Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Forward (+)

77372039 .. 77374006

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG598100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGACTCAGATTTGGTGTCATTGGGACCTCGCTCTAGTTTTTCAATGGTCTGTTGCAACTACCTCAAGACCCTACGACTCCATTATTGAAAATGAGCAGTCAAAGAAAACTAATACTGACACTGCTGTTCCTTCATCAGAGGGTGGTGATATTGTAAAACCTGCTTCATTTGGTAATGGGGTGATTACAGAAAGCACTAAAGTCAACAGTCGTCATGAAGAATCTGTTGGGCCCTCTAAAGTTGAGAAGGAAGAAGGTGGATTATCACCTATCGGTGATTATGGGGAGGATAACTTCGTTGTCTCTGGAGACGCTGGGGTGCTGGCTTTGCCTAAGGAAAACCATGGTGTTGAAAGGCAATATCAATCTGGAAACGGGGAAGAAATTTGCTCTCAGGATGCTGGGGAAAATGATGCAGACACTGATGATGAAAACAGTGAAAATGTTTCTGAGGCTGGTGAAGATGCCTCTGGCAGTGAGACAGCTGCTGATGAGTGTTCCCGAGAAGAGCATGGAGAGGAGGAGGATGCTGAACATGATGACGTTGATGGTAAGGCTGAGAGTGAAGGAGAGGCTGAAGGGATGGCTGACGGGCACCTTGTTGGAGATGGCTGTTCTTTGCAATTGCCAGAACGTTTTCTTATGTCTGTGAAGCCTCTTGCAAAGCATGTATCGGTACCTTTAGTTGACGAAAAGAAAGACTCTCGTGTTTTTTATGGAAATGATAACTTCTATGTGCTCTATAGGCTTCATCAAATCATAGTTGATAACCAGCGAAACCTGCTGAACATCGATGCCCCGAGCCCAAACATCAGTTGTGATGAGGACTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

277

Amino Acids

30.05

Weight (kDa)

4.2

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	169, 789
Acc65I	GGTACC	1 cut(s)	676
AccB1I	GGYRCC	2 cut(s)	594, 676
AclI	AACGTT	1 cut(s)	634
AcsI	RAATTY	1 cut(s)	384
AcuI	CTGAAG	1 cut(s)	597
AfaI	GTAC	1 cut(s)	678
AgsI	TTSAA	3 cut(s)	44, 89, 353
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	1 cut(s)	485
AluI	AGCT	1 cut(s)	485
Alw21I	GWGCWC	1 cut(s)	741
Alw26I	GTCTC	3 cut(s)	303, 307, 473
AlwNI	CAGNNNCTG	2 cut(s)	422, 488
Ama87I	CYCGRG	2 cut(s)	501, 799
AoxI	GGCC	1 cut(s)	230
ApaI	GGGCCC	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	384
Asp700I	GAANNNNTTC	1 cut(s)	636
Asp718I	GGTACC	1 cut(s)	676
AspS9I	GGNCC	3 cut(s)	25, 230, 231
AsuHPI	GGTGA	5 cut(s)	158, 193, 258, 287, 470
AvaI	CYCGRG	2 cut(s)	501, 799
AvaII	GGWCC	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	333
BaeGI	GKGCMC	2 cut(s)	234, 597
BanI	GGYRCC	2 cut(s)	594, 676
BanII	GRGCYC	2 cut(s)	234, 806
BauI	CACGAG	2 cut(s)	705, 829
Bbv12I	GWGCWC	1 cut(s)	741
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	3 cut(s)	542, 577, 602
BcoDI	GTCTC	3 cut(s)	303, 307, 473
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	742
BfuAI	ACCTGC	2 cut(s)	169, 789
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	2 cut(s)	501, 799
BmgT120I	GGNCC	3 cut(s)	25, 230, 231
BmiI	GGNNCC	4 cut(s)	26, 232, 596, 678
BmsI	GCATC	5 cut(s)	388, 403, 454, 517, 784
BpmI	CTGGAG	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	792
BsaJI	CCNNGG	1 cut(s)	343
Bse21I	CCTNAGG	1 cut(s)	333
BseCI	ATCGAT	1 cut(s)	792
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	3 cut(s)	403, 532, 588
BseMII	CTCAG	4 cut(s)	20, 407, 441, 549
BseRI	GAGGAG	2 cut(s)	533, 536
BseSI	GKGCMC	2 cut(s)	234, 597
BseXI	GCAGC	1 cut(s)	472
BseYI	CCCAGC	2 cut(s)	314, 401
BshFI	GGCC	1 cut(s)	232
BshNI	GGYRCC	2 cut(s)	594, 676
BshVI	ATCGAT	1 cut(s)	792
BsiHKAI	GWGCWC	1 cut(s)	741
BsiHKCI	CYCGRG	2 cut(s)	501, 799
BslFI	GGGAC	1 cut(s)	38
BsmAI	GTCTC	3 cut(s)	303, 307, 473
BsmBI	CGTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	232
BsoBI	CYCGRG	2 cut(s)	501, 799
Bsp120I	GGGCCC	1 cut(s)	230
Bsp1286I	GDGCHC	4 cut(s)	234, 597, 741, 806
Bsp19I	CCATGG	1 cut(s)	343
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	4 cut(s)	19, 406, 442, 550
BspDI	ATCGAT	1 cut(s)	792
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	4 cut(s)	26, 232, 596, 678
BspMI	ACCTGC	2 cut(s)	169, 789
BspQI	GCTCTTC	1 cut(s)	501
BspT107I	GGYRCC	2 cut(s)	594, 676
BssECI	CCNNGG	1 cut(s)	343
BssSI	CACGAG	2 cut(s)	705, 829
BssT1I	CCWWGG	1 cut(s)	343
Bst2BI	CACGAG	2 cut(s)	705, 829
Bst4CI	ACNGT	2 cut(s)	209, 437
Bst6I	CTCTTC	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	5 cut(s)	6, 333, 393, 450, 558
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	3 cut(s)	403, 532, 588
BstMAI	GTCTC	3 cut(s)	303, 307, 473
BstMWI	GCNNNNNNNGC	3 cut(s)	328, 745, 781
BstNSI	RCATGY	1 cut(s)	671
BstSFI	CTRYAG	1 cut(s)	742
BstSLI	GKGCMC	2 cut(s)	234, 597
BstV1I	GCAGC	1 cut(s)	472
Bsu15I	ATCGAT	1 cut(s)	792
Bsu36I	CCTNAGG	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	232
BsuTUI	ATCGAT	1 cut(s)	792
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	3 cut(s)	403, 532, 588
BtsI	GCAGTG	2 cut(s)	120, 481
BtsIMutI	CAGTG	4 cut(s)	120, 420, 442, 481
BveI	ACCTGC	2 cut(s)	169, 789
Cac8I	GCNNGC	1 cut(s)	324
CaiI	CAGNNNCTG	2 cut(s)	422, 488
CciI	TCATGA	1 cut(s)	214
Cfr13I	GGNCC	3 cut(s)	25, 230, 231
ClaI	ATCGAT	1 cut(s)	792
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	677
CviAII	CATG	5 cut(s)	215, 344, 512, 536, 668
CviQI	GTAC	1 cut(s)	677
DdeI	CTNAG	5 cut(s)	6, 333, 393, 450, 558
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco130I	CCWWGG	1 cut(s)	343
Eco24I	GRGCYC	2 cut(s)	234, 806
Eco47I	GGWCC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	597
Eco81I	CCTNAGG	1 cut(s)	333
Eco88I	CYCGRG	2 cut(s)	501, 799
EcoO109I	RGGNCCY	2 cut(s)	25, 231
EcoT14I	CCWWGG	1 cut(s)	343
EcoT38I	GRGCYC	2 cut(s)	234, 806
ErhI	CCWWGG	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	5 cut(s)	218, 347, 515, 539, 671
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	5 cut(s)	214, 343, 511, 535, 667
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	3 cut(s)	410, 539, 595
FriOI	GRGCYC	2 cut(s)	234, 806
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	1 cut(s)	486
GsaI	CCCAGC	2 cut(s)	318, 405
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	232
HgaI	GACGC	1 cut(s)	320
Hin1II	CATG	5 cut(s)	218, 347, 515, 539, 671
HincII	GTYRAC	2 cut(s)	205, 688
HindII	GTYRAC	2 cut(s)	205, 688
HinfI	GANTC	5 cut(s)	4, 77, 221, 701, 827
HphI	GGTGA	5 cut(s)	158, 193, 258, 287, 470
Hpy166II	GTNNAC	2 cut(s)	205, 688
Hpy188I	TCNGA	3 cut(s)	9, 139, 451
Hpy188III	TCNNGA	7 cut(s)	66, 215, 306, 369, 395, 501, 831
Hpy8I	GTNNAC	2 cut(s)	205, 688
HpyAV	CCTTC	5 cut(s)	141, 241, 248, 560, 572
HpyCH4III	ACNGT	2 cut(s)	209, 437
HpyCH4IV	ACGT	2 cut(s)	543, 634
HpyCH4V	TGCA	4 cut(s)	56, 416, 622, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	328, 745, 781
HpyF3I	CTNAG	5 cut(s)	6, 333, 393, 450, 558
HpySE526I	ACGT	2 cut(s)	543, 634
Hsp92II	CATG	5 cut(s)	218, 347, 515, 539, 671
KpnI	GGTACC	1 cut(s)	680
LguI	GCTCTTC	1 cut(s)	501
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	5 cut(s)	388, 403, 454, 517, 784
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	2 cut(s)	543, 634
MboII	GAAGA	5 cut(s)	230, 263, 392, 473, 518
MfeI	CAATTG	1 cut(s)	623
MhlI	GDGCHC	4 cut(s)	234, 597, 741, 806
MluCI	AATT	2 cut(s)	384, 623
MlyI	GAGTC	3 cut(s)	71, 695, 821
MmeI	TCCRAC	1 cut(s)	583
MroXI	GAANNNNTTC	1 cut(s)	636
MspA1I	CMGCKG	1 cut(s)	485
MunI	CAATTG	1 cut(s)	623
MwoI	GCNNNNNNNGC	3 cut(s)	328, 745, 781
NcoI	CCATGG	1 cut(s)	343
NlaIII	CATG	5 cut(s)	218, 347, 515, 539, 671
NlaIV	GGNNCC	4 cut(s)	26, 232, 596, 678
NspI	RCATGY	1 cut(s)	671
PagI	TCATGA	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	3 cut(s)	71, 695, 821
PpsI	GAGTC	3 cut(s)	71, 695, 821
PpuMI	RGGWCCY	1 cut(s)	25
Psp1406I	AACGTT	1 cut(s)	634
Psp5II	RGGWCCY	1 cut(s)	25
PspFI	CCCAGC	2 cut(s)	314, 401
PspN4I	GGNNCC	4 cut(s)	26, 232, 596, 678
PspOMI	GGGCCC	1 cut(s)	230
PspPI	GGNCC	3 cut(s)	25, 230, 231
PspPPI	RGGWCCY	1 cut(s)	25
PstNI	CAGNNNCTG	2 cut(s)	422, 488
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	1 cut(s)	678
RsaNI	GTAC	1 cut(s)	677
SapI	GCTCTTC	1 cut(s)	501
SatI	GCNGC	1 cut(s)	486
Sau96I	GGNCC	3 cut(s)	25, 230, 231
SchI	GAGTC	3 cut(s)	71, 695, 821
SduI	GDGCHC	4 cut(s)	234, 597, 741, 806
SfaNI	GCATC	5 cut(s)	388, 403, 454, 517, 784
SfcI	CTRYAG	1 cut(s)	742
SinI	GGWCC	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	2 cut(s)	384, 623
SspMI	CTAG	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	209, 437
TaiI	ACGT	2 cut(s)	546, 637
TaqI	TCGA	1 cut(s)	792
TasI	AATT	2 cut(s)	384, 623
TfiI	GAWTC	1 cut(s)	221
TscAI	CASTG	4 cut(s)	127, 427, 442, 481
TseI	GCWGC	1 cut(s)	485
TspDTI	ATGAA	5 cut(s)	123, 156, 231, 444, 740
TspRI	CASTG	4 cut(s)	127, 427, 442, 481
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	384
XceI	RCATGY	1 cut(s)	671
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.