Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Forward (+)

67376392 .. 67376933

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0544400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCTAGGGCTAACTTGGTTCTACTTCTAGTTGTCTCTCTTCTTGTCCTGATTTCAGTAGCTGAGAGTAAACGATTTGCTGTAGGATTTGCGGAGAAGAAGACTTCCGCGCTGGTCTGTAATTCTGTTTATGGTGCAGAGGAAGGTGATACTTGCACTAGTGTCGCTCAAACGTTCAAACTGAGTCTCGATGCCTTCCTTTCCATTAACCCTAATATCAATTGCGACGGCTTCTTTGTGGGTCAATGGCTCTGTACTGATGGTGCTCCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

91

Amino Acids

9.69

Weight (kDa)

5.13

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM	PF01476	48 - 85	1.9e-07	LysM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	110
AciI	CCGC	2 cut(s)	92, 108
AclI	AACGTT	1 cut(s)	173
AfaI	GTAC	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	178
AhlI	ACTAGT	1 cut(s)	158
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	2 cut(s)	40, 191
AlwNI	CAGNNNCTG	1 cut(s)	62
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspLEI	GCGC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	268
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	244
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BcoDI	GTCTC	2 cut(s)	40, 191
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	3 cut(s)	6, 29, 159
BfmI	CTRYAG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	54, 173
BsgI	GTGCAG	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	268
BsmAI	GTCTC	2 cut(s)	40, 191
Bsp1286I	GDGCHC	1 cut(s)	268
BspACI	CCGC	2 cut(s)	92, 108
BspCNI	CTCAG	2 cut(s)	55, 174
BspFNI	CGCG	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	63, 182
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	112
BstMAI	GTCTC	2 cut(s)	40, 191
BstSFI	CTRYAG	1 cut(s)	81
BstUI	CGCG	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	255
CviJI	RGCY	5 cut(s)	5, 11, 62, 231, 250
CviKI_1	RGCY	5 cut(s)	5, 11, 62, 231, 250
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	2 cut(s)	63, 182
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
FaiI	YATR	1 cut(s)	132
FspBI	CTAG	3 cut(s)	6, 29, 159
GlaI	GCGC	1 cut(s)	111
HhaI	GCGC	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	1 cut(s)	184
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	2 cut(s)	49, 188
Hpy8I	GTNNAC	1 cut(s)	71
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	137, 205
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	2 cut(s)	137, 156
HpyF3I	CTNAG	2 cut(s)	63, 182
HpySE526I	ACGT	1 cut(s)	173
HspAI	GCGC	1 cut(s)	110
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	2 cut(s)	62, 98
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	3 cut(s)	6, 29, 159
MaeII	ACGT	1 cut(s)	173
MboII	GAAGA	3 cut(s)	32, 109, 112
MfeI	CAATTG	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	2 cut(s)	121, 220
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	1 cut(s)	133
MseI	TTAA	1 cut(s)	207
MunI	CAATTG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	110
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp1406I	AACGTT	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	207
SchI	GAGTC	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	3 cut(s)	64, 148, 176
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	81
SpeI	ACTAGT	1 cut(s)	158
Sse9I	AATT	2 cut(s)	121, 220
SsiI	CCGC	2 cut(s)	92, 108
SspMI	CTAG	3 cut(s)	6, 29, 159
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	189
TasI	AATT	2 cut(s)	121, 220
TatI	WGTACW	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
XspI	CTAG	3 cut(s)	6, 29, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.