Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Reverse (-)

67336692 .. 67337500

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0544300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGGAACTAGTTCTCTTGGTACTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGACTACTTCCGAGGAAGGTAGTGCACATGATTACTATTTCGGTGGCTCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

213

Amino Acids

23.36

Weight (kDa)

5.09

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	4.3e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	510
AccIII	TCCGGA	1 cut(s)	626
AciI	CCGC	1 cut(s)	576
AclWI	GGATC	5 cut(s)	141, 333, 346, 381, 598
AcuI	CTGAAG	1 cut(s)	542
AcyI	GRCGYC	1 cut(s)	507
AfaI	GTAC	2 cut(s)	91, 328
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	1 cut(s)	473
AhlI	ACTAGT	2 cut(s)	314, 365
AjnI	CCWGG	2 cut(s)	92, 462
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	4 cut(s)	53, 199, 610, 632
AluI	AGCT	4 cut(s)	53, 199, 610, 632
Alw21I	GWGCWC	3 cut(s)	498, 550, 612
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	2 cut(s)	494, 546
AlwI	GGATC	5 cut(s)	141, 333, 346, 381, 598
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	626
ApaLI	GTGCAC	2 cut(s)	494, 546
ApeKI	GCWGC	3 cut(s)	50, 293, 632
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
Asp700I	GAANNNNTTC	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	452
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	360
BaeGI	GKGCMC	4 cut(s)	164, 306, 498, 550
BamHI	GGATCC	1 cut(s)	338
BanII	GRGCYC	2 cut(s)	262, 612
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	3 cut(s)	498, 550, 612
BbvI	GCAGC	3 cut(s)	62, 280, 619
BccI	CCATC	2 cut(s)	374, 631
BceAI	ACGGC	2 cut(s)	72, 514
BciT130I	CCWGG	2 cut(s)	94, 464
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	2 cut(s)	314, 365
BfaI	CTAG	3 cut(s)	315, 366, 640
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	51, 294, 633
BlpI	GCTNAGC	1 cut(s)	611
BlsI	GCNGC	3 cut(s)	52, 295, 634
Bme1390I	CCNGG	2 cut(s)	94, 464
Bme18I	GGWCC	1 cut(s)	360
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	5 cut(s)	6, 245, 340, 361, 409
BmrFI	CCNGG	2 cut(s)	94, 464
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	5 cut(s)	93, 179, 282, 444, 579
Bpu10I	CCTNAGC	1 cut(s)	571
Bpu1102I	GCTNAGC	1 cut(s)	611
BpuEI	CTTGAG	2 cut(s)	113, 626
BsaHI	GRCGYC	1 cut(s)	507
BsaJI	CCNNGG	3 cut(s)	306, 534, 586
BsaWI	WCCGGW	1 cut(s)	626
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	4 cut(s)	205, 299, 427, 596
BseAI	TCCGGA	1 cut(s)	626
BseBI	CCWGG	2 cut(s)	94, 464
BseDI	CCNNGG	3 cut(s)	306, 534, 586
BseGI	GGATG	2 cut(s)	434, 623
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	585, 625
BseNI	ACTGG	4 cut(s)	205, 299, 427, 596
BseRI	GAGGAG	3 cut(s)	44, 465, 468
BseSI	GKGCMC	4 cut(s)	164, 306, 498, 550
BseXI	GCAGC	3 cut(s)	62, 280, 619
BsiHKAI	GWGCWC	3 cut(s)	498, 550, 612
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	627
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	6 cut(s)	164, 262, 306, 498, 550, 612
Bsp13I	TCCGGA	1 cut(s)	626
Bsp143I	GATC	7 cut(s)	133, 186, 338, 386, 394, 457, 590
Bsp1720I	GCTNAGC	1 cut(s)	611
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	1 cut(s)	576
BspCNI	CTCAG	2 cut(s)	584, 624
BspEI	TCCGGA	1 cut(s)	626
BspLI	GGNNCC	5 cut(s)	6, 245, 340, 361, 409
BspPI	GGATC	5 cut(s)	141, 333, 346, 381, 598
BsrI	ACTGG	4 cut(s)	205, 299, 427, 596
BssECI	CCNNGG	3 cut(s)	306, 534, 586
BssMI	GATC	7 cut(s)	133, 186, 338, 386, 394, 457, 590
BssNI	GRCGYC	1 cut(s)	507
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	2 cut(s)	94, 464
Bst4CI	ACNGT	1 cut(s)	587
Bst6I	CTCTTC	1 cut(s)	483
BstACI	GRCGYC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	571, 611
BstDSI	CCRYGG	2 cut(s)	306, 586
BstEII	GGTNACC	1 cut(s)	515
BstF5I	GGATG	2 cut(s)	434, 623
BstKTI	GATC	7 cut(s)	136, 189, 341, 389, 397, 460, 593
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	7 cut(s)	133, 186, 338, 386, 394, 457, 590
BstNI	CCWGG	2 cut(s)	94, 464
BstPI	GGTNACC	1 cut(s)	515
BstSCI	CCNGG	2 cut(s)	92, 462
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	4 cut(s)	164, 306, 498, 550
BstV1I	GCAGC	3 cut(s)	62, 280, 619
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	5 cut(s)	133, 186, 338, 386, 590
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstYI	RGATCY	5 cut(s)	133, 186, 338, 386, 590
BtgI	CCRYGG	2 cut(s)	306, 586
BtsCI	GGATG	2 cut(s)	434, 623
BtsIMutI	CAGTG	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	360
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	90, 327
CviAII	CATG	3 cut(s)	70, 307, 551
CviJI	RGCY	9 cut(s)	53, 87, 199, 260, 293, 570, 610, 615, 632
CviKI_1	RGCY	9 cut(s)	53, 87, 199, 260, 293, 570, 610, 615, 632
CviQI	GTAC	2 cut(s)	90, 327
DdeI	CTNAG	2 cut(s)	571, 611
DpnI	GATC	7 cut(s)	135, 188, 340, 388, 396, 459, 592
DpnII	GATC	7 cut(s)	133, 186, 338, 386, 394, 457, 590
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Ecl136II	GAGCTC	1 cut(s)	610
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	262, 612
Eco47I	GGWCC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	610
Eco57I	CTGAAG	1 cut(s)	542
Eco88I	CYCGRG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	610
EcoO65I	GGTNACC	1 cut(s)	515
EcoRII	CCWGG	2 cut(s)	92, 462
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	262, 612
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	3 cut(s)	73, 310, 554
FaiI	YATR	6 cut(s)	71, 144, 210, 216, 308, 552
FatI	CATG	3 cut(s)	69, 306, 550
Fnu4HI	GCNGC	3 cut(s)	51, 294, 633
FokI	GGATG	2 cut(s)	421, 610
FriOI	GRGCYC	2 cut(s)	262, 612
Fsp4HI	GCNGC	3 cut(s)	51, 294, 633
FspBI	CTAG	3 cut(s)	315, 366, 640
GluI	GCNGC	3 cut(s)	51, 294, 633
GsuI	CTGGAG	5 cut(s)	93, 179, 282, 444, 579
HapII	CCGG	1 cut(s)	627
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	3 cut(s)	73, 310, 554
HinfI	GANTC	3 cut(s)	100, 123, 178
HpaII	CCGG	1 cut(s)	627
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	3 cut(s)	363, 496, 548
Hpy188I	TCNGA	1 cut(s)	535
Hpy188III	TCNNGA	6 cut(s)	110, 182, 247, 263, 605, 627
Hpy8I	GTNNAC	3 cut(s)	363, 496, 548
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4IV	ACGT	2 cut(s)	252, 507
HpyCH4V	TGCA	3 cut(s)	442, 496, 548
HpyF3I	CTNAG	2 cut(s)	571, 611
HpySE526I	ACGT	2 cut(s)	252, 507
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	3 cut(s)	73, 310, 554
Kpn2I	TCCGGA	1 cut(s)	626
Kzo9I	GATC	7 cut(s)	133, 186, 338, 386, 394, 457, 590
LmnI	GCTCC	2 cut(s)	301, 629
Lsp1109I	GCAGC	3 cut(s)	62, 280, 619
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	3 cut(s)	315, 366, 640
MaeII	ACGT	2 cut(s)	252, 507
MaeIII	GTNAC	2 cut(s)	515, 578
MalI	GATC	7 cut(s)	135, 188, 340, 388, 396, 459, 592
MboI	GATC	7 cut(s)	133, 186, 338, 386, 394, 457, 590
MboII	GAAGA	2 cut(s)	470, 535
MflI	RGATCY	5 cut(s)	133, 186, 338, 386, 590
MhlI	GDGCHC	6 cut(s)	164, 262, 306, 498, 550, 612
MluCI	AATT	1 cut(s)	352
MroI	TCCGGA	1 cut(s)	626
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	53, 199
MspI	CCGG	1 cut(s)	627
MspR9I	CCNGG	2 cut(s)	94, 464
MvaI	CCWGG	2 cut(s)	94, 464
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	7 cut(s)	133, 186, 338, 386, 394, 457, 590
NlaIII	CATG	3 cut(s)	73, 310, 554
NlaIV	GGNNCC	5 cut(s)	6, 245, 340, 361, 409
PaeR7I	CTCGAG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	504
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	100, 123, 178
PkrI	GCNGC	3 cut(s)	52, 295, 634
Psp124BI	GAGCTC	1 cut(s)	612
Psp6I	CCWGG	2 cut(s)	92, 462
PspEI	GGTNACC	1 cut(s)	515
PspGI	CCWGG	2 cut(s)	92, 462
PspN4I	GGNNCC	5 cut(s)	6, 245, 340, 361, 409
PspPI	GGNCC	1 cut(s)	360
PsuI	RGATCY	5 cut(s)	133, 186, 338, 386, 590
PvuII	CAGCTG	2 cut(s)	53, 199
RsaI	GTAC	2 cut(s)	91, 328
RsaNI	GTAC	2 cut(s)	90, 327
SacI	GAGCTC	1 cut(s)	612
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	51, 294, 633
Sau3AI	GATC	7 cut(s)	133, 186, 338, 386, 394, 457, 590
Sau96I	GGNCC	1 cut(s)	360
ScrFI	CCNGG	2 cut(s)	94, 464
SduI	GDGCHC	6 cut(s)	164, 262, 306, 498, 550, 612
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	360
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	3 cut(s)	128, 261, 605
SmoI	CTYRAG	3 cut(s)	128, 261, 605
SpeI	ACTAGT	2 cut(s)	314, 365
Sse9I	AATT	1 cut(s)	352
SsiI	CCGC	1 cut(s)	576
SspMI	CTAG	3 cut(s)	315, 366, 640
SstI	GAGCTC	1 cut(s)	612
StyD4I	CCNGG	2 cut(s)	92, 462
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	587
TaiI	ACGT	2 cut(s)	255, 510
TaqI	TCGA	1 cut(s)	262
TasI	AATT	1 cut(s)	352
TfiI	GAWTC	3 cut(s)	100, 123, 178
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	306
TseI	GCWGC	3 cut(s)	50, 293, 632
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	306
VneI	GTGCAC	2 cut(s)	494, 546
VpaK11BI	GGWCC	1 cut(s)	360
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	3 cut(s)	315, 366, 640
ZraI	GACGTC	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.