Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCTGATGGGCACCTTGTTGGAGATGGCTGTTCTTTGCAATTGCCAGAACGTTTTCTTATGTCTGTGAAGCCTCTTGCAAAGCATGTATCGGTACGTTTAGTTGACGAAAAGAAAGACTCTCGTGTTTTTTATGGAAATGATAACTTCTATGTGCTCTATAGGCTTCATCAAATTTTATACGAAAGGATTTTATCTGCAAAATCAAATTCAGTAGGAGCAGAAACTAAGTGGAGAACTTCCAAGGATGGCAACCCTCCAGATCTTTATGGCAGGTTTATGAGTGCACTGTACAACTTGCTTGATGGATCTGCAGATAATGCAAAATTTGAGGATGAGTGCCGAGCTATTATTGGAAATCAGTCGTACATCTTATTCACATTGGACAAGTTAATATATAAATTTGTTAAACAGCTTCAAACGGTTGCAACTGATGAGATGGACAATAAGCTTCTTCAGTTATATGAATATGAAAAGTCTCGGAAAAAAGGGAAGCTAATTGATTCTGTCTATTTTGAAAACACACGTGTCCTTGTTCACGAGAACATTTACAGATTGGAATTCTTCTCTGCACCCTCCCGGCTGTCCATCCAGCTGATGGACAGCGTGAGTGAAAAGCCTGAGGCGTCGGCAGTTTCTATGGAACCTAATTTTTCATCTTATCTGCACAATGATTTCCTGTCACTTTATCCTGGCAAAAAGGAGCCACATGGAATTACGAGAAACAAGCGCAAATATGCAGGGCAAGATGAATCCACTGCGTTTTCCAATGCCATGGAGGATGTTCAATTAGTCAATGGGTTGGAGTGTAAAATAGCTTGCAACTCATCCAAGATCTCTTATGTTCTCGACACAGAAGATTACTTCTTCCGTATGAGAAGGAAAAGGAGAAAGAGTCCAGATCACCATATTGTGATCAGACGAGGGTACAGCGGTTCCACAAATTCTTGTCCGTCTCATAATAGCTTAGAATTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

326

Amino Acids

37.52

Weight (kDa)

8.6

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sin3a_C	PF16879	44 - 289	4.3e-45	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	12
AccB7I	CCANNNNNTGG	1 cut(s)	598
AciI	CCGC	1 cut(s)	933
AclI	AACGTT	1 cut(s)	52
AclWI	GGATC	1 cut(s)	316
AcsI	RAATTY	7 cut(s)	174, 208, 326, 401, 560, 943, 971
AcuI	CTGAAG	1 cut(s)	440
AcvI	CACGTG	1 cut(s)	527
AcyI	GRCGYC	1 cut(s)	626
AfaI	GTAC	4 cut(s)	96, 293, 368, 929
AfiI	CCNNNNNNNGG	1 cut(s)	598
AflIII	ACRYGT	2 cut(s)	524, 526
AgsI	TTSAA	3 cut(s)	419, 518, 788
AjnI	CCWGG	1 cut(s)	691
AluBI	AGCT	7 cut(s)	347, 415, 451, 496, 595, 818, 966
AluI	AGCT	7 cut(s)	347, 415, 451, 496, 595, 818, 966
Alw21I	GWGCWC	2 cut(s)	159, 289
Alw26I	GTCTC	2 cut(s)	483, 960
Alw44I	GTGCAC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	316
ApaLI	GTGCAC	1 cut(s)	285
ApoI	RAATTY	7 cut(s)	174, 208, 326, 401, 560, 943, 971
Asp700I	GAANNNNTTC	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	732
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	1 cut(s)	896
AxyI	CCTNAGG	1 cut(s)	621
BaeGI	GKGCMC	2 cut(s)	15, 289
BaeI	ACNNNNGTAYC	2 cut(s)	919, 952
BanI	GGYRCC	1 cut(s)	12
BauI	CACGAG	2 cut(s)	123, 539
BbrPI	CACGTG	1 cut(s)	527
Bbv12I	GWGCWC	2 cut(s)	159, 289
BccI	CCATC	7 cut(s)	2, 20, 242, 299, 433, 592, 596
BciT130I	CCWGG	1 cut(s)	693
BclI	TGATCA	1 cut(s)	915
BcnI	CCSGG	1 cut(s)	580
BcoDI	GTCTC	2 cut(s)	483, 960
BfmI	CTRYAG	2 cut(s)	160, 312
BfuAI	ACCTGC	1 cut(s)	264
BglII	AGATCT	2 cut(s)	262, 834
Bme1390I	CCNGG	2 cut(s)	580, 693
BmiI	GGNNCC	4 cut(s)	14, 645, 705, 937
BmrFI	CCNGG	2 cut(s)	580, 693
BpmI	CTGGAG	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	580
BsaAI	YACGTR	1 cut(s)	527
BsaHI	GRCGYC	1 cut(s)	626
BsaJI	CCNNGG	2 cut(s)	243, 774
BsaXI	ACNNNNNCTCC	2 cut(s)	880, 910
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse21I	CCTNAGG	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	693
BseDI	CCNNGG	2 cut(s)	243, 774
BseGI	GGATG	5 cut(s)	253, 340, 588, 787, 827
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMII	CTCAG	1 cut(s)	612
BseSI	GKGCMC	2 cut(s)	15, 289
BsgI	GTGCAG	2 cut(s)	555, 650
BshNI	GGYRCC	1 cut(s)	12
BsiHKAI	GWGCWC	2 cut(s)	159, 289
BsiSI	CCGG	1 cut(s)	580
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	2 cut(s)	483, 960
BsmBI	CGTCTC	1 cut(s)	960
Bsp1286I	GDGCHC	3 cut(s)	15, 159, 289
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	5 cut(s)	262, 308, 834, 901, 915
Bsp19I	CCATGG	1 cut(s)	774
BspACI	CCGC	1 cut(s)	933
BspCNI	CTCAG	1 cut(s)	613
BspLI	GGNNCC	4 cut(s)	14, 645, 705, 937
BspMAI	CTGCAG	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	291
BssECI	CCNNGG	2 cut(s)	243, 774
BssMI	GATC	5 cut(s)	262, 308, 834, 901, 915
BssNI	GRCGYC	1 cut(s)	626
BssSI	CACGAG	2 cut(s)	123, 539
BssT1I	CCWWGG	2 cut(s)	243, 774
Bst2BI	CACGAG	2 cut(s)	123, 539
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	2 cut(s)	291, 424
BstACI	GRCGYC	1 cut(s)	626
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstAUI	TGTACA	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	820
BstDEI	CTNAG	3 cut(s)	228, 621, 967
BstDSI	CCRYGG	1 cut(s)	774
BstF5I	GGATG	5 cut(s)	253, 340, 588, 787, 827
BstHHI	GCGC	1 cut(s)	732
BstKTI	GATC	5 cut(s)	265, 311, 837, 904, 918
BstMAI	GTCTC	2 cut(s)	483, 960
BstMBI	GATC	5 cut(s)	262, 308, 834, 901, 915
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 320
BstNI	CCWGG	1 cut(s)	693
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	578, 691
BstSFI	CTRYAG	2 cut(s)	160, 312
BstSLI	GKGCMC	2 cut(s)	15, 289
BstX2I	RGATCY	3 cut(s)	262, 308, 834
BstXI	CCANNNNNNTGG	1 cut(s)	775
BstYI	RGATCY	3 cut(s)	262, 308, 834
Bsu36I	CCTNAGG	1 cut(s)	621
BtgI	CCRYGG	1 cut(s)	774
BtsCI	GGATG	5 cut(s)	253, 340, 588, 787, 827
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	2 cut(s)	287, 756
BveI	ACCTGC	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	820
CfoI	GCGC	1 cut(s)	732
CseI	GACGC	1 cut(s)	615
Csp6I	GTAC	4 cut(s)	95, 292, 367, 928
CviAII	CATG	3 cut(s)	86, 710, 775
CviQI	GTAC	4 cut(s)	95, 292, 367, 928
DdeI	CTNAG	3 cut(s)	228, 621, 967
DpnI	GATC	5 cut(s)	264, 310, 836, 903, 917
DpnII	GATC	5 cut(s)	262, 308, 834, 901, 915
Eco130I	CCWWGG	2 cut(s)	243, 774
Eco57I	CTGAAG	1 cut(s)	440
Eco72I	CACGTG	1 cut(s)	527
Eco81I	CCTNAGG	1 cut(s)	621
EcoRI	GAATTC	2 cut(s)	560, 971
EcoRII	CCWGG	1 cut(s)	691
EcoT14I	CCWWGG	2 cut(s)	243, 774
ErhI	CCWWGG	2 cut(s)	243, 774
Esp3I	CGTCTC	1 cut(s)	960
FaeI	CATG	3 cut(s)	89, 713, 778
FatI	CATG	3 cut(s)	85, 709, 774
FbaI	TGATCA	1 cut(s)	915
FokI	GGATG	5 cut(s)	260, 347, 575, 794, 814
GlaI	GCGC	1 cut(s)	731
GsuI	CTGGAG	1 cut(s)	243
HapII	CCGG	1 cut(s)	580
HgaI	GACGC	1 cut(s)	615
HhaI	GCGC	1 cut(s)	732
Hin1I	GRCGYC	1 cut(s)	626
Hin1II	CATG	3 cut(s)	89, 713, 778
Hin6I	GCGC	1 cut(s)	730
HinP1I	GCGC	1 cut(s)	730
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	4 cut(s)	119, 503, 752, 895
HpaII	CCGG	1 cut(s)	580
HphI	GGTGA	1 cut(s)	896
Hpy166II	GTNNAC	3 cut(s)	106, 287, 538
Hpy188I	TCNGA	2 cut(s)	483, 920
Hpy188III	TCNNGA	4 cut(s)	260, 539, 848, 899
Hpy8I	GTNNAC	3 cut(s)	106, 287, 538
Hpy99I	CGWCG	1 cut(s)	631
HpyAV	CCTTC	1 cut(s)	873
HpyCH4III	ACNGT	2 cut(s)	291, 424
HpyCH4IV	ACGT	3 cut(s)	52, 97, 526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 320
HpyF3I	CTNAG	3 cut(s)	228, 621, 967
HpySE526I	ACGT	3 cut(s)	52, 97, 526
Hsp92I	GRCGYC	1 cut(s)	626
Hsp92II	CATG	3 cut(s)	89, 713, 778
HspAI	GCGC	1 cut(s)	730
Ksp22I	TGATCA	1 cut(s)	915
Kzo9I	GATC	5 cut(s)	262, 308, 834, 901, 915
LmnI	GCTCC	2 cut(s)	218, 703
MaeII	ACGT	3 cut(s)	52, 97, 526
MaeIII	GTNAC	1 cut(s)	681
MalI	GATC	5 cut(s)	264, 310, 836, 903, 917
MboI	GATC	5 cut(s)	262, 308, 834, 901, 915
MboII	GAAGA	4 cut(s)	446, 556, 859, 869
MfeI	CAATTG	1 cut(s)	41
MflI	RGATCY	3 cut(s)	262, 308, 834
MhlI	GDGCHC	3 cut(s)	15, 159, 289
MlyI	GAGTC	2 cut(s)	113, 904
MmeI	TCCRAC	1 cut(s)	783
MnlI	CCTC	7 cut(s)	84, 267, 325, 586, 616, 772, 917
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	2 cut(s)	392, 408
MspA1I	CMGCKG	2 cut(s)	595, 933
MspI	CCGG	1 cut(s)	580
MspR9I	CCNGG	2 cut(s)	580, 693
MunI	CAATTG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	693
MwoI	GCNNNNNNNGC	2 cut(s)	163, 320
NciI	CCSGG	1 cut(s)	580
NcoI	CCATGG	1 cut(s)	774
NdeII	GATC	5 cut(s)	262, 308, 834, 901, 915
NlaIII	CATG	3 cut(s)	89, 713, 778
NlaIV	GGNNCC	4 cut(s)	14, 645, 705, 937
NmeAIII	GCCGAG	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	681
NspI	RCATGY	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	503, 752
PflMI	CCANNNNNTGG	1 cut(s)	598
PleI	GAGTC	2 cut(s)	113, 903
PmaCI	CACGTG	1 cut(s)	527
PmlI	CACGTG	1 cut(s)	527
PpsI	GAGTC	2 cut(s)	113, 903
Ppu21I	YACGTR	1 cut(s)	527
Psp1406I	AACGTT	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	691
PspCI	CACGTG	1 cut(s)	527
PspGI	CCWGG	1 cut(s)	691
PspN4I	GGNNCC	4 cut(s)	14, 645, 705, 937
PstI	CTGCAG	1 cut(s)	316
PsuI	RGATCY	3 cut(s)	262, 308, 834
PvuII	CAGCTG	1 cut(s)	595
RsaI	GTAC	4 cut(s)	96, 293, 368, 929
RsaNI	GTAC	4 cut(s)	95, 292, 367, 928
SaqAI	TTAA	2 cut(s)	392, 408
Sau3AI	GATC	5 cut(s)	262, 308, 834, 901, 915
SchI	GAGTC	2 cut(s)	113, 904
ScrFI	CCNGG	2 cut(s)	580, 693
SduI	GDGCHC	3 cut(s)	15, 159, 289
SfcI	CTRYAG	2 cut(s)	160, 312
SsiI	CCGC	1 cut(s)	933
StyD4I	CCNGG	2 cut(s)	578, 691
StyI	CCWWGG	2 cut(s)	243, 774
TaaI	ACNGT	2 cut(s)	291, 424
TaiI	ACGT	3 cut(s)	55, 100, 529
TaqI	TCGA	1 cut(s)	849
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	503, 752
Tru1I	TTAA	2 cut(s)	392, 408
Tru9I	TTAA	2 cut(s)	392, 408
TscAI	CASTG	2 cut(s)	294, 763
TseFI	GTSAC	1 cut(s)	681
Tsp45I	GTSAC	1 cut(s)	681
TspDTI	ATGAA	5 cut(s)	158, 480, 486, 645, 765
TspGWI	ACGGA	2 cut(s)	860, 942
TspRI	CASTG	2 cut(s)	294, 763
Van91I	CCANNNNNTGG	1 cut(s)	598
VneI	GTGCAC	1 cut(s)	285
XapI	RAATTY	7 cut(s)	174, 208, 326, 401, 560, 943, 971
XceI	RCATGY	1 cut(s)	89
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XmnI	GAANNNNTTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.