s) 201, 315, 463, 514
HpyF3I CTNAG 6 cut(s) 112, 212, 453, 480, 519, 594
HpySE526I ACGT 3 cut(s) 17, 85, 548
Hsp92I GRCGYC 1 cut(s) 217
Hsp92II CATG 1 cut(s) 672
HspAI GCGC 2 cut(s) 195, 225
Kzo9I GATC 2 cut(s) 124, 489
LmnI GCTCC 1 cut(s) 331
Lsp1109I GCAGC 2 cut(s) 444, 520
LweI GCATC 3 cut(s) 212, 346, 495
MaeI CTAG 3 cut(s) 306, 371, 618
MaeII ACGT 3 cut(s) 17, 85, 548
MaeIII GTNAC 2 cut(s) 96, 324
MalI GATC 2 cut(s) 126, 491
MboI GATC 2 cut(s) 124, 489
MboII GAAGA 2 cut(s) 289, 606
MflI RGATCY 1 cut(s) 489
MhlI GDGCHC 4 cut(s) 291, 481, 554, 660
MlyI GAGTC 1 cut(s) 635
MroXI GAANNNNTTC 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 503
Mva1269I GAATGC 1 cut(s) 498
MwoI GCNNNNNNNGC 4 cut(s) 201, 315, 463, 514
NdeII GATC 2 cut(s) 124, 489
NheI GCTAGC 1 cut(s) 305
NlaIII CATG 1 cut(s) 672
NlaIV GGNNCC 2 cut(s) 424, 659
NmeAIII GCCGAG 1 cut(s) 511
NmuCI GTSAC 1 cut(s) 96
PctI GAATGC 1 cut(s) 498
PdmI GAANNNNTTC 1 cut(s) 150
PflMI CCANNNNNTGG 2 cut(s) 169, 410
PkrI GCNGC 2 cut(s) 459, 510
PleI GAGTC 1 cut(s) 635
PmaCI CACGTG 1 cut(s) 549
PmlI CACGTG 1 cut(s) 549
PpsI GAGTC 1 cut(s) 635
Ppu21I YACGTR 1 cut(s) 549
PspCI CACGTG 1 cut(s) 549
PspFI CCCAGC 2 cut(s) 473, 534
PspN4I GGNNCC 2 cut(s) 424, 659
PspPI GGNCC 1 cut(s) 423
PsuI RGATCY 1 cut(s) 489
RsaI GTAC 2 cut(s) 525, 599
RsaNI GTAC 2 cut(s) 524, 598
RseI CAYNNNNRTG 1 cut(s) 503
SatI GCNGC 2 cut(s) 458, 509
Sau3AI GATC 2 cut(s) 124, 489
Sau96I GGNCC 1 cut(s) 423
SchI GAGTC 1 cut(s) 635
SduI GDGCHC 4 cut(s) 291, 481, 554, 660
SfaNI GCATC 3 cut(s) 212, 346, 495
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 645
SmoI CTYRAG 1 cut(s) 645
SsiI CCGC 1 cut(s) 174
SspMI CTAG 3 cut(s) 306, 371, 618
TaaI ACNGT 3 cut(s) 96, 102, 192
TaiI ACGT 3 cut(s) 20, 88, 551
TaqI TCGA 2 cut(s) 123, 144
TscAI CASTG 2 cut(s) 366, 411
TseFI GTSAC 1 cut(s) 96
TseI GCWGC 2 cut(s) 457, 508
Tsp45I GTSAC 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 393
TspRI CASTG 2 cut(s) 366, 411
Van91I CCANNNNNTGG 2 cut(s) 169, 410
VneI GTGCAC 2 cut(s) 287, 550
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 3 cut(s) 306, 371, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.