Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Forward (+)

84055755 .. 84056664

Gene Structure 910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53755

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGACTTTATACTACCTTTTTGGAGCCAATGTTGGGTATTCCTTCTCGGCCTCATGGTTCAGAGGATGATGAAGATGTGGACAAAGCTAGGAAGGGGCCTATGAATTGTACTGCATCAAGCAATGGAGAAAGTGATGGAAGTCCTGGTGGTGAGACTACCATGGTAAATTTTAAGCAGCCTAAATCTGGGGGTAATGAAGATGAAAATGCTTTAGCAGATGGGGCAAGTTCTAGGAATAGTTTGGCTAATGGGGATACCTTAGCCAAAGAAGATGGCAGTTGCGACGCAGATAATGCCTGCAGGGATGATTCAATCTGTAATAACATTTGGGTAGAGAAAGAAGTCAAAGAACAAAAGAATATGAGTATCCCTGATAAAATGCATGGGTCAAGTAAACCGGTTGCCTCCATTGATCGAGTAGGCAATTCCAATGCATCATTTGCAGTTGGAGGAGAAAATAACCACGGAAGAATCAGCTTGGAAGTGACATCAGGTCTGTATTTCGTTCCTTTTATCCCTGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

176

Amino Acids

18.67

Weight (kDa)

4.65

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	169
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	2 cut(s)	35, 188
AgeI	ACCGGT	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	315
AhdI	GACNNNNNGTC	1 cut(s)	495
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	2 cut(s)	89, 480
AluI	AGCT	2 cut(s)	89, 480
Alw26I	GTCTC	1 cut(s)	149
AoxI	GGCC	2 cut(s)	50, 98
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	169
AsiGI	ACCGGT	1 cut(s)	400
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	3 cut(s)	131, 215, 269
BciT130I	CCWGG	1 cut(s)	147
BciVI	GTATCC	2 cut(s)	250, 380
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	2 cut(s)	90, 234
BfmI	CTRYAG	1 cut(s)	301
BfuI	GTATCC	2 cut(s)	250, 380
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	147
BmeRI	GACNNNNNGTC	1 cut(s)	495
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	27, 99
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	125, 446
Bpu10I	CCTNAGC	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	162, 466
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 188
Bse118I	RCCGGY	1 cut(s)	400
Bse3DI	GCAATG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	162, 466
BseGI	GGATG	2 cut(s)	73, 313
BseLI	CCNNNNNNNGG	2 cut(s)	35, 188
BseMI	GCAATG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	468
BseXI	GCAGC	1 cut(s)	190
BshFI	GGCC	2 cut(s)	52, 100
BshTI	ACCGGT	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	2 cut(s)	35, 188
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	52, 100
Bsp143I	GATC	1 cut(s)	415
Bsp19I	CCATGG	1 cut(s)	162
BspANI	GGCC	2 cut(s)	52, 100
BspLI	GGNNCC	2 cut(s)	27, 99
BspMAI	CTGCAG	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	162, 466
BssMI	GATC	1 cut(s)	415
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	147
BstAPI	GCANNNNNTGC	2 cut(s)	296, 443
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	1 cut(s)	262
BstDSI	CCRYGG	2 cut(s)	162, 466
BstF5I	GGATG	2 cut(s)	73, 313
BstKTI	GATC	1 cut(s)	418
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 296, 443
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	190
BsuI	GTATCC	2 cut(s)	250, 380
BsuRI	GGCC	2 cut(s)	52, 100
BtgI	CCRYGG	2 cut(s)	162, 466
BtsCI	GGATG	2 cut(s)	73, 313
Cac8I	GCNNGC	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	98
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	111
CspAI	ACCGGT	1 cut(s)	400
CviAII	CATG	3 cut(s)	56, 163, 386
CviJI	RGCY	8 cut(s)	28, 52, 89, 100, 181, 248, 266, 480
CviKI_1	RGCY	8 cut(s)	28, 52, 89, 100, 181, 248, 266, 480
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	1 cut(s)	262
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
DriI	GACNNNNNGTC	1 cut(s)	495
Eam1105I	GACNNNNNGTC	1 cut(s)	495
Eco130I	CCWWGG	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	162
EcoT22I	ATGCAT	2 cut(s)	387, 439
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	3 cut(s)	59, 166, 389
FaiI	YATR	6 cut(s)	12, 57, 104, 164, 365, 387
FatI	CATG	3 cut(s)	55, 162, 385
Fnu4HI	GCNGC	1 cut(s)	179
FokI	GGATG	2 cut(s)	80, 320
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	2 cut(s)	90, 234
GluI	GCNGC	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	52, 100
HapII	CCGG	1 cut(s)	401
HgaI	GACGC	1 cut(s)	296
Hin1II	CATG	3 cut(s)	59, 166, 389
HinfI	GANTC	2 cut(s)	311, 474
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	82, 398
Hpy188I	TCNGA	1 cut(s)	64
Hpy8I	GTNNAC	2 cut(s)	82, 398
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	54, 88
HpyCH4V	TGCA	5 cut(s)	116, 303, 385, 437, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 296, 443
HpyF3I	CTNAG	1 cut(s)	262
Hsp92II	CATG	3 cut(s)	59, 166, 389
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	8 cut(s)	132, 159, 174, 289, 313, 387, 414, 480
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	125, 446
MaeI	CTAG	2 cut(s)	90, 234
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	4 cut(s)	86, 212, 284, 483
MluCI	AATT	3 cut(s)	106, 169, 427
MmeI	TCCRAC	1 cut(s)	430
MnlI	CCTC	4 cut(s)	58, 63, 418, 446
Mph1103I	ATGCAT	2 cut(s)	387, 439
MseI	TTAA	2 cut(s)	174, 529
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	3 cut(s)	224, 296, 443
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	1 cut(s)	415
NlaIII	CATG	3 cut(s)	59, 166, 389
NlaIV	GGNNCC	2 cut(s)	27, 99
NmeAIII	GCCGAG	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	487
NsiI	ATGCAT	2 cut(s)	387, 439
PfeI	GAWTC	2 cut(s)	311, 474
PinAI	ACCGGT	1 cut(s)	400
PkrI	GCNGC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	27, 99
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	305
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	174, 529
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	1 cut(s)	415
Sau96I	GGNCC	1 cut(s)	98
SbfI	CCTGCAGG	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	147
SdaI	CCTGCAGG	1 cut(s)	305
SetI	ASST	5 cut(s)	20, 91, 263, 482, 499
SfaNI	GCATC	2 cut(s)	125, 446
SfcI	CTRYAG	1 cut(s)	301
Sse8387I	CCTGCAGG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	106, 169, 427
SspMI	CTAG	2 cut(s)	90, 234
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	162
TaqI	TCGA	1 cut(s)	418
TasI	AATT	3 cut(s)	106, 169, 427
TatI	WGTACW	1 cut(s)	110
TfiI	GAWTC	2 cut(s)	311, 474
Tru1I	TTAA	2 cut(s)	174, 529
Tru9I	TTAA	2 cut(s)	174, 529
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	4 cut(s)	87, 119, 213, 219
TspGWI	ACGGA	1 cut(s)	483
XapI	RAATTY	1 cut(s)	169
XspI	CTAG	2 cut(s)	90, 234
Zsp2I	ATGCAT	2 cut(s)	387, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.