Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTATGGTGATAGGTATCTCCTAGTCCTAGGACCATTGTTAATTGCCTTTTGGTTATTGAGAAAAAGCAAGAAAGATAGGGATAACCATGTAGTAAAAACGAAGGGAATCTGTTATGCTTGCTTTTGCTGCAAATTAAAGAGGTCTAATGAAGTCCTTCTGATCATTAAGGTTTGGGCTGATATATATGCCAAAAACCATTACAAATCACTCGATCACCGAAGCTTTTATTTCAAGCAACAAGATTCAAAGAACTTGAGCAGCAAATATTTGGTGGCTGAGATCAAGGAACTAAAAGAGAAAAAACAGATAGAGGACGATATTCTTCTGGCTTTGAATAAGGCTATGAGACTTTATACTACCTTTTTGGAGCCAATGTTGGGTATTCCTTCTCGGCCTCATGGTTCAGAGGATGATGAAGATGTGGACAAAGCTAGGAAGGGGCCTATGAATTGTACTGTATCAAGCAATGGAGAAAGTGATGGAAGTCCTGGTGGTGAGACTACCATGGTAAATTTTAAGCAGCCTAAATCTGGGGGTAATGAAGATGAAAATGCTTTAGCAGATGGGGCAAGTTCTAGGAATAGTTTGGCTAATGGGGATACCTTAGCCAAAGAAGATGGCAGTTGCGACGCAGATAATGCCTGCAGGGATGATTCAATCTGTAATAACATTTGGGTAGAGAAAGAAGTCATAGAACAAAAGAATATGAGTATCCCTGATAAAATGCATGGGTCAAGTAAACCGGTTGACTCCATTGATCGAGTAGGCAATTCCAATGCATCATTTGCAGTTGGAGGAGAAAATAACCATGGAAGAATCAGCTTGGAAGTGACATCAGGGTCTGTTGCAACTACCTCAAGACCCTACGACTCCATTAGTGAAAATGAGCAGTCAAAGAAAACTAATACTGACACTGCTGTTCCTTCATCAGAGGGTGGTGATATTGTAAAACCTGCTTCATTTGGTAATGGGGTGATTACAGAAAGCACTAAAGTCAACAGTCGTCATGAAGAATCTGTTGGGCCCTCTAAAATTGAGAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

349

Amino Acids

38.34

Weight (kDa)

5.78

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	841
Acc36I	ACCTGC	1 cut(s)	964
AcsI	RAATTY	1 cut(s)	514
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	2 cut(s)	380, 533
AgeI	ACCGGT	1 cut(s)	745
AgsI	TTSAA	4 cut(s)	235, 249, 337, 660
AjnI	CCWGG	1 cut(s)	490
AjuI	GAANNNNNNNTTGG	2 cut(s)	1005, 1037
AluBI	AGCT	3 cut(s)	225, 434, 825
AluI	AGCT	3 cut(s)	225, 434, 825
Alw26I	GTCTC	2 cut(s)	343, 494
AlwNI	CAGNNNCTG	1 cut(s)	845
AoxI	GGCC	3 cut(s)	395, 443, 1025
ApaI	GGGCCC	1 cut(s)	1029
ApeKI	GCWGC	3 cut(s)	129, 261, 523
ApoI	RAATTY	1 cut(s)	514
AsiGI	ACCGGT	1 cut(s)	745
Asp700I	GAANNNNTTC	1 cut(s)	156
AspA2I	CCTAGG	1 cut(s)	28
AspS9I	GGNCC	4 cut(s)	32, 443, 1025, 1026
AsuHPI	GGTGA	5 cut(s)	20, 209, 509, 953, 988
AvaII	GGWCC	1 cut(s)	32
AvrII	CCTAGG	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	1029
BanII	GRGCYC	1 cut(s)	1029
BbvI	GCAGC	3 cut(s)	116, 273, 535
BccI	CCATC	3 cut(s)	476, 560, 614
BciT130I	CCWGG	1 cut(s)	492
BciVI	GTATCC	2 cut(s)	595, 725
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	343, 494
BfaI	CTAG	4 cut(s)	23, 29, 435, 579
BfmI	CTRYAG	1 cut(s)	646
BfuAI	ACCTGC	1 cut(s)	964
BfuI	GTATCC	2 cut(s)	595, 725
BisI	GCNGC	3 cut(s)	130, 262, 524
BlnI	CCTAGG	1 cut(s)	28
BlsI	GCNGC	3 cut(s)	131, 263, 525
Bme1390I	CCNGG	1 cut(s)	492
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	4 cut(s)	32, 443, 1025, 1026
BmiI	GGNNCC	3 cut(s)	372, 444, 1027
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	1 cut(s)	791
Bpu10I	CCTNAGC	1 cut(s)	607
BpuEI	CTTGAG	2 cut(s)	277, 844
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	3 cut(s)	28, 507, 811
BsaWI	WCCGGW	1 cut(s)	745
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 533
Bse118I	RCCGGY	1 cut(s)	745
Bse3DI	GCAATG	1 cut(s)	475
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	3 cut(s)	28, 507, 811
BseGI	GGATG	2 cut(s)	418, 658
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	2 cut(s)	380, 533
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	813
BseSI	GKGCMC	1 cut(s)	1029
BseXI	GCAGC	3 cut(s)	116, 273, 535
BshFI	GGCC	3 cut(s)	397, 445, 1027
BshTI	ACCGGT	1 cut(s)	745
BsiSI	CCGG	1 cut(s)	746
BslI	CCNNNNNNNGG	2 cut(s)	380, 533
BsmAI	GTCTC	2 cut(s)	343, 494
BsnI	GGCC	3 cut(s)	397, 445, 1027
Bsp120I	GGGCCC	1 cut(s)	1025
Bsp1286I	GDGCHC	1 cut(s)	1029
Bsp143I	GATC	4 cut(s)	162, 214, 282, 760
Bsp19I	CCATGG	2 cut(s)	507, 811
BspANI	GGCC	3 cut(s)	397, 445, 1027
BspCNI	CTCAG	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	1009
BspLI	GGNNCC	3 cut(s)	372, 444, 1027
BspMAI	CTGCAG	1 cut(s)	650
BspMI	ACCTGC	1 cut(s)	964
BsrDI	GCAATG	1 cut(s)	475
BsrFI	RCCGGY	1 cut(s)	745
BssAI	RCCGGY	1 cut(s)	745
BssECI	CCNNGG	3 cut(s)	28, 507, 811
BssMI	GATC	4 cut(s)	162, 214, 282, 760
BssT1I	CCWWGG	3 cut(s)	28, 507, 811
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	460, 1004
BstAPI	GCANNNNNTGC	2 cut(s)	641, 788
BstC8I	GCNNGC	2 cut(s)	121, 646
BstDEI	CTNAG	2 cut(s)	279, 607
BstDSI	CCRYGG	2 cut(s)	507, 811
BstF5I	GGATG	2 cut(s)	418, 658
BstKTI	GATC	4 cut(s)	165, 217, 285, 763
BstMAI	GTCTC	2 cut(s)	343, 494
BstMBI	GATC	4 cut(s)	162, 214, 282, 760
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 569, 641, 788
BstNI	CCWGG	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	490
BstSFI	CTRYAG	1 cut(s)	646
BstSLI	GKGCMC	1 cut(s)	1029
BstV1I	GCAGC	3 cut(s)	116, 273, 535
BsuI	GTATCC	2 cut(s)	595, 725
BsuRI	GGCC	3 cut(s)	397, 445, 1027
BtgI	CCRYGG	2 cut(s)	507, 811
BtsCI	GGATG	2 cut(s)	418, 658
BtsI	GCAGTG	1 cut(s)	915
BtsIMutI	CAGTG	1 cut(s)	915
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	2 cut(s)	121, 646
CaiI	CAGNNNCTG	1 cut(s)	845
CciI	TCATGA	1 cut(s)	1009
Cfr10I	RCCGGY	1 cut(s)	745
Cfr13I	GGNCC	4 cut(s)	32, 443, 1025, 1026
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	1 cut(s)	456
CspAI	ACCGGT	1 cut(s)	745
CviAII	CATG	6 cut(s)	89, 401, 508, 731, 812, 1010
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	2 cut(s)	279, 607
DpnI	GATC	4 cut(s)	164, 216, 284, 762
DpnII	GATC	4 cut(s)	162, 214, 282, 760
DrdI	GACNNNNNNGTC	1 cut(s)	841
DseDI	GACNNNNNNGTC	1 cut(s)	841
Eco130I	CCWWGG	3 cut(s)	28, 507, 811
Eco24I	GRGCYC	1 cut(s)	1029
Eco47I	GGWCC	1 cut(s)	32
EcoO109I	RGGNCCY	2 cut(s)	443, 1026
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	3 cut(s)	28, 507, 811
EcoT22I	ATGCAT	2 cut(s)	732, 784
EcoT38I	GRGCYC	1 cut(s)	1029
ErhI	CCWWGG	3 cut(s)	28, 507, 811
FaeI	CATG	6 cut(s)	92, 404, 511, 734, 815, 1013
FatI	CATG	6 cut(s)	88, 400, 507, 730, 811, 1009
FbaI	TGATCA	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	130, 262, 524
FokI	GGATG	2 cut(s)	425, 665
FriOI	GRGCYC	1 cut(s)	1029
Fsp4HI	GCNGC	3 cut(s)	130, 262, 524
FspBI	CTAG	4 cut(s)	23, 29, 435, 579
GluI	GCNGC	3 cut(s)	130, 262, 524
HaeIII	GGCC	3 cut(s)	397, 445, 1027
HapII	CCGG	1 cut(s)	746
HgaI	GACGC	1 cut(s)	641
Hin1II	CATG	6 cut(s)	92, 404, 511, 734, 815, 1013
HincII	GTYRAC	2 cut(s)	751, 1000
HindII	GTYRAC	2 cut(s)	751, 1000
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	7 cut(s)	108, 245, 656, 752, 819, 872, 1016
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	5 cut(s)	20, 209, 509, 953, 988
Hpy166II	GTNNAC	4 cut(s)	427, 743, 751, 1000
Hpy188I	TCNGA	3 cut(s)	162, 409, 934
Hpy188III	TCNNGA	2 cut(s)	861, 1010
Hpy8I	GTNNAC	4 cut(s)	427, 743, 751, 1000
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	6 cut(s)	97, 167, 399, 433, 936, 1036
HpyCH4III	ACNGT	2 cut(s)	460, 1004
HpyCH4V	TGCA	6 cut(s)	132, 648, 730, 782, 791, 851
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 569, 641, 788
HpyF3I	CTNAG	2 cut(s)	279, 607
Hsp92II	CATG	6 cut(s)	92, 404, 511, 734, 815, 1013
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	4 cut(s)	162, 214, 282, 760
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	3 cut(s)	116, 273, 535
LweI	GCATC	1 cut(s)	791
MaeI	CTAG	4 cut(s)	23, 29, 435, 579
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	4 cut(s)	164, 216, 284, 762
MboI	GATC	4 cut(s)	162, 214, 282, 760
MboII	GAAGA	6 cut(s)	317, 431, 557, 629, 828, 1025
MhlI	GDGCHC	1 cut(s)	1029
MluCI	AATT	6 cut(s)	42, 134, 451, 514, 772, 1035
MlyI	GAGTC	2 cut(s)	746, 866
MmeI	TCCRAC	1 cut(s)	775
MnlI	CCTC	8 cut(s)	135, 307, 403, 408, 791, 868, 928, 1039
Mph1103I	ATGCAT	2 cut(s)	732, 784
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	4 cut(s)	41, 137, 168, 519
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	4 cut(s)	129, 569, 641, 788
NcoI	CCATGG	2 cut(s)	507, 811
NdeII	GATC	4 cut(s)	162, 214, 282, 760
NlaIII	CATG	6 cut(s)	92, 404, 511, 734, 815, 1013
NlaIV	GGNNCC	3 cut(s)	372, 444, 1027
NmeAIII	GCCGAG	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	832
NsiI	ATGCAT	2 cut(s)	732, 784
PagI	TCATGA	1 cut(s)	1009
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	5 cut(s)	108, 245, 656, 819, 1016
PinAI	ACCGGT	1 cut(s)	745
PkrI	GCNGC	3 cut(s)	131, 263, 525
PleI	GAGTC	2 cut(s)	746, 866
PpsI	GAGTC	2 cut(s)	746, 866
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	3 cut(s)	372, 444, 1027
PspOMI	GGGCCC	1 cut(s)	1025
PspPI	GGNCC	4 cut(s)	32, 443, 1025, 1026
PstI	CTGCAG	1 cut(s)	650
PstNI	CAGNNNCTG	1 cut(s)	845
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
SaqAI	TTAA	4 cut(s)	41, 137, 168, 519
SatI	GCNGC	3 cut(s)	130, 262, 524
Sau3AI	GATC	4 cut(s)	162, 214, 282, 760
Sau96I	GGNCC	4 cut(s)	32, 443, 1025, 1026
SbfI	CCTGCAGG	1 cut(s)	650
SchI	GAGTC	2 cut(s)	746, 866
ScrFI	CCNGG	1 cut(s)	492
SdaI	CCTGCAGG	1 cut(s)	650
SduI	GDGCHC	1 cut(s)	1029
SfaNI	GCATC	1 cut(s)	791
SfcI	CTRYAG	1 cut(s)	646
SinI	GGWCC	1 cut(s)	32
SmlI	CTYRAG	2 cut(s)	256, 859
SmoI	CTYRAG	2 cut(s)	256, 859
Sse8387I	CCTGCAGG	1 cut(s)	650
Sse9I	AATT	6 cut(s)	42, 134, 451, 514, 772, 1035
SspI	AATATT	1 cut(s)	269
SspMI	CTAG	4 cut(s)	23, 29, 435, 579
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	3 cut(s)	28, 507, 811
TaaI	ACNGT	2 cut(s)	460, 1004
TaqI	TCGA	2 cut(s)	213, 763
TasI	AATT	6 cut(s)	42, 134, 451, 514, 772, 1035
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	5 cut(s)	108, 245, 656, 819, 1016
Tru1I	TTAA	4 cut(s)	41, 137, 168, 519
Tru9I	TTAA	4 cut(s)	41, 137, 168, 519
TscAI	CASTG	1 cut(s)	922
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	3 cut(s)	129, 261, 523
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	8 cut(s)	165, 432, 464, 558, 564, 918, 951, 1026
TspRI	CASTG	1 cut(s)	922
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	1 cut(s)	514
XmaJI	CCTAGG	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	4 cut(s)	23, 29, 435, 579
Zsp2I	ATGCAT	2 cut(s)	732, 784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.