Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Forward (+)

78787496 .. 78789169

Gene Structure 1674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G051110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGTCGGGTATTCCTTCTCGGCCTCATGGTTCAGAGGATGATGAAGATGTGGACAAAGCTAGGAAGGGGCCTATGAATTGTACTGCATCAAGCAATGGAGAAAGTGATGGAAGTCCTGGTGGTGAGACTACCATGGTAAATTTTAAGCAGCCTAAATCTGGGGGTAATGAAGATGAAAATGCTTTAGCAGATGTGGCAAGTTCTAGGAATAGTTTGGCTAATGGGGATACCTTAGCCAAAGAAGATGGCAGTTGCGACGCAGATAATGCCCGCAGGGATGATTCAATCTGTAATAACATTTGGGTAGAGAAAGAAGTCAAAGAACAAAAGAATATGAGTATCCCTGATAAAATGCATGGGTCAAGTAAACCGGTTGCCTCCATTGATCGAGTAGGCAATTCCAATGCATCATTTGCAGTTGGAGGAGAAAATAACCACGGAAGAATCAGCTTGGAAGTGACATCAGGGTCTGTTGCAACTACCTCAAGACCCTACGACTCCATTATTGAAAATGAGCAGTCAAAGAAAACTAATACTGACACTGCTGTTCCTTCATCAGAGGGTGGTGATATTGTAAAACCTGCTTCATTTGGTAATGGGGTGATTACAGAAAGCACTAAAGTCAACAGTCGTCATGAAGAATCTGTTGGGCCCTCTAAAATTGAGAAGGAAGAAGGTGGATTATCACCTATCGGTGATTATGGGGAGGATAACTTCGTTGTCTCTGGAGACGCTGGGGTGCTGGCTTTGCCTAAGGAAAACCATGGTGTTGAAAGGCAATATCAATCTGGAAACGGGGAAGAAATTTGCTCTCAGGATGCTGGGGAAAATGATGCAGACACTGATGATGAAAACAGTGAAAATGTTTCTGAGGCTGGTGAAGATGCCTCTGGCAGTGAGACAGCTGCTGATGAGTGTTCCCGAGAAGAGCATGGAGAGGAGGAGAATGCTGAACATGATGACGTTGATGGTAAGGCTGAGAGTGAAGGAGAGGCTGAAGGGATGGCTGATGGGCACCTTGTTGGAGATGGCTGTTCTTTGCAATTGCCAGAACGTTTTCTTATGTCTGTGAAGCCTCTTGCAAAGCATGTATCGGTACCTTTAGTTGACGAAAAGAAAGACTCTCGTGTTTTTTATGGAAATGATAACTTCTATGTGCTCTATAGGCTTCATCAAATTTTATACGAAAGGATTTTATCTGCAAAATCAAATTCAGTAGGAGCAGAAACTAAAGGTATCATCTTTCGTAGGATCCTGATATCATCTTTTTTGACAAAGTTTATTGCGCGCACCCTTTCGTCCAAACCGACCCGAACGACCAATCCTATGTATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

445

Amino Acids

47.58

Weight (kDa)

4.58

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sin3a_C	PF16879	378 - 404	7.5e-06	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	466
Acc36I	ACCTGC	1 cut(s)	589
Acc65I	GGTACC	1 cut(s)	1096
AccB1I	GGYRCC	2 cut(s)	1014, 1096
AccII	CGCG	1 cut(s)	1288
AciI	CCGC	1 cut(s)	271
AclI	AACGTT	1 cut(s)	1054
AclWI	GGATC	2 cut(s)	1246, 1259
AcsI	RAATTY	4 cut(s)	139, 804, 1176, 1210
AcuI	CTGAAG	1 cut(s)	1017
AfaI	GTAC	2 cut(s)	82, 1098
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgeI	ACCGGT	1 cut(s)	370
AgsI	TTSAA	3 cut(s)	285, 509, 773
AjnI	CCWGG	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	2 cut(s)	630, 662
AloI	GAACNNNNNNTCC	2 cut(s)	1306, 1338
AluBI	AGCT	3 cut(s)	59, 450, 905
AluI	AGCT	3 cut(s)	59, 450, 905
Alw21I	GWGCWC	1 cut(s)	1161
Alw26I	GTCTC	4 cut(s)	119, 723, 727, 893
AlwI	GGATC	2 cut(s)	1246, 1259
AlwNI	CAGNNNCTG	3 cut(s)	470, 842, 908
Ama87I	CYCGRG	1 cut(s)	921
AoxI	GGCC	3 cut(s)	20, 68, 650
ApaI	GGGCCC	1 cut(s)	654
ApeKI	GCWGC	2 cut(s)	148, 905
ApoI	RAATTY	4 cut(s)	139, 804, 1176, 1210
AsiGI	ACCGGT	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	1056
Asp718I	GGTACC	1 cut(s)	1096
AspLEI	GCGC	2 cut(s)	1288, 1290
AspS9I	GGNCC	3 cut(s)	68, 650, 651
AsuHPI	GGTGA	6 cut(s)	134, 578, 613, 678, 707, 890
AvaI	CYCGRG	1 cut(s)	921
AxyI	CCTNAGG	1 cut(s)	753
BaeGI	GKGCMC	2 cut(s)	654, 1017
BamHI	GGATCC	1 cut(s)	1251
BanI	GGYRCC	2 cut(s)	1014, 1096
BanII	GRGCYC	1 cut(s)	654
BauI	CACGAG	1 cut(s)	1125
Bbv12I	GWGCWC	1 cut(s)	1161
BbvI	GCAGC	2 cut(s)	160, 892
BccI	CCATC	6 cut(s)	101, 239, 962, 997, 1004, 1022
BciT130I	CCWGG	1 cut(s)	117
BciVI	GTATCC	2 cut(s)	220, 350
BcoDI	GTCTC	4 cut(s)	119, 723, 727, 893
BfaI	CTAG	2 cut(s)	60, 204
BfmI	CTRYAG	1 cut(s)	1162
BfuAI	ACCTGC	1 cut(s)	589
BfuI	GTATCC	2 cut(s)	220, 350
BisI	GCNGC	2 cut(s)	149, 906
BlsI	GCNGC	2 cut(s)	150, 907
Bme1390I	CCNGG	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	921
BmgT120I	GGNCC	3 cut(s)	68, 650, 651
BmiI	GGNNCC	5 cut(s)	69, 652, 1016, 1098, 1253
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	5 cut(s)	95, 416, 808, 823, 874
BpmI	CTGGAG	1 cut(s)	747
Bpu10I	CCTNAGC	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	469
BsaJI	CCNNGG	3 cut(s)	132, 436, 763
BsaWI	WCCGGW	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	370
Bse21I	CCTNAGG	1 cut(s)	753
Bse3DI	GCAATG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	132, 436, 763
BseGI	GGATG	4 cut(s)	43, 283, 823, 1008
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	3 cut(s)	827, 861, 969
BsePI	GCGCGC	1 cut(s)	1286
BseRI	GAGGAG	3 cut(s)	438, 953, 956
BseSI	GKGCMC	2 cut(s)	654, 1017
BseXI	GCAGC	2 cut(s)	160, 892
BseYI	CCCAGC	2 cut(s)	734, 821
Bsh1236I	CGCG	1 cut(s)	1288
BshFI	GGCC	3 cut(s)	22, 70, 652
BshNI	GGYRCC	2 cut(s)	1014, 1096
BshTI	ACCGGT	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	1161
BsiHKCI	CYCGRG	1 cut(s)	921
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	4 cut(s)	119, 723, 727, 893
BsmBI	CGTCTC	1 cut(s)	723
BsmI	GAATGC	1 cut(s)	952
BsnI	GGCC	3 cut(s)	22, 70, 652
BsoBI	CYCGRG	1 cut(s)	921
Bsp120I	GGGCCC	1 cut(s)	650
Bsp1286I	GDGCHC	3 cut(s)	654, 1017, 1161
Bsp143I	GATC	2 cut(s)	385, 1251
Bsp19I	CCATGG	2 cut(s)	132, 763
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	3 cut(s)	22, 70, 652
BspCNI	CTCAG	3 cut(s)	826, 862, 970
BspFNI	CGCG	1 cut(s)	1288
BspHI	TCATGA	1 cut(s)	634
BspLI	GGNNCC	5 cut(s)	69, 652, 1016, 1098, 1253
BspMI	ACCTGC	1 cut(s)	589
BspPI	GGATC	2 cut(s)	1246, 1259
BspQI	GCTCTTC	1 cut(s)	921
BspT107I	GGYRCC	2 cut(s)	1014, 1096
BsrDI	GCAATG	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	3 cut(s)	132, 436, 763
BssHII	GCGCGC	1 cut(s)	1286
BssMI	GATC	2 cut(s)	385, 1251
BssSI	CACGAG	1 cut(s)	1125
BssT1I	CCWWGG	2 cut(s)	132, 763
Bst2BI	CACGAG	1 cut(s)	1125
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	629, 857
Bst6I	CTCTTC	1 cut(s)	921
BstAPI	GCANNNNNTGC	2 cut(s)	266, 413
BstC8I	GCNNGC	3 cut(s)	271, 744, 1288
BstDEI	CTNAG	5 cut(s)	232, 753, 813, 870, 978
BstDSI	CCRYGG	3 cut(s)	132, 436, 763
BstF5I	GGATG	4 cut(s)	43, 283, 823, 1008
BstFNI	CGCG	1 cut(s)	1288
BstHHI	GCGC	2 cut(s)	1288, 1290
BstKTI	GATC	2 cut(s)	388, 1254
BstMAI	GTCTC	4 cut(s)	119, 723, 727, 893
BstMBI	GATC	2 cut(s)	385, 1251
BstMWI	GCNNNNNNNGC	5 cut(s)	194, 266, 413, 748, 1165
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	1091
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	1162
BstSLI	GKGCMC	2 cut(s)	654, 1017
BstUI	CGCG	1 cut(s)	1288
BstV1I	GCAGC	2 cut(s)	160, 892
BstX2I	RGATCY	1 cut(s)	1251
BstYI	RGATCY	1 cut(s)	1251
Bsu36I	CCTNAGG	1 cut(s)	753
BsuI	GTATCC	2 cut(s)	220, 350
BsuRI	GGCC	3 cut(s)	22, 70, 652
BtgI	CCRYGG	3 cut(s)	132, 436, 763
BtsCI	GGATG	4 cut(s)	43, 283, 823, 1008
BtsI	GCAGTG	2 cut(s)	540, 901
BtsIMutI	CAGTG	4 cut(s)	540, 840, 862, 901
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	3 cut(s)	271, 744, 1288
CaiI	CAGNNNCTG	3 cut(s)	470, 842, 908
CciI	TCATGA	1 cut(s)	634
CfoI	GCGC	2 cut(s)	1288, 1290
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	3 cut(s)	68, 650, 651
CseI	GACGC	2 cut(s)	266, 740
Csp6I	GTAC	2 cut(s)	81, 1097
CspAI	ACCGGT	1 cut(s)	370
CviAII	CATG	8 cut(s)	26, 133, 356, 635, 764, 932, 956, 1088
CviQI	GTAC	2 cut(s)	81, 1097
DdeI	CTNAG	5 cut(s)	232, 753, 813, 870, 978
DpnI	GATC	2 cut(s)	387, 1253
DpnII	GATC	2 cut(s)	385, 1251
DrdI	GACNNNNNNGTC	1 cut(s)	466
DseDI	GACNNNNNNGTC	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	921
EarI	CTCTTC	1 cut(s)	921
Eco130I	CCWWGG	2 cut(s)	132, 763
Eco24I	GRGCYC	1 cut(s)	654
Eco32I	GATATC	1 cut(s)	1260
Eco57I	CTGAAG	1 cut(s)	1017
Eco81I	CCTNAGG	1 cut(s)	753
Eco88I	CYCGRG	1 cut(s)	921
EcoO109I	RGGNCCY	2 cut(s)	68, 651
EcoRII	CCWGG	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	1260
EcoT14I	CCWWGG	2 cut(s)	132, 763
EcoT22I	ATGCAT	2 cut(s)	357, 409
EcoT38I	GRGCYC	1 cut(s)	654
ErhI	CCWWGG	2 cut(s)	132, 763
Esp3I	CGTCTC	1 cut(s)	723
FaeI	CATG	8 cut(s)	29, 136, 359, 638, 767, 935, 959, 1091
FatI	CATG	8 cut(s)	25, 132, 355, 634, 763, 931, 955, 1087
FauI	CCCGC	1 cut(s)	278
Fnu4HI	GCNGC	2 cut(s)	149, 906
FokI	GGATG	4 cut(s)	50, 290, 830, 1015
FriOI	GRGCYC	1 cut(s)	654
Fsp4HI	GCNGC	2 cut(s)	149, 906
FspBI	CTAG	2 cut(s)	60, 204
GlaI	GCGC	2 cut(s)	1287, 1289
GluI	GCNGC	2 cut(s)	149, 906
GsaI	CCCAGC	2 cut(s)	738, 825
GsuI	CTGGAG	1 cut(s)	747
HaeIII	GGCC	3 cut(s)	22, 70, 652
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	2 cut(s)	266, 740
HhaI	GCGC	2 cut(s)	1288, 1290
Hin1II	CATG	8 cut(s)	29, 136, 359, 638, 767, 935, 959, 1091
Hin6I	GCGC	2 cut(s)	1286, 1288
HinP1I	GCGC	2 cut(s)	1286, 1288
HincII	GTYRAC	2 cut(s)	625, 1108
HindII	GTYRAC	2 cut(s)	625, 1108
HinfI	GANTC	5 cut(s)	281, 444, 497, 641, 1121
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	6 cut(s)	134, 578, 613, 678, 707, 890
Hpy166II	GTNNAC	4 cut(s)	52, 368, 625, 1108
Hpy188I	TCNGA	3 cut(s)	34, 559, 871
Hpy188III	TCNNGA	7 cut(s)	486, 635, 726, 789, 815, 921, 1255
Hpy8I	GTNNAC	4 cut(s)	52, 368, 625, 1108
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	7 cut(s)	24, 58, 561, 661, 668, 980, 992
HpyCH4III	ACNGT	2 cut(s)	629, 857
HpyCH4IV	ACGT	2 cut(s)	963, 1054
HpyCH4V	TGCA	9 cut(s)	86, 355, 407, 416, 476, 836, 1042, 1082, 1202
HpyF10VI	GCNNNNNNNGC	5 cut(s)	194, 266, 413, 748, 1165
HpyF3I	CTNAG	5 cut(s)	232, 753, 813, 870, 978
HpySE526I	ACGT	2 cut(s)	963, 1054
Hsp92II	CATG	8 cut(s)	29, 136, 359, 638, 767, 935, 959, 1091
HspAI	GCGC	2 cut(s)	1286, 1288
KpnI	GGTACC	1 cut(s)	1100
Kzo9I	GATC	2 cut(s)	385, 1251
LguI	GCTCTTC	1 cut(s)	921
LmnI	GCTCC	1 cut(s)	1220
Lsp1109I	GCAGC	2 cut(s)	160, 892
LweI	GCATC	5 cut(s)	95, 416, 808, 823, 874
MaeI	CTAG	2 cut(s)	60, 204
MaeII	ACGT	2 cut(s)	963, 1054
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	2 cut(s)	387, 1253
MboI	GATC	2 cut(s)	385, 1251
MboII	GAAGA	9 cut(s)	56, 182, 254, 453, 650, 683, 812, 893, 938
MfeI	CAATTG	1 cut(s)	1043
MflI	RGATCY	1 cut(s)	1251
MhlI	GDGCHC	3 cut(s)	654, 1017, 1161
MluCI	AATT	8 cut(s)	76, 139, 397, 660, 804, 1043, 1176, 1210
MlyI	GAGTC	2 cut(s)	491, 1115
MmeI	TCCRAC	2 cut(s)	400, 1003
Mph1103I	ATGCAT	2 cut(s)	357, 409
MroXI	GAANNNNTTC	1 cut(s)	1056
MseI	TTAA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	1043
Mva1269I	GAATGC	1 cut(s)	952
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	1288
MwoI	GCNNNNNNNGC	5 cut(s)	194, 266, 413, 748, 1165
NcoI	CCATGG	2 cut(s)	132, 763
NdeII	GATC	2 cut(s)	385, 1251
NlaIII	CATG	8 cut(s)	29, 136, 359, 638, 767, 935, 959, 1091
NlaIV	GGNNCC	5 cut(s)	69, 652, 1016, 1098, 1253
NmuCI	GTSAC	1 cut(s)	457
NsiI	ATGCAT	2 cut(s)	357, 409
NspI	RCATGY	1 cut(s)	1091
PagI	TCATGA	1 cut(s)	634
PauI	GCGCGC	1 cut(s)	1286
PciSI	GCTCTTC	1 cut(s)	921
PcsI	WCGNNNNNNNCGW	1 cut(s)	1304
PctI	GAATGC	1 cut(s)	952
PdmI	GAANNNNTTC	1 cut(s)	1056
PfeI	GAWTC	3 cut(s)	281, 444, 641
PinAI	ACCGGT	1 cut(s)	370
PkrI	GCNGC	2 cut(s)	150, 907
PleI	GAGTC	2 cut(s)	491, 1115
PpsI	GAGTC	2 cut(s)	491, 1115
Psp1406I	AACGTT	1 cut(s)	1054
Psp6I	CCWGG	1 cut(s)	115
PspFI	CCCAGC	2 cut(s)	734, 821
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	5 cut(s)	69, 652, 1016, 1098, 1253
PspOMI	GGGCCC	1 cut(s)	650
PspPI	GGNCC	3 cut(s)	68, 650, 651
PstNI	CAGNNNCTG	3 cut(s)	470, 842, 908
PsuI	RGATCY	1 cut(s)	1251
PteI	GCGCGC	1 cut(s)	1286
PvuII	CAGCTG	1 cut(s)	905
RsaI	GTAC	2 cut(s)	82, 1098
RsaNI	GTAC	2 cut(s)	81, 1097
SapI	GCTCTTC	1 cut(s)	921
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	149, 906
Sau3AI	GATC	2 cut(s)	385, 1251
Sau96I	GGNCC	3 cut(s)	68, 650, 651
SchI	GAGTC	2 cut(s)	491, 1115
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	3 cut(s)	654, 1017, 1161
SfaNI	GCATC	5 cut(s)	95, 416, 808, 823, 874
SfcI	CTRYAG	1 cut(s)	1162
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
Sse9I	AATT	8 cut(s)	76, 139, 397, 660, 804, 1043, 1176, 1210
SsiI	CCGC	1 cut(s)	271
SspMI	CTAG	2 cut(s)	60, 204
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	2 cut(s)	132, 763
TaaI	ACNGT	2 cut(s)	629, 857
TaiI	ACGT	2 cut(s)	966, 1057
TaqI	TCGA	1 cut(s)	388
TasI	AATT	8 cut(s)	76, 139, 397, 660, 804, 1043, 1176, 1210
TatI	WGTACW	1 cut(s)	80
TfiI	GAWTC	3 cut(s)	281, 444, 641
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	4 cut(s)	547, 847, 862, 901
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	2 cut(s)	148, 905
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	9 cut(s)	57, 89, 183, 189, 543, 576, 651, 864, 1160
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	4 cut(s)	547, 847, 862, 901
XapI	RAATTY	4 cut(s)	139, 804, 1176, 1210
XceI	RCATGY	1 cut(s)	1091
XmnI	GAANNNNTTC	1 cut(s)	1056
XspI	CTAG	2 cut(s)	60, 204
Zsp2I	ATGCAT	2 cut(s)	357, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.