Paired amphipathic helix protein Sin3-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001 |
| rosa_laevigata | RLG00000021911 |
| rosa_multiflora | Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00081730 |
| rosa_rugosa | Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100 |
| rosa_samantha | Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500 |
| rosa_wichuraiana | Rw2G051060 Rw2G051110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 94 |
| AccB1I | GGYRCC | 2 cut(s) | 12, 94 |
| AclI | AACGTT | 1 cut(s) | 52 |
| AfaI | GTAC | 1 cut(s) | 96 |
| Alw21I | GWGCWC | 1 cut(s) | 159 |
| Asp718I | GGTACC | 1 cut(s) | 94 |
| BaeGI | GKGCMC | 1 cut(s) | 15 |
| BanI | GGYRCC | 2 cut(s) | 12, 94 |
| BauI | CACGAG | 1 cut(s) | 123 |
| Bbv12I | GWGCWC | 1 cut(s) | 159 |
| BccI | CCATC | 2 cut(s) | 2, 20 |
| BfaI | CTAG | 1 cut(s) | 178 |
| BfmI | CTRYAG | 1 cut(s) | 160 |
| BmiI | GGNNCC | 2 cut(s) | 14, 96 |
| BseSI | GKGCMC | 1 cut(s) | 15 |
| BshNI | GGYRCC | 2 cut(s) | 12, 94 |
| BsiHKAI | GWGCWC | 1 cut(s) | 159 |
| Bsp1286I | GDGCHC | 2 cut(s) | 15, 159 |
| BspLI | GGNNCC | 2 cut(s) | 14, 96 |
| BspT107I | GGYRCC | 2 cut(s) | 12, 94 |
| BssSI | CACGAG | 1 cut(s) | 123 |
| Bst2BI | CACGAG | 1 cut(s) | 123 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 163 |
| BstNSI | RCATGY | 1 cut(s) | 89 |
| BstSFI | CTRYAG | 1 cut(s) | 160 |
| BstSLI | GKGCMC | 1 cut(s) | 15 |
| Csp6I | GTAC | 1 cut(s) | 95 |
| CviAII | CATG | 1 cut(s) | 86 |
| CviJI | RGCY | 4 cut(s) | 5, 30, 73, 166 |
| CviKI_1 | RGCY | 4 cut(s) | 5, 30, 73, 166 |
| CviQI | GTAC | 1 cut(s) | 95 |
| FaeI | CATG | 1 cut(s) | 89 |
| FaiI | YATR | 5 cut(s) | 62, 87, 135, 153, 162 |
| FatI | CATG | 1 cut(s) | 85 |
| FspBI | CTAG | 1 cut(s) | 178 |
| FspEI | CC | 9 cut(s) | 6, 12, 29, 60, 77, 87, 111, 120, 148 |
| Hin1II | CATG | 1 cut(s) | 89 |
| HincII | GTYRAC | 1 cut(s) | 106 |
| HindII | GTYRAC | 1 cut(s) | 106 |
| HinfI | GANTC | 1 cut(s) | 119 |
| Hpy166II | GTNNAC | 1 cut(s) | 106 |
| Hpy8I | GTNNAC | 1 cut(s) | 106 |
| HpyCH4IV | ACGT | 1 cut(s) | 52 |
| HpyCH4V | TGCA | 2 cut(s) | 40, 80 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 163 |
| HpySE526I | ACGT | 1 cut(s) | 52 |
| Hsp92II | CATG | 1 cut(s) | 89 |
| KpnI | GGTACC | 1 cut(s) | 98 |
| LpnPI | CCDG | 1 cut(s) | 60 |
| MaeI | CTAG | 1 cut(s) | 178 |
| MaeII | ACGT | 1 cut(s) | 52 |
| MfeI | CAATTG | 1 cut(s) | 41 |
| MhlI | GDGCHC | 2 cut(s) | 15, 159 |
| MluCI | AATT | 1 cut(s) | 41 |
| MlyI | GAGTC | 1 cut(s) | 113 |
| MnlI | CCTC | 1 cut(s) | 84 |
| MunI | CAATTG | 1 cut(s) | 41 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 163 |
| NlaIII | CATG | 1 cut(s) | 89 |
| NlaIV | GGNNCC | 2 cut(s) | 14, 96 |
| NspI | RCATGY | 1 cut(s) | 89 |
| PleI | GAGTC | 1 cut(s) | 113 |
| PpsI | GAGTC | 1 cut(s) | 113 |
| Psp1406I | AACGTT | 1 cut(s) | 52 |
| PspN4I | GGNNCC | 2 cut(s) | 14, 96 |
| RsaI | GTAC | 1 cut(s) | 96 |
| RsaNI | GTAC | 1 cut(s) | 95 |
| SchI | GAGTC | 1 cut(s) | 113 |
| SduI | GDGCHC | 2 cut(s) | 15, 159 |
| SetI | ASST | 3 cut(s) | 18, 55, 100 |
| SfcI | CTRYAG | 1 cut(s) | 160 |
| SgeI | CNNG | 6 cut(s) | 29, 59, 89, 98, 135, 137 |
| Sse9I | AATT | 1 cut(s) | 41 |
| SspMI | CTAG | 1 cut(s) | 178 |
| TaiI | ACGT | 1 cut(s) | 55 |
| TasI | AATT | 1 cut(s) | 41 |
| TspDTI | ATGAA | 1 cut(s) | 158 |
| XceI | RCATGY | 1 cut(s) | 89 |
| XspI | CTAG | 1 cut(s) | 178 |