Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Reverse (-)

1963088 .. 1973851

Gene Structure 10764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG011500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGGTCGAAATCCGTATCGGAATGCAATCAAACGTATCTTCAATGACCTCAGATTTGGTGGCTGAGATCAAGGAACTAAAAGAGAAAAAACAGATAGAGGACGATATTCTTCTGGCTGTTGCTGCTGGAAACAGGCAATCTATAGTTCCACATCTGGAGTATGAATACCTTGATATCAGCATTCATGAGGACTTGTATAAACTTGTCGAATATTCATGTGAAGAGCTTAGCTCGACGAAAGAACAGTTGAATAAGGCTATGAGACTTTATACTACCTTTTTGGAGCCAATGTTGGGTATTCCTTCTCGGCCTCATGGTTCAGAGGATGATGAAGATGTGGACAAAGCTAGGAAGGGGCCTATGAATTGTACTGTATCAAGCAATGGAGAAAGTGATGGAAGTCCTGGTGGTGAGACTACCATGGTAAATTTTAAGCAGCCTAAATCTGGGGCTAATGAAGATGAAAATGCTTTAGCAGATGGGGCAAGTTCTAGGAATAGTTTGGCTAATGGGGATACCTTAGCCAAAGAAGATGGCAGTTGCGACGCAGATAATGCCTGCAGGGATGATTCAATCTGTAATAACATTTGGGTAGAGAAAGAAGTCATAGAACAAAAGAATATGAGTATCCCTGATAAAATGCATGGGTCAAGTAAACCGGTTGACTCCATTGATCGAGTAGGCAATTCCAATGCATCATTTGCAGTTGGAGGAGAAAATAACCATGGAAGAATCAGCTTGGAAGTGACATCAGGGTCTGTTGCAACTACCTCAAGACCCTACGACTCCATTAGTGAAAATGAGCAGTCAAAGAAAACTAATACTGACACTGCTGTTCCTTCATCAGAGGGTGGTGATATTGTAAAACCTGCTTCATTTGGTAATGGGGTGATTACAGAAAGCACTAAAGATAACTTCGTTGTCTCTGGAGACGCTGGGGTGCTGGCTTTGCCTAAGGAAAACCATGGTGTTGAAAGGCAATATCAATCTGGAAACGGGGAAGAAATTTGCTCTCAGGATGCTGGGGAAAATGATGCAGACGCTGATGATGAAAACAGTGAAAATGTTTCTGAGGCAGGTGAAGATGCCTCTGGCAGTGAGACAGCTGGTGATGAGTGTTCCCGAGAAGAGCATGGAGAGGAGGAGGATGCTGAACATGATGACGTTGATGGTAAGGCTGAGAGTGAAGGAGAGGCTGAAGGGATGGCTGATGGGCACCTTGTTGGAGATGGCTCCTCTTGCAAAGCATTATCGGCACCTTTAGTTGACGAAAAGAAAGACTCTCGTGTTTTTTATGGAAATGATAACTTCTATGTGCTCTATAGGCTTCATCAAATTTTATACGAAAGGATTTTATCTGCAAAATCAAATTCAGTAGGAGCAGAAACTAAGTGGAGAACTTCCAAGGATGGCAACCCTCCAGATCTTTATGGCAGGTTTATGAGTGCACTGTACAACTTGCTTGATGGATCTGCAGATAATGCAAAATTTGAGGATGAGTGCCGAGCTATTATTGGAAATCAGTCGTACATCTTATTCACATTGGACAAGTTAATATATAAATTTGTTAAACAGCTTCAAACGGTTGCAACTGATGAGATGGACAATAAGCTTCTTCAGTTATATGAATATGAAAAGTCTCGGAAAAAAGGGAAGCTAATTGATTCTGTCTATTTTGAAAACACACGTGTCCTTGTTCACGAGAACATTTACAGATTGGAATTCTTCTCTGCACCCTCCCGGCTGTCCATCCAGCTGATGGACAGCATTTTACACTGTATTAGAGGAAACAAGCGCAAATATGCAGGGCAAGATGAATCCACTGCGTTTTCCAATGCCATGGAGGATGTTCAATTAGTCAATGGGTTGGAGTGTAAAATAGCTTGCAACTCATCCAAGATCTCTTATGTTCTCGACACAGAAGATTACTTCTTCCGTATGAGAAGGAAAAGGAGAAAGAGTCCAGATCACCATATTGTGATCAGACGAGGAATTCCTTTGAGATTGGACGCTCAAGAAGCCATAGTTGCAGTGAAACAAAAAAGACTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

684

Amino Acids

75.48

Weight (kDa)

4.73

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sin3a_C	PF16879	431 - 589	1.1e-32	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1067
AasI	GACNNNNNNGTC	1 cut(s)	754
Acc36I	ACCTGC	3 cut(s)	877, 1067, 1425
AccB1I	GGYRCC	2 cut(s)	1215, 1255
AccB7I	CCANNNNNTGG	1 cut(s)	1759
AclWI	GGATC	1 cut(s)	1477
AcsI	RAATTY	8 cut(s)	427, 1005, 1335, 1369, 1487, 1562, 1721, 1992
AcuI	CTGAAG	2 cut(s)	1218, 1601
AcvI	CACGTG	1 cut(s)	1688
AfaI	GTAC	3 cut(s)	370, 1454, 1529
AfiI	CCNNNNNNNGG	3 cut(s)	293, 446, 1759
AflIII	ACRYGT	2 cut(s)	1685, 1687
AgeI	ACCGGT	1 cut(s)	658
AgsI	TTSAA	7 cut(s)	42, 250, 573, 974, 1580, 1679, 1853
AjnI	CCWGG	1 cut(s)	403
Alw21I	GWGCWC	2 cut(s)	1320, 1450
Alw26I	GTCTC	6 cut(s)	256, 407, 924, 928, 1094, 1644
Alw44I	GTGCAC	1 cut(s)	1446
AlwI	GGATC	1 cut(s)	1477
AlwNI	CAGNNNCTG	2 cut(s)	758, 1043
Ama87I	CYCGRG	1 cut(s)	1122
AoxI	GGCC	2 cut(s)	308, 356
ApaLI	GTGCAC	1 cut(s)	1446
ApeKI	GCWGC	2 cut(s)	122, 436
ApoI	RAATTY	8 cut(s)	427, 1005, 1335, 1369, 1487, 1562, 1721, 1992
ArsI	GACNNNNNNTTYG	2 cut(s)	37, 69
AsiGI	ACCGGT	1 cut(s)	658
AspLEI	GCGC	1 cut(s)	1797
AspS9I	GGNCC	1 cut(s)	356
AsuC2I	CCSGG	1 cut(s)	1741
AsuHPI	GGTGA	6 cut(s)	422, 866, 901, 1091, 1121, 1961
AvaI	CYCGRG	1 cut(s)	1122
AxyI	CCTNAGG	1 cut(s)	954
BaeGI	GKGCMC	2 cut(s)	1218, 1450
BanI	GGYRCC	2 cut(s)	1215, 1255
BauI	CACGAG	2 cut(s)	1284, 1700
BbrPI	CACGTG	1 cut(s)	1688
Bbv12I	GWGCWC	2 cut(s)	1320, 1450
BbvI	GCAGC	2 cut(s)	109, 448
BciT130I	CCWGG	1 cut(s)	405
BciVI	GTATCC	2 cut(s)	508, 638
BclI	TGATCA	1 cut(s)	1980
BcnI	CCSGG	1 cut(s)	1741
BcoDI	GTCTC	6 cut(s)	256, 407, 924, 928, 1094, 1644
BfaI	CTAG	2 cut(s)	348, 492
BfmI	CTRYAG	4 cut(s)	141, 559, 1321, 1473
BfuAI	ACCTGC	3 cut(s)	877, 1067, 1425
BfuI	GTATCC	2 cut(s)	508, 638
BglII	AGATCT	2 cut(s)	1423, 1899
BisI	GCNGC	2 cut(s)	123, 437
BlpI	GCTNAGC	1 cut(s)	227
BlsI	GCNGC	2 cut(s)	124, 438
Bme1390I	CCNGG	2 cut(s)	405, 1741
BmeT110I	CYCGRG	1 cut(s)	1122
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	5 cut(s)	285, 357, 1217, 1234, 1257
BmrFI	CCNGG	2 cut(s)	405, 1741
BmsI	GCATC	5 cut(s)	704, 1009, 1024, 1075, 1138
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpmI	CTGGAG	3 cut(s)	176, 948, 1404
Bpu10I	CCTNAGC	1 cut(s)	520
Bpu1102I	GCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	2 cut(s)	757, 1998
BpuMI	CCSGG	1 cut(s)	1741
BsaAI	YACGTR	1 cut(s)	1688
BsaJI	CCNNGG	5 cut(s)	420, 724, 964, 1404, 1839
BsaWI	WCCGGW	1 cut(s)	658
BsaXI	ACNNNNNCTCC	4 cut(s)	275, 305, 1945, 1975
Bsc4I	CCNNNNNNNGG	3 cut(s)	293, 446, 1759
Bse118I	RCCGGY	1 cut(s)	658
Bse21I	CCTNAGG	1 cut(s)	954
Bse3DI	GCAATG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	5 cut(s)	420, 724, 964, 1404, 1839
BseLI	CCNNNNNNNGG	3 cut(s)	293, 446, 1759
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	5 cut(s)	54, 63, 1028, 1062, 1170
BseRI	GAGGAG	4 cut(s)	726, 1154, 1157, 1225
BseSI	GKGCMC	2 cut(s)	1218, 1450
BseXI	GCAGC	2 cut(s)	109, 448
BseYI	CCCAGC	2 cut(s)	935, 1022
BsgI	GTGCAG	1 cut(s)	1716
BshFI	GGCC	2 cut(s)	310, 358
BshNI	GGYRCC	2 cut(s)	1215, 1255
BshTI	ACCGGT	1 cut(s)	658
BsiHKAI	GWGCWC	2 cut(s)	1320, 1450
BsiHKCI	CYCGRG	1 cut(s)	1122
BsiSI	CCGG	2 cut(s)	659, 1741
BslI	CCNNNNNNNGG	3 cut(s)	293, 446, 1759
BsmAI	GTCTC	6 cut(s)	256, 407, 924, 928, 1094, 1644
BsmBI	CGTCTC	1 cut(s)	924
BsmI	GAATGC	2 cut(s)	27, 180
BsnI	GGCC	2 cut(s)	310, 358
BsoBI	CYCGRG	1 cut(s)	1122
Bsp1286I	GDGCHC	3 cut(s)	1218, 1320, 1450
Bsp1407I	TGTACA	1 cut(s)	1452
Bsp143I	GATC	7 cut(s)	66, 673, 1423, 1469, 1899, 1966, 1980
Bsp1720I	GCTNAGC	1 cut(s)	227
Bsp19I	CCATGG	4 cut(s)	420, 724, 964, 1839
BspANI	GGCC	2 cut(s)	310, 358
BspCNI	CTCAG	5 cut(s)	55, 62, 1027, 1063, 1171
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	5 cut(s)	285, 357, 1217, 1234, 1257
BspMAI	CTGCAG	2 cut(s)	563, 1477
BspMI	ACCTGC	3 cut(s)	877, 1067, 1425
BspPI	GGATC	1 cut(s)	1477
BspQI	GCTCTTC	2 cut(s)	216, 1122
BspT107I	GGYRCC	2 cut(s)	1215, 1255
BsrDI	GCAATG	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	658
BsrGI	TGTACA	1 cut(s)	1452
BssAI	RCCGGY	1 cut(s)	658
BssECI	CCNNGG	5 cut(s)	420, 724, 964, 1404, 1839
BssMI	GATC	7 cut(s)	66, 673, 1423, 1469, 1899, 1966, 1980
BssSI	CACGAG	2 cut(s)	1284, 1700
BssT1I	CCWWGG	5 cut(s)	420, 724, 964, 1404, 1839
Bst2BI	CACGAG	2 cut(s)	1284, 1700
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	6 cut(s)	246, 373, 1058, 1452, 1585, 1778
Bst6I	CTCTTC	2 cut(s)	216, 1122
BstAPI	GCANNNNNTGC	3 cut(s)	554, 701, 1481
BstAUI	TGTACA	1 cut(s)	1452
BstBAI	YACGTR	1 cut(s)	1688
BstC8I	GCNNGC	3 cut(s)	559, 945, 1885
BstDEI	CTNAG	9 cut(s)	49, 63, 227, 520, 954, 1014, 1071, 1179, 1389
BstDSI	CCRYGG	4 cut(s)	420, 724, 964, 1839
BstHHI	GCGC	1 cut(s)	1797
BstKTI	GATC	7 cut(s)	69, 676, 1426, 1472, 1902, 1969, 1983
BstMAI	GTCTC	6 cut(s)	256, 407, 924, 928, 1094, 1644
BstMBI	GATC	7 cut(s)	66, 673, 1423, 1469, 1899, 1966, 1980
BstNI	CCWGG	1 cut(s)	405
BstSCI	CCNGG	2 cut(s)	403, 1739
BstSFI	CTRYAG	4 cut(s)	141, 559, 1321, 1473
BstSLI	GKGCMC	2 cut(s)	1218, 1450
BstV1I	GCAGC	2 cut(s)	109, 448
BstX2I	RGATCY	3 cut(s)	1423, 1469, 1899
BstXI	CCANNNNNNTGG	1 cut(s)	1840
BstYI	RGATCY	3 cut(s)	1423, 1469, 1899
Bsu36I	CCTNAGG	1 cut(s)	954
BsuI	GTATCC	2 cut(s)	508, 638
BsuRI	GGCC	2 cut(s)	310, 358
BtgI	CCRYGG	4 cut(s)	420, 724, 964, 1839
BtsI	GCAGTG	4 cut(s)	828, 1102, 1821, 2037
BtsIMutI	CAGTG	7 cut(s)	828, 1063, 1102, 1448, 1774, 1821, 2037
BveI	ACCTGC	3 cut(s)	877, 1067, 1425
Cac8I	GCNNGC	3 cut(s)	559, 945, 1885
CaiI	CAGNNNCTG	2 cut(s)	758, 1043
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	1 cut(s)	1797
Cfr10I	RCCGGY	1 cut(s)	658
Cfr13I	GGNCC	1 cut(s)	356
CseI	GACGC	4 cut(s)	554, 941, 1049, 2018
Csp6I	GTAC	3 cut(s)	369, 1453, 1528
CspAI	ACCGGT	1 cut(s)	658
CviQI	GTAC	3 cut(s)	369, 1453, 1528
DdeI	CTNAG	9 cut(s)	49, 63, 227, 520, 954, 1014, 1071, 1179, 1389
DpnI	GATC	7 cut(s)	68, 675, 1425, 1471, 1901, 1968, 1982
DpnII	GATC	7 cut(s)	66, 673, 1423, 1469, 1899, 1966, 1980
DrdI	GACNNNNNNGTC	1 cut(s)	754
DseDI	GACNNNNNNGTC	1 cut(s)	754
Eam1104I	CTCTTC	2 cut(s)	216, 1122
EarI	CTCTTC	2 cut(s)	216, 1122
Eco130I	CCWWGG	5 cut(s)	420, 724, 964, 1404, 1839
Eco32I	GATATC	1 cut(s)	175
Eco57I	CTGAAG	2 cut(s)	1218, 1601
Eco72I	CACGTG	1 cut(s)	1688
Eco81I	CCTNAGG	1 cut(s)	954
Eco88I	CYCGRG	1 cut(s)	1122
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRI	GAATTC	2 cut(s)	1721, 1992
EcoRII	CCWGG	1 cut(s)	403
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	5 cut(s)	420, 724, 964, 1404, 1839
EcoT22I	ATGCAT	2 cut(s)	645, 697
ErhI	CCWWGG	5 cut(s)	420, 724, 964, 1404, 1839
Esp3I	CGTCTC	1 cut(s)	924
FalI	AAGNNNNNCTT	1 cut(s)	2035
FbaI	TGATCA	1 cut(s)	1980
Fnu4HI	GCNGC	2 cut(s)	123, 437
Fsp4HI	GCNGC	2 cut(s)	123, 437
FspBI	CTAG	2 cut(s)	348, 492
GlaI	GCGC	1 cut(s)	1796
GluI	GCNGC	2 cut(s)	123, 437
GsaI	CCCAGC	2 cut(s)	939, 1026
GsuI	CTGGAG	3 cut(s)	176, 948, 1404
HaeIII	GGCC	2 cut(s)	310, 358
HapII	CCGG	2 cut(s)	659, 1741
HgaI	GACGC	4 cut(s)	554, 941, 1049, 2018
HhaI	GCGC	1 cut(s)	1797
Hin6I	GCGC	1 cut(s)	1795
HinP1I	GCGC	1 cut(s)	1795
HincII	GTYRAC	2 cut(s)	664, 1267
HindII	GTYRAC	2 cut(s)	664, 1267
HindIII	AAGCTT	1 cut(s)	1610
HinfI	GANTC	8 cut(s)	569, 665, 732, 785, 1280, 1664, 1817, 1960
HpaII	CCGG	2 cut(s)	659, 1741
HphI	GGTGA	6 cut(s)	422, 866, 901, 1091, 1121, 1961
Hpy166II	GTNNAC	6 cut(s)	340, 656, 664, 1267, 1448, 1699
Hpy188I	TCNGA	7 cut(s)	20, 52, 322, 847, 1072, 1644, 1985
Hpy8I	GTNNAC	6 cut(s)	340, 656, 664, 1267, 1448, 1699
Hpy99I	CGWCG	2 cut(s)	238, 548
HpyAV	CCTTC	6 cut(s)	312, 346, 849, 1181, 1193, 1938
HpyCH4III	ACNGT	6 cut(s)	246, 373, 1058, 1452, 1585, 1778
HpyCH4IV	ACGT	3 cut(s)	33, 1164, 1687
HpyF3I	CTNAG	9 cut(s)	49, 63, 227, 520, 954, 1014, 1071, 1179, 1389
HpySE526I	ACGT	3 cut(s)	33, 1164, 1687
HspAI	GCGC	1 cut(s)	1795
Ksp22I	TGATCA	1 cut(s)	1980
Kzo9I	GATC	7 cut(s)	66, 673, 1423, 1469, 1899, 1966, 1980
LguI	GCTCTTC	2 cut(s)	216, 1122
LmnI	GCTCC	3 cut(s)	283, 1238, 1379
Lsp1109I	GCAGC	2 cut(s)	109, 448
LweI	GCATC	5 cut(s)	704, 1009, 1024, 1075, 1138
MaeI	CTAG	2 cut(s)	348, 492
MaeII	ACGT	3 cut(s)	33, 1164, 1687
MaeIII	GTNAC	1 cut(s)	745
MalI	GATC	7 cut(s)	68, 675, 1425, 1471, 1901, 1968, 1982
MboI	GATC	7 cut(s)	66, 673, 1423, 1469, 1899, 1966, 1980
MflI	RGATCY	3 cut(s)	1423, 1469, 1899
MhlI	GDGCHC	3 cut(s)	1218, 1320, 1450
MlyI	GAGTC	4 cut(s)	659, 779, 1274, 1969
MmeI	TCCRAC	3 cut(s)	688, 1204, 1848
Mph1103I	ATGCAT	2 cut(s)	645, 697
MseI	TTAA	3 cut(s)	432, 1553, 1569
MspA1I	CMGCKG	2 cut(s)	1106, 1756
MspI	CCGG	2 cut(s)	659, 1741
MspR9I	CCNGG	2 cut(s)	405, 1741
Mva1269I	GAATGC	2 cut(s)	27, 180
MvaI	CCWGG	1 cut(s)	405
NciI	CCSGG	1 cut(s)	1741
NcoI	CCATGG	4 cut(s)	420, 724, 964, 1839
NdeII	GATC	7 cut(s)	66, 673, 1423, 1469, 1899, 1966, 1980
NlaIV	GGNNCC	5 cut(s)	285, 357, 1217, 1234, 1257
NmeAIII	GCCGAG	2 cut(s)	286, 1529
NmuCI	GTSAC	1 cut(s)	745
NsiI	ATGCAT	2 cut(s)	645, 697
PagI	TCATGA	1 cut(s)	184
PaqCI	CACCTGC	1 cut(s)	1067
PciSI	GCTCTTC	2 cut(s)	216, 1122
PctI	GAATGC	2 cut(s)	27, 180
PfeI	GAWTC	4 cut(s)	569, 732, 1664, 1817
PflMI	CCANNNNNTGG	1 cut(s)	1759
PinAI	ACCGGT	1 cut(s)	658
PkrI	GCNGC	2 cut(s)	124, 438
PleI	GAGTC	4 cut(s)	659, 779, 1274, 1968
PmaCI	CACGTG	1 cut(s)	1688
PmlI	CACGTG	1 cut(s)	1688
PpsI	GAGTC	4 cut(s)	659, 779, 1274, 1968
Ppu21I	YACGTR	1 cut(s)	1688
Psp6I	CCWGG	1 cut(s)	403
PspCI	CACGTG	1 cut(s)	1688
PspFI	CCCAGC	2 cut(s)	935, 1022
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	5 cut(s)	285, 357, 1217, 1234, 1257
PspPI	GGNCC	1 cut(s)	356
PstI	CTGCAG	2 cut(s)	563, 1477
PstNI	CAGNNNCTG	2 cut(s)	758, 1043
PsuI	RGATCY	3 cut(s)	1423, 1469, 1899
PvuII	CAGCTG	2 cut(s)	1106, 1756
RsaI	GTAC	3 cut(s)	370, 1454, 1529
RsaNI	GTAC	3 cut(s)	369, 1453, 1528
SapI	GCTCTTC	2 cut(s)	216, 1122
SaqAI	TTAA	3 cut(s)	432, 1553, 1569
SatI	GCNGC	2 cut(s)	123, 437
Sau3AI	GATC	7 cut(s)	66, 673, 1423, 1469, 1899, 1966, 1980
Sau96I	GGNCC	1 cut(s)	356
SbfI	CCTGCAGG	1 cut(s)	563
SchI	GAGTC	4 cut(s)	659, 779, 1274, 1969
ScrFI	CCNGG	2 cut(s)	405, 1741
SdaI	CCTGCAGG	1 cut(s)	563
SduI	GDGCHC	3 cut(s)	1218, 1320, 1450
SfaNI	GCATC	5 cut(s)	704, 1009, 1024, 1075, 1138
SfcI	CTRYAG	4 cut(s)	141, 559, 1321, 1473
SmlI	CTYRAG	2 cut(s)	772, 2013
SmoI	CTYRAG	2 cut(s)	772, 2013
Sse8387I	CCTGCAGG	1 cut(s)	563
SspI	AATATT	1 cut(s)	212
SspMI	CTAG	2 cut(s)	348, 492
StyD4I	CCNGG	2 cut(s)	403, 1739
StyI	CCWWGG	5 cut(s)	420, 724, 964, 1404, 1839
TaaI	ACNGT	6 cut(s)	246, 373, 1058, 1452, 1585, 1778
TaiI	ACGT	3 cut(s)	36, 1167, 1690
TaqI	TCGA	5 cut(s)	6, 207, 233, 676, 1914
TatI	WGTACW	2 cut(s)	368, 1452
TfiI	GAWTC	4 cut(s)	569, 732, 1664, 1817
Tru1I	TTAA	3 cut(s)	432, 1553, 1569
Tru9I	TTAA	3 cut(s)	432, 1553, 1569
TscAI	CASTG	7 cut(s)	835, 1063, 1102, 1455, 1781, 1828, 2037
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	2 cut(s)	122, 436
Tsp45I	GTSAC	1 cut(s)	745
TspGWI	ACGGA	1 cut(s)	1925
TspRI	CASTG	7 cut(s)	835, 1063, 1102, 1455, 1781, 1828, 2037
Van91I	CCANNNNNTGG	1 cut(s)	1759
VneI	GTGCAC	1 cut(s)	1446
XapI	RAATTY	8 cut(s)	427, 1005, 1335, 1369, 1487, 1562, 1721, 1992
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1756
XspI	CTAG	2 cut(s)	348, 492
Zsp2I	ATGCAT	2 cut(s)	645, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.