Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Forward (+)

86804658 .. 86808067

Gene Structure 3410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG640200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

ATGAGACTTTATACTACCTTTTTGGAGCCAATGTTGGGTATTCCTTCTCGGCCTCATGGTTCAGAGGATGATGAAGATGTGGACAAAGCTAGGAAGGGACCTATGAATTGTACTGCATCAAGCAATGGAGAAAGTGATGGAAGTCCTGGTGGTGAGACTACCATGGTAAATTTTAAGCAGCCTAAATCTGGGGGTAATGAAGATGAAAATGCTTTAGCAGATGGGGCAAGTTCTAGGAATAGTTTGGCTAATGGGGATACCTTAGCCAAAGAAGATGGCAGTTGCGACGCAGATAATGCCTGCAGGGATGATTCAATCTGTAATAACATTTGGGTAGAGAAAGAAGTCAAAGAACAAAAGAATATGAGTATCCCTGATAAAATGCATGGGTCAAGTAAACCGGTTGCCTCCATTGATCGAGTAGGCAATTCCAATGCATCATTTGCAGTTGGAGGAGAAAATAACCACGGAAGAATCAGCTTGGAAGTGACATCAGGGTCTGTTGCAACTACCTCAAGACCCTACGACTCCATTAGTGAAAATGAGCAGTCAAAGAAAACTAAGACTGACACTGCTGTTCCTTCATCAGAGGGTGGTGATATTGTAAAACCTGCTTCATTTGGTAATGGGGTGATTACAGAAAGCACTAAAGTCAACAGTCGTCATGAAGAATCTGTTGGGCCCTCTAAAATTGAGGAGGAAGAAAGTGAATTATCACCTGTCGGTGATTATGGGGAGGATAACTTCGTTGTCTCCGGAGACGCTGGGGTGCTGGCTTTGCCTAAGGAAAACCATGGTGTTGAAAGGCAATATCAATCTGGAAACGGGGAAGAAATTTGCTCTCAGGATGCTGGGGAAAATGATGCAGACACTGATGATGAAAACAGTGAAAATGTTTCTGAGGCTGGTGAAGATGCCTCTGGCAGTGAGACAGCTGGTGATGAGTGTTCCCGAGAAGAGCATGGAGAGGAGGAGGATGCTGAACATGATGACGTTGATGGTAAGGCTGAGAGTGAAGGAGAGGCTGAAGGGATGGCTGATGGGCACCTTGTTGGAGATGGCTGTTCTTTGCAATTGCCAGAACGTTTTCTTATGTCTGTGAAGCCTCTTGCAAAGCATGTATCGGTACCTTTAGTTGACGAAAAGAAAGACTCTTGTGTTTTTTATGGAAATGATAACTTCTATGTGCTCTATAGGCTTCATCAAATTTTATACAAAAGGATTTTATCTGCAAAATCAAATTCAGTAGGAGCAGAAACTAAGTGGAGAACTTCCAAGGATGGCAACCCTCCAGGTCTTTATGGCAGGTTTATGGGTGCACTGTACAACTTGCTTGATGGATCTGCTGATAATGCAAAATTTGAGGATGAGTGCCGAGCTATTATTGGAAATCAGTCATACATCTTATTCACATTGGACAAGTTAATATATAAATTTGTTAAACAGCTAATTGATTCTGTCTATTTTGAAAACACACGTGTCCTTGTTCACGAGGAGAACATTTACAGATTGGAATTCTTCTCTGCACCCTCCCGGCTGTCCATCCAGCTGATGGACAGCCCTGGCAAAAAGGAGCCACATGGAATTACCCTGCAGAGAAACAAGCGCAAATATGCAGGGCAAGATGAATCCACTGCGTTTTCCAATGCCATGGAGGATGTTCAATTAGTCAATGGGTTGGAGTGTAAAATAGCTTGCAACTCATCCAAGAAGATTACTTCTTCCGTAAGAGAAGGAAAAGGAGAGTCAGAGTCCAGATCACCATATTGTGATCAGACGAGGGTACAGCGGTTCCACAAATTCTTGTCCGTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

605

Amino Acids

65.81

Weight (kDa)

4.69

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sin3a_C	PF16879	388 - 484	5.7e-20	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	496
Acc36I	ACCTGC	2 cut(s)	619, 1296
Acc65I	GGTACC	1 cut(s)	1126
AccB1I	GGYRCC	2 cut(s)	1044, 1126
AccB7I	CCANNNNNTGG	1 cut(s)	1552
AccIII	TCCGGA	1 cut(s)	755
AciI	CCGC	1 cut(s)	1789
AclI	AACGTT	1 cut(s)	1084
AclWI	GGATC	1 cut(s)	1348
AcsI	RAATTY	8 cut(s)	169, 834, 1206, 1240, 1358, 1433, 1514, 1799
AcuI	CTGAAG	1 cut(s)	1047
AcvI	CACGTG	1 cut(s)	1478
AfaI	GTAC	4 cut(s)	112, 1128, 1325, 1785
AfiI	CCNNNNNNNGG	3 cut(s)	35, 188, 1552
AflIII	ACRYGT	2 cut(s)	1475, 1477
AgeI	ACCGGT	1 cut(s)	400
AgsI	TTSAA	4 cut(s)	315, 803, 1469, 1664
AjnI	CCWGG	3 cut(s)	145, 1291, 1561
AjuI	GAANNNNNNNTTGG	2 cut(s)	660, 692
AluBI	AGCT	7 cut(s)	89, 480, 935, 1379, 1447, 1549, 1694
AluI	AGCT	7 cut(s)	89, 480, 935, 1379, 1447, 1549, 1694
Alw21I	GWGCWC	2 cut(s)	1191, 1321
Alw26I	GTCTC	4 cut(s)	149, 753, 757, 923
Alw44I	GTGCAC	1 cut(s)	1317
AlwI	GGATC	1 cut(s)	1348
AlwNI	CAGNNNCTG	2 cut(s)	500, 872
Ama87I	CYCGRG	1 cut(s)	951
Aor13HI	TCCGGA	1 cut(s)	755
AoxI	GGCC	2 cut(s)	50, 680
ApaI	GGGCCC	1 cut(s)	684
ApaLI	GTGCAC	1 cut(s)	1317
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	8 cut(s)	169, 834, 1206, 1240, 1358, 1433, 1514, 1799
AsiGI	ACCGGT	1 cut(s)	400
Asp700I	GAANNNNTTC	1 cut(s)	1086
Asp718I	GGTACC	1 cut(s)	1126
AspLEI	GCGC	1 cut(s)	1608
AspS9I	GGNCC	3 cut(s)	98, 680, 681
AsuC2I	CCSGG	1 cut(s)	1534
AsuHPI	GGTGA	8 cut(s)	164, 608, 643, 708, 737, 920, 950, 1752
AvaI	CYCGRG	1 cut(s)	951
AvaII	GGWCC	1 cut(s)	98
AxyI	CCTNAGG	1 cut(s)	783
BaeGI	GKGCMC	3 cut(s)	684, 1047, 1321
BaeI	ACNNNNGTAYC	2 cut(s)	1775, 1808
BanI	GGYRCC	2 cut(s)	1044, 1126
BanII	GRGCYC	1 cut(s)	684
BauI	CACGAG	1 cut(s)	1490
BbrPI	CACGTG	1 cut(s)	1478
Bbv12I	GWGCWC	2 cut(s)	1191, 1321
BbvI	GCAGC	1 cut(s)	190
BciT130I	CCWGG	3 cut(s)	147, 1293, 1563
BciVI	GTATCC	2 cut(s)	250, 380
BclI	TGATCA	1 cut(s)	1771
BcnI	CCSGG	1 cut(s)	1534
BcoDI	GTCTC	4 cut(s)	149, 753, 757, 923
BfaI	CTAG	2 cut(s)	90, 234
BfmI	CTRYAG	3 cut(s)	301, 1192, 1592
BfuAI	ACCTGC	2 cut(s)	619, 1296
BfuI	GTATCC	2 cut(s)	250, 380
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
Bme1390I	CCNGG	4 cut(s)	147, 1293, 1534, 1563
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	951
BmgT120I	GGNCC	3 cut(s)	98, 680, 681
BmiI	GGNNCC	7 cut(s)	27, 99, 682, 1046, 1128, 1575, 1793
BmrFI	CCNGG	4 cut(s)	147, 1293, 1534, 1563
BmsI	GCATC	6 cut(s)	125, 446, 838, 853, 904, 967
BpmI	CTGGAG	1 cut(s)	1275
Bpu10I	CCTNAGC	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	499
BpuMI	CCSGG	1 cut(s)	1534
BsaAI	YACGTR	1 cut(s)	1478
BsaJI	CCNNGG	6 cut(s)	162, 466, 793, 1275, 1561, 1650
BsaWI	WCCGGW	2 cut(s)	400, 755
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 188, 1552
Bse118I	RCCGGY	1 cut(s)	400
Bse21I	CCTNAGG	1 cut(s)	783
Bse3DI	GCAATG	1 cut(s)	130
BseAI	TCCGGA	1 cut(s)	755
BseBI	CCWGG	3 cut(s)	147, 1293, 1563
BseDI	CCNNGG	6 cut(s)	162, 466, 793, 1275, 1561, 1650
BseLI	CCNNNNNNNGG	3 cut(s)	35, 188, 1552
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	3 cut(s)	857, 891, 999
BseRI	GAGGAG	5 cut(s)	468, 710, 983, 986, 1508
BseSI	GKGCMC	3 cut(s)	684, 1047, 1321
BseXI	GCAGC	1 cut(s)	190
BseYI	CCCAGC	2 cut(s)	764, 851
BsgI	GTGCAG	1 cut(s)	1509
BshFI	GGCC	2 cut(s)	52, 682
BshNI	GGYRCC	2 cut(s)	1044, 1126
BshTI	ACCGGT	1 cut(s)	400
BsiHKAI	GWGCWC	2 cut(s)	1191, 1321
BsiHKCI	CYCGRG	1 cut(s)	951
BsiSI	CCGG	3 cut(s)	401, 756, 1534
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	3 cut(s)	35, 188, 1552
BsmAI	GTCTC	4 cut(s)	149, 753, 757, 923
BsmBI	CGTCTC	1 cut(s)	753
BsmFI	GGGAC	1 cut(s)	111
BsnI	GGCC	2 cut(s)	52, 682
BsoBI	CYCGRG	1 cut(s)	951
Bsp120I	GGGCCC	1 cut(s)	680
Bsp1286I	GDGCHC	4 cut(s)	684, 1047, 1191, 1321
Bsp13I	TCCGGA	1 cut(s)	755
Bsp1407I	TGTACA	1 cut(s)	1323
Bsp143I	GATC	4 cut(s)	415, 1340, 1757, 1771
Bsp19I	CCATGG	3 cut(s)	162, 793, 1650
BspACI	CCGC	1 cut(s)	1789
BspANI	GGCC	2 cut(s)	52, 682
BspCNI	CTCAG	3 cut(s)	856, 892, 1000
BspEI	TCCGGA	1 cut(s)	755
BspHI	TCATGA	1 cut(s)	664
BspLI	GGNNCC	7 cut(s)	27, 99, 682, 1046, 1128, 1575, 1793
BspMAI	CTGCAG	2 cut(s)	305, 1596
BspMI	ACCTGC	2 cut(s)	619, 1296
BspPI	GGATC	1 cut(s)	1348
BspQI	GCTCTTC	1 cut(s)	951
BspT107I	GGYRCC	2 cut(s)	1044, 1126
BsrDI	GCAATG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	400
BsrGI	TGTACA	1 cut(s)	1323
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	6 cut(s)	162, 466, 793, 1275, 1561, 1650
BssMI	GATC	4 cut(s)	415, 1340, 1757, 1771
BssSI	CACGAG	1 cut(s)	1490
BssT1I	CCWWGG	4 cut(s)	162, 793, 1275, 1650
Bst2BI	CACGAG	1 cut(s)	1490
Bst2UI	CCWGG	3 cut(s)	147, 1293, 1563
Bst4CI	ACNGT	3 cut(s)	659, 887, 1323
Bst6I	CTCTTC	1 cut(s)	951
BstAPI	GCANNNNNTGC	2 cut(s)	296, 443
BstAUI	TGTACA	1 cut(s)	1323
BstBAI	YACGTR	1 cut(s)	1478
BstC8I	GCNNGC	3 cut(s)	301, 774, 1696
BstDEI	CTNAG	7 cut(s)	262, 561, 783, 843, 900, 1008, 1260
BstDSI	CCRYGG	4 cut(s)	162, 466, 793, 1650
BstHHI	GCGC	1 cut(s)	1608
BstKTI	GATC	4 cut(s)	418, 1343, 1760, 1774
BstMAI	GTCTC	4 cut(s)	149, 753, 757, 923
BstMBI	GATC	4 cut(s)	415, 1340, 1757, 1771
BstMWI	GCNNNNNNNGC	6 cut(s)	224, 296, 443, 778, 1195, 1352
BstNI	CCWGG	3 cut(s)	147, 1293, 1563
BstNSI	RCATGY	1 cut(s)	1121
BstSCI	CCNGG	4 cut(s)	145, 1291, 1532, 1561
BstSFI	CTRYAG	3 cut(s)	301, 1192, 1592
BstSLI	GKGCMC	3 cut(s)	684, 1047, 1321
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	1340
BstXI	CCANNNNNNTGG	1 cut(s)	1651
BstYI	RGATCY	1 cut(s)	1340
Bsu36I	CCTNAGG	1 cut(s)	783
BsuI	GTATCC	2 cut(s)	250, 380
BsuRI	GGCC	2 cut(s)	52, 682
BtgI	CCRYGG	4 cut(s)	162, 466, 793, 1650
BtsI	GCAGTG	3 cut(s)	570, 931, 1632
BtsIMutI	CAGTG	6 cut(s)	570, 870, 892, 931, 1319, 1632
BveI	ACCTGC	2 cut(s)	619, 1296
Cac8I	GCNNGC	3 cut(s)	301, 774, 1696
CaiI	CAGNNNCTG	2 cut(s)	500, 872
CciI	TCATGA	1 cut(s)	664
CfoI	GCGC	1 cut(s)	1608
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	3 cut(s)	98, 680, 681
CseI	GACGC	2 cut(s)	296, 770
Csp6I	GTAC	4 cut(s)	111, 1127, 1324, 1784
CspAI	ACCGGT	1 cut(s)	400
CviQI	GTAC	4 cut(s)	111, 1127, 1324, 1784
DdeI	CTNAG	7 cut(s)	262, 561, 783, 843, 900, 1008, 1260
DpnI	GATC	4 cut(s)	417, 1342, 1759, 1773
DpnII	GATC	4 cut(s)	415, 1340, 1757, 1771
DrdI	GACNNNNNNGTC	1 cut(s)	496
DseDI	GACNNNNNNGTC	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	951
EarI	CTCTTC	1 cut(s)	951
Eco130I	CCWWGG	4 cut(s)	162, 793, 1275, 1650
Eco24I	GRGCYC	1 cut(s)	684
Eco47I	GGWCC	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	1047
Eco72I	CACGTG	1 cut(s)	1478
Eco81I	CCTNAGG	1 cut(s)	783
Eco88I	CYCGRG	1 cut(s)	951
EcoO109I	RGGNCCY	2 cut(s)	98, 681
EcoRI	GAATTC	1 cut(s)	1514
EcoRII	CCWGG	3 cut(s)	145, 1291, 1561
EcoT14I	CCWWGG	4 cut(s)	162, 793, 1275, 1650
EcoT22I	ATGCAT	2 cut(s)	387, 439
EcoT38I	GRGCYC	1 cut(s)	684
ErhI	CCWWGG	4 cut(s)	162, 793, 1275, 1650
Esp3I	CGTCTC	1 cut(s)	753
FaqI	GGGAC	1 cut(s)	111
FbaI	TGATCA	1 cut(s)	1771
Fnu4HI	GCNGC	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	2 cut(s)	90, 234
GlaI	GCGC	1 cut(s)	1607
GluI	GCNGC	1 cut(s)	179
GsaI	CCCAGC	2 cut(s)	768, 855
GsuI	CTGGAG	1 cut(s)	1275
HaeIII	GGCC	2 cut(s)	52, 682
HapII	CCGG	3 cut(s)	401, 756, 1534
HgaI	GACGC	2 cut(s)	296, 770
HhaI	GCGC	1 cut(s)	1608
Hin6I	GCGC	1 cut(s)	1606
HinP1I	GCGC	1 cut(s)	1606
HincII	GTYRAC	2 cut(s)	655, 1138
HindII	GTYRAC	2 cut(s)	655, 1138
HinfI	GANTC	9 cut(s)	311, 474, 527, 671, 1151, 1454, 1628, 1745, 1751
HpaII	CCGG	3 cut(s)	401, 756, 1534
HphI	GGTGA	8 cut(s)	164, 608, 643, 708, 737, 920, 950, 1752
Hpy166II	GTNNAC	6 cut(s)	82, 398, 655, 1138, 1319, 1489
Hpy188I	TCNGA	5 cut(s)	64, 589, 901, 1750, 1776
Hpy188III	TCNNGA	8 cut(s)	516, 665, 756, 819, 845, 951, 1490, 1755
Hpy8I	GTNNAC	6 cut(s)	82, 398, 655, 1138, 1319, 1489
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	6 cut(s)	54, 88, 591, 1010, 1022, 1727
HpyCH4III	ACNGT	3 cut(s)	659, 887, 1323
HpyCH4IV	ACGT	3 cut(s)	993, 1084, 1477
HpyF10VI	GCNNNNNNNGC	6 cut(s)	224, 296, 443, 778, 1195, 1352
HpyF3I	CTNAG	7 cut(s)	262, 561, 783, 843, 900, 1008, 1260
HpySE526I	ACGT	3 cut(s)	993, 1084, 1477
HspAI	GCGC	1 cut(s)	1606
Kpn2I	TCCGGA	1 cut(s)	755
KpnI	GGTACC	1 cut(s)	1130
Ksp22I	TGATCA	1 cut(s)	1771
Kzo9I	GATC	4 cut(s)	415, 1340, 1757, 1771
LguI	GCTCTTC	1 cut(s)	951
LmnI	GCTCC	3 cut(s)	25, 1250, 1573
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	6 cut(s)	125, 446, 838, 853, 904, 967
MaeI	CTAG	2 cut(s)	90, 234
MaeII	ACGT	3 cut(s)	993, 1084, 1477
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	4 cut(s)	417, 1342, 1759, 1773
MboI	GATC	4 cut(s)	415, 1340, 1757, 1771
MfeI	CAATTG	1 cut(s)	1073
MflI	RGATCY	1 cut(s)	1340
MhlI	GDGCHC	4 cut(s)	684, 1047, 1191, 1321
MlyI	GAGTC	4 cut(s)	521, 1145, 1754, 1760
MmeI	TCCRAC	3 cut(s)	430, 1033, 1659
Mph1103I	ATGCAT	2 cut(s)	387, 439
MroI	TCCGGA	1 cut(s)	755
MroXI	GAANNNNTTC	1 cut(s)	1086
MseI	TTAA	3 cut(s)	174, 1424, 1440
MspA1I	CMGCKG	3 cut(s)	935, 1549, 1789
MspI	CCGG	3 cut(s)	401, 756, 1534
MspR9I	CCNGG	4 cut(s)	147, 1293, 1534, 1563
MunI	CAATTG	1 cut(s)	1073
MvaI	CCWGG	3 cut(s)	147, 1293, 1563
MwoI	GCNNNNNNNGC	6 cut(s)	224, 296, 443, 778, 1195, 1352
NciI	CCSGG	1 cut(s)	1534
NcoI	CCATGG	3 cut(s)	162, 793, 1650
NdeII	GATC	4 cut(s)	415, 1340, 1757, 1771
NlaIV	GGNNCC	7 cut(s)	27, 99, 682, 1046, 1128, 1575, 1793
NmeAIII	GCCGAG	2 cut(s)	28, 1400
NmuCI	GTSAC	1 cut(s)	487
NsiI	ATGCAT	2 cut(s)	387, 439
NspI	RCATGY	1 cut(s)	1121
PagI	TCATGA	1 cut(s)	664
PciSI	GCTCTTC	1 cut(s)	951
PdmI	GAANNNNTTC	1 cut(s)	1086
PfeI	GAWTC	5 cut(s)	311, 474, 671, 1454, 1628
PflMI	CCANNNNNTGG	1 cut(s)	1552
PinAI	ACCGGT	1 cut(s)	400
PkrI	GCNGC	1 cut(s)	180
PleI	GAGTC	4 cut(s)	521, 1145, 1753, 1759
PmaCI	CACGTG	1 cut(s)	1478
PmlI	CACGTG	1 cut(s)	1478
PpsI	GAGTC	4 cut(s)	521, 1145, 1753, 1759
Ppu21I	YACGTR	1 cut(s)	1478
PpuMI	RGGWCCY	1 cut(s)	98
Psp1406I	AACGTT	1 cut(s)	1084
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	3 cut(s)	145, 1291, 1561
PspCI	CACGTG	1 cut(s)	1478
PspFI	CCCAGC	2 cut(s)	764, 851
PspGI	CCWGG	3 cut(s)	145, 1291, 1561
PspN4I	GGNNCC	7 cut(s)	27, 99, 682, 1046, 1128, 1575, 1793
PspOMI	GGGCCC	1 cut(s)	680
PspPI	GGNCC	3 cut(s)	98, 680, 681
PspPPI	RGGWCCY	1 cut(s)	98
PstI	CTGCAG	2 cut(s)	305, 1596
PstNI	CAGNNNCTG	2 cut(s)	500, 872
PsuI	RGATCY	1 cut(s)	1340
PvuII	CAGCTG	2 cut(s)	935, 1549
RsaI	GTAC	4 cut(s)	112, 1128, 1325, 1785
RsaNI	GTAC	4 cut(s)	111, 1127, 1324, 1784
SapI	GCTCTTC	1 cut(s)	951
SaqAI	TTAA	3 cut(s)	174, 1424, 1440
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	4 cut(s)	415, 1340, 1757, 1771
Sau96I	GGNCC	3 cut(s)	98, 680, 681
SbfI	CCTGCAGG	1 cut(s)	305
SchI	GAGTC	4 cut(s)	521, 1145, 1754, 1760
ScrFI	CCNGG	4 cut(s)	147, 1293, 1534, 1563
SdaI	CCTGCAGG	1 cut(s)	305
SduI	GDGCHC	4 cut(s)	684, 1047, 1191, 1321
SfaNI	GCATC	6 cut(s)	125, 446, 838, 853, 904, 967
SfcI	CTRYAG	3 cut(s)	301, 1192, 1592
SinI	GGWCC	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	514
SmoI	CTYRAG	1 cut(s)	514
Sse8387I	CCTGCAGG	1 cut(s)	305
SsiI	CCGC	1 cut(s)	1789
SspMI	CTAG	2 cut(s)	90, 234
StyD4I	CCNGG	4 cut(s)	145, 1291, 1532, 1561
StyI	CCWWGG	4 cut(s)	162, 793, 1275, 1650
TaaI	ACNGT	3 cut(s)	659, 887, 1323
TaiI	ACGT	3 cut(s)	996, 1087, 1480
TaqI	TCGA	1 cut(s)	418
TatI	WGTACW	2 cut(s)	110, 1323
TfiI	GAWTC	5 cut(s)	311, 474, 671, 1454, 1628
Tru1I	TTAA	3 cut(s)	174, 1424, 1440
Tru9I	TTAA	3 cut(s)	174, 1424, 1440
TscAI	CASTG	6 cut(s)	577, 877, 892, 931, 1326, 1639
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	487
TspGWI	ACGGA	3 cut(s)	483, 1714, 1798
TspRI	CASTG	6 cut(s)	577, 877, 892, 931, 1326, 1639
Van91I	CCANNNNNTGG	1 cut(s)	1552
VneI	GTGCAC	1 cut(s)	1317
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	8 cut(s)	169, 834, 1206, 1240, 1358, 1433, 1514, 1799
XceI	RCATGY	1 cut(s)	1121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1549
XmnI	GAANNNNTTC	1 cut(s)	1086
XspI	CTAG	2 cut(s)	90, 234
Zsp2I	ATGCAT	2 cut(s)	387, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.