Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013078.1

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Reverse (-)

70985 .. 72255

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013078.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgtcgggtattccttctcggcctcatggttcagaggatgatgaagatgtggacaaagctaggaaggggcctatgaattgtactgcatcaagcaatggagaaagtgatggaagtcctggtggtgagactaccatggtaaattttaagcagcctaaatctgggggtaatgaagatgaaaatgctttagcagatgtggcaagttctaggaatagtttggctaatggggataccttagccaaagcagttgcgacgcagataatgcctgcagggatgattcaatctggtggtgatattgtaaaacctgcttcatttggtaatggggtgattacagaaagcactaaagtcaacagtcgtcatgaagaatctgttgggccctctaaaattgagaaggaagaaggtgaattatcaccggtcggtgattatggggaggataacttcgttgtctctggagacgctggggtgctggctttgcctaaggaaaaccatggtgttgaaaggcaatatcaatctggaaacggggaagaaatttgctctcaggatgctggggaaaatgatgcagacactgatgatgaaaacagtgaaaatgtttctgaggctggtgaagatgcctctggcagtgagacagctgctgatgagtgttcccgagaagagcatggagaggaggaggatgctgaacatgatgacgttgatggtaaggctgagagtgaaggagaggctgaagggatggctgatgggcaccttgttggagatggctgttctttgcaattgccagaacgttttcttatgtctgtgaagcctcttgcaaagcatgtatcggtacctttagttgacgaaaagaaagactcgtgtttttttatggaaatgataacttctatgtgctctataggcttcatcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

299

Amino Acids

31.35

Weight (kDa)

4.22

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	310
Acc65I	GGTACC	1 cut(s)	817
AccB1I	GGYRCC	2 cut(s)	735, 817
AclI	AACGTT	1 cut(s)	775
AcsI	RAATTY	2 cut(s)	139, 525
AcuI	CTGAAG	1 cut(s)	738
AfaI	GTAC	2 cut(s)	82, 819
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgeI	ACCGGT	1 cut(s)	409
AgsI	TTSAA	2 cut(s)	278, 494
AjnI	CCWGG	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	2 cut(s)	351, 383
AluBI	AGCT	2 cut(s)	59, 626
AluI	AGCT	2 cut(s)	59, 626
Alw21I	GWGCWC	1 cut(s)	881
Alw26I	GTCTC	4 cut(s)	119, 444, 448, 614
AlwNI	CAGNNNCTG	2 cut(s)	563, 629
Ama87I	CYCGRG	1 cut(s)	642
AoxI	GGCC	3 cut(s)	20, 68, 371
ApaI	GGGCCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	148, 626
ApoI	RAATTY	2 cut(s)	139, 525
AsiGI	ACCGGT	1 cut(s)	409
Asp700I	GAANNNNTTC	1 cut(s)	777
Asp718I	GGTACC	1 cut(s)	817
AspS9I	GGNCC	3 cut(s)	68, 371, 372
AsuHPI	GGTGA	7 cut(s)	134, 299, 334, 399, 410, 428, 611
AvaI	CYCGRG	1 cut(s)	642
AxyI	CCTNAGG	1 cut(s)	474
BaeGI	GKGCMC	2 cut(s)	375, 738
BanI	GGYRCC	2 cut(s)	735, 817
BanII	GRGCYC	1 cut(s)	375
BauI	CACGAG	1 cut(s)	844
Bbv12I	GWGCWC	1 cut(s)	881
BbvI	GCAGC	2 cut(s)	160, 613
BccI	CCATC	5 cut(s)	101, 683, 718, 725, 743
BciT130I	CCWGG	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	220
BcoDI	GTCTC	4 cut(s)	119, 444, 448, 614
BfaI	CTAG	2 cut(s)	60, 204
BfmI	CTRYAG	2 cut(s)	264, 882
BfuAI	ACCTGC	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	220
BisI	GCNGC	2 cut(s)	149, 627
BlsI	GCNGC	2 cut(s)	150, 628
Bme1390I	CCNGG	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	642
BmgT120I	GGNCC	3 cut(s)	68, 371, 372
BmiI	GGNNCC	4 cut(s)	69, 373, 737, 819
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	5 cut(s)	95, 529, 544, 595, 658
BpmI	CTGGAG	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	132, 484
BsaWI	WCCGGW	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	409
Bse21I	CCTNAGG	1 cut(s)	474
Bse3DI	GCAATG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	132, 484
BseGI	GGATG	5 cut(s)	43, 276, 544, 673, 729
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	3 cut(s)	548, 582, 690
BseRI	GAGGAG	2 cut(s)	674, 677
BseSI	GKGCMC	2 cut(s)	375, 738
BseXI	GCAGC	2 cut(s)	160, 613
BseYI	CCCAGC	2 cut(s)	455, 542
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	3 cut(s)	22, 70, 373
BshNI	GGYRCC	2 cut(s)	735, 817
BshTI	ACCGGT	1 cut(s)	409
BsiEI	CGRYCG	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	881
BsiHKCI	CYCGRG	1 cut(s)	642
BsiSI	CCGG	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	4 cut(s)	119, 444, 448, 614
BsmBI	CGTCTC	1 cut(s)	444
BsnI	GGCC	3 cut(s)	22, 70, 373
BsoBI	CYCGRG	1 cut(s)	642
Bsp120I	GGGCCC	1 cut(s)	371
Bsp1286I	GDGCHC	3 cut(s)	375, 738, 881
Bsp19I	CCATGG	2 cut(s)	132, 484
BspANI	GGCC	3 cut(s)	22, 70, 373
BspCNI	CTCAG	3 cut(s)	547, 583, 691
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	4 cut(s)	69, 373, 737, 819
BspMAI	CTGCAG	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	310
BspQI	GCTCTTC	1 cut(s)	642
BspT107I	GGYRCC	2 cut(s)	735, 817
BsrDI	GCAATG	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	409
BssAI	RCCGGY	1 cut(s)	409
BssECI	CCNNGG	2 cut(s)	132, 484
BssSI	CACGAG	1 cut(s)	844
BssT1I	CCWWGG	2 cut(s)	132, 484
Bst2BI	CACGAG	1 cut(s)	844
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	350, 578
Bst6I	CTCTTC	1 cut(s)	642
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstC8I	GCNNGC	2 cut(s)	264, 465
BstDEI	CTNAG	5 cut(s)	232, 474, 534, 591, 699
BstDSI	CCRYGG	2 cut(s)	132, 484
BstF5I	GGATG	5 cut(s)	43, 276, 544, 673, 729
BstMAI	GTCTC	4 cut(s)	119, 444, 448, 614
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 259, 469, 885
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	812
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	2 cut(s)	264, 882
BstSLI	GKGCMC	2 cut(s)	375, 738
BstV1I	GCAGC	2 cut(s)	160, 613
Bsu36I	CCTNAGG	1 cut(s)	474
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	3 cut(s)	22, 70, 373
BtgI	CCRYGG	2 cut(s)	132, 484
BtsCI	GGATG	5 cut(s)	43, 276, 544, 673, 729
BtsI	GCAGTG	1 cut(s)	622
BtsIMutI	CAGTG	3 cut(s)	561, 583, 622
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	2 cut(s)	264, 465
CaiI	CAGNNNCTG	2 cut(s)	563, 629
CciI	TCATGA	1 cut(s)	355
Cfr10I	RCCGGY	1 cut(s)	409
Cfr13I	GGNCC	3 cut(s)	68, 371, 372
CseI	GACGC	2 cut(s)	259, 461
Csp6I	GTAC	2 cut(s)	81, 818
CspAI	ACCGGT	1 cut(s)	409
CviAII	CATG	7 cut(s)	26, 133, 356, 485, 653, 677, 809
CviQI	GTAC	2 cut(s)	81, 818
DdeI	CTNAG	5 cut(s)	232, 474, 534, 591, 699
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Eco130I	CCWWGG	2 cut(s)	132, 484
Eco24I	GRGCYC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	738
Eco81I	CCTNAGG	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	642
EcoO109I	RGGNCCY	2 cut(s)	68, 372
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	2 cut(s)	132, 484
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	2 cut(s)	132, 484
Esp3I	CGTCTC	1 cut(s)	444
FaeI	CATG	7 cut(s)	29, 136, 359, 488, 656, 680, 812
FatI	CATG	7 cut(s)	25, 132, 355, 484, 652, 676, 808
Fnu4HI	GCNGC	2 cut(s)	149, 627
FokI	GGATG	5 cut(s)	50, 283, 551, 680, 736
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	2 cut(s)	149, 627
FspBI	CTAG	2 cut(s)	60, 204
GluI	GCNGC	2 cut(s)	149, 627
GsaI	CCCAGC	2 cut(s)	459, 546
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	3 cut(s)	22, 70, 373
HapII	CCGG	1 cut(s)	410
HgaI	GACGC	2 cut(s)	259, 461
Hin1II	CATG	7 cut(s)	29, 136, 359, 488, 656, 680, 812
HincII	GTYRAC	2 cut(s)	346, 829
HindII	GTYRAC	2 cut(s)	346, 829
HinfI	GANTC	3 cut(s)	274, 362, 842
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	7 cut(s)	134, 299, 334, 399, 410, 428, 611
Hpy166II	GTNNAC	3 cut(s)	52, 346, 829
Hpy188I	TCNGA	2 cut(s)	34, 592
Hpy188III	TCNNGA	5 cut(s)	356, 447, 510, 536, 642
Hpy8I	GTNNAC	3 cut(s)	52, 346, 829
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	6 cut(s)	24, 58, 382, 389, 701, 713
HpyCH4III	ACNGT	2 cut(s)	350, 578
HpyCH4IV	ACGT	2 cut(s)	684, 775
HpyCH4V	TGCA	5 cut(s)	86, 266, 557, 763, 803
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 259, 469, 885
HpyF3I	CTNAG	5 cut(s)	232, 474, 534, 591, 699
HpySE526I	ACGT	2 cut(s)	684, 775
Hsp92II	CATG	7 cut(s)	29, 136, 359, 488, 656, 680, 812
KpnI	GGTACC	1 cut(s)	821
LguI	GCTCTTC	1 cut(s)	642
Lsp1109I	GCAGC	2 cut(s)	160, 613
LweI	GCATC	5 cut(s)	95, 529, 544, 595, 658
MaeI	CTAG	2 cut(s)	60, 204
MaeII	ACGT	2 cut(s)	684, 775
MboII	GAAGA	7 cut(s)	56, 182, 371, 404, 533, 614, 659
MfeI	CAATTG	1 cut(s)	764
MhlI	GDGCHC	3 cut(s)	375, 738, 881
MluCI	AATT	6 cut(s)	76, 139, 381, 401, 525, 764
MlyI	GAGTC	1 cut(s)	836
MmeI	TCCRAC	1 cut(s)	724
MroXI	GAANNNNTTC	1 cut(s)	777
MseI	TTAA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	764
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	4 cut(s)	194, 259, 469, 885
NcoI	CCATGG	2 cut(s)	132, 484
NlaIII	CATG	7 cut(s)	29, 136, 359, 488, 656, 680, 812
NlaIV	GGNNCC	4 cut(s)	69, 373, 737, 819
NspI	RCATGY	1 cut(s)	812
PagI	TCATGA	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	642
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	2 cut(s)	274, 362
PinAI	ACCGGT	1 cut(s)	409
PkrI	GCNGC	2 cut(s)	150, 628
PleI	GAGTC	1 cut(s)	836
PpsI	GAGTC	1 cut(s)	836
Psp1406I	AACGTT	1 cut(s)	775
Psp6I	CCWGG	1 cut(s)	115
PspFI	CCCAGC	2 cut(s)	455, 542
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	4 cut(s)	69, 373, 737, 819
PspOMI	GGGCCC	1 cut(s)	371
PspPI	GGNCC	3 cut(s)	68, 371, 372
PstI	CTGCAG	1 cut(s)	268
PstNI	CAGNNNCTG	2 cut(s)	563, 629
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	2 cut(s)	82, 819
RsaNI	GTAC	2 cut(s)	81, 818
SapI	GCTCTTC	1 cut(s)	642
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	149, 627
Sau96I	GGNCC	3 cut(s)	68, 371, 372
SbfI	CCTGCAGG	1 cut(s)	268
SchI	GAGTC	1 cut(s)	836
ScrFI	CCNGG	1 cut(s)	117
SdaI	CCTGCAGG	1 cut(s)	268
SduI	GDGCHC	3 cut(s)	375, 738, 881
SetI	ASST	9 cut(s)	61, 233, 304, 400, 628, 687, 741, 778, 823
SfaNI	GCATC	5 cut(s)	95, 529, 544, 595, 658
SfcI	CTRYAG	2 cut(s)	264, 882
Sse8387I	CCTGCAGG	1 cut(s)	268
Sse9I	AATT	6 cut(s)	76, 139, 381, 401, 525, 764
SspMI	CTAG	2 cut(s)	60, 204
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	2 cut(s)	132, 484
TaaI	ACNGT	2 cut(s)	350, 578
TaiI	ACGT	2 cut(s)	687, 778
TasI	AATT	6 cut(s)	76, 139, 381, 401, 525, 764
TatI	WGTACW	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	274, 362
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	3 cut(s)	568, 583, 622
TseI	GCWGC	2 cut(s)	148, 626
TspDTI	ATGAA	8 cut(s)	57, 89, 183, 189, 297, 372, 585, 880
TspRI	CASTG	3 cut(s)	568, 583, 622
XapI	RAATTY	2 cut(s)	139, 525
XceI	RCATGY	1 cut(s)	812
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	2 cut(s)	60, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.