Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Forward (+)

86772668 .. 86783053

Gene Structure 10386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG639300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4158 bp

ATGGAGAGAAGAAATGGGCCACCCCAACTCCAAGTACCAGGAGAAGGACGCGCGGTAGGTGAAGTAATAGCTACCGTTGGAGTAGCTACTGTTGGAGTAGGTGCCTCTCAGAAATTGACGACGAATGATGCTCTTACATACCTCAAAGAAGTGAAGGACATGTTTCAAGACCAAAGAGAAAAGTATGATATGTTTCTTGAGGTCATGAAGGATTTCAAGGCTCAAAGAACTGACACGACAGGTGTCATTGCAAGAGTAAAGGAACTGTTTAAAGGGCATACCAAGTTAATTTTGGGGTTTAATACCTTCTTGCCAAAGGGTTATGAGATCACTCTTGAGGAAGTGGAACCAAAAAAGACTGTTGAGTTCGAAGAAGCTATCAGTTTTGTAAACAAGATCAAGAAACGTTTCCAAAATGATGAGCAAGTATACAAGTCATTCTTAGACATACTGAATATGTATCGAAAGGAGCACAAGGACATAAATGAGGTTTACCAGGAGGTTGCTTCTCTATTTGATGACCAACCAGATTTGCTGGATGAGTTCACCAGATTTTTACCAGATACGTCAGCAACAACTTCAACTCATCAGGGGCAATATGGCCGCAATGCATATCCCCGTTTTAATGAGCGGAGCTCTGCTACACCAACTTTGCGGCCAATGCCTATTGACAAGCAACGTAGGCGGGATAAGATTACTTCTCATGGTGATCATGATATTAGTGTTGATCGTCCTGAGCTAGATGATGACAAAGGAATGATGAAAGTACTGAAGGAGCAGAAAAAGCGTTTTCCTGAGAAGGAGAATAGGGATAGGAGAATTCGTGACCATGAAGATAGAGAAGTAGAGACTGATAACAACAGGGACTACAACTTGCAGCGTTTTCCAGAGAAAAGGAAATCTTCCAGGAAGGTTGAAGGTTTTGGAGCGAATGCTAACTTTGCTCCTTATGATGACAAAGATACCTTGAAGAGTAAGTACAGCCAGGCATTCGGTTTCTGTGACAAAGTTAAGGAGCGCTTGTGCAGCCAAGATGACTACCAGGCATTTTTGAAGTGCCTTCACATTTATAGCAATGGCATTATTAAAAGGAATGATTTACAAAATTTGGTGACTGATTTATTGGGGAAGTATCCAGATCTTATGGACGAATTTAATGATTTCTTGGAGCGCTGTGAGAATATTGATGGGTTCCTTGCTGGTGTAATGAGAAAATCTCTGAGTAGTGATGGTCATTTATCGCGATCAGTGAAGGTAGAGGACAAAGACAAGGAGCCAAAGCGTGAAATGGAGGGAGTTAAAGAAAAGGAAAGATACAGGGAGAAGTATTGGGCGAAATCTATTCAAGAGCTTGACCTCTCTAACTGTGAACGCTGTACTCCAAGCTATCGCCTTCTTCCAGAAGATTATCCAATACCCTCAGCAAGCCAGAGATCAGAACTTGCTGCTCAGGTCTTGAATGACCATTGGGTATCTGTGACTTCAGGAAGTGAAGATTATTCTTTTAAACACATGCGCAGAAATCAATATGAAGAAAGTCTTTTCCGTTGTGAAGATGATAGGTTTGAGCTAGATATGTTGTTGGAGTCAGTAAGCTCAACTTCTAAGCGAGCAGAGGAACTGTTGAACAGCATGAATGAAAATAAACTCAGTATGGAAACTCAAATTCATATCGAAGACCACTTTACTGCTCTAAACTTAAGGTGCATTGAACGTTTATATGGTGACCATGGTCTTGATGTGATGGACATACTGCGGAAAAGTCCAACGCTCGCTCTGCCAGTTATATTAACTCGCCTGAAACAGAAACAAGAGGAATGGACAAGATGTAGAGCGGATTTCAACAAGGTTTGGGCTGATATATATGCCAAAAACCATTACAAATCACTTGATCACCGAAGCTTTTATTTCAAGCAACAAGATTCAAAGAACTTGAGCAGCAAATATTTGGTGGCTGAGATCAAGGAATTGAAAGAGAAAAAACAGATAGAGGACGATATTCTTCTGGCTGTTGCTGCTGGAAACAGGCAATCTATAGTTCCACATCTGGAGTATGAATACCTTGATATCAGCATTCATGAGGACTTGTATAAACTTGTCGAATATTCATGTGACGAGCTTAGCTCAACAAAAGAACAGTTAAATAAGGCTATGAGACTTTATACTACCTTTTTGGAGCCAATGTTGGGCATTCCTTCTCGGCCTCATGGTTCAGAGGATGATGAAGATGTGGACAAAGCTAGGAAGGGCGCTATGAATTGTACTGCATCAAGCAATGGAGAAAGTGATGGAAGTCCCGGTGGTGAGACTACCATGGTAAATTTTAAGCAGCCTAAATCTGGGGGTAATGAAGATGAAAATGCTTTAGCAGATGTGGCAAGTTCTAGGAATAGTTTGGCTAATGGGGATACCTTAGCCAAAGAAGATGGCAGTTGCAATGCAGATAATGCCTGCAGGGATGATTCAATGTGTAATAACATTAGGGTAGAGAAAGAAGTCAAAGAACAGAAGAATATTAGTATCCCTGATAAAATGCATGGGTCAAGTAAACCGATTGCCTCCATTGATCGAGTAGGCAATTCCAATGCATCATTTGCAGTTGGAGGAGAAAATAACCATGGAAGAATCAGCTTGGAAGTGACATCAGGGTCTGTTGCAACTACCTCAAGACCCTACGACTCCATTAGTGAAAATGAGCAATCAAAGAAAACTAATGCTGATCCTGCTGTTCCTTCATCAGAGGGTGGTGATATTGTAAAACCTGCTTCATTTGGTAATGGGGTGTTTACGGAAAGCTCTAAAGTCAACAGTCATCATGAAGAGTCTGTTGGGCCCTCTAAAATTGAGAAGGAAGAAGGTGAATTATCACCGGTCGGTGATTATGGGGAGGATAACTTCGTTGTCTCTGGAGACGCTGGGGTGCAGGCTTTGCCTAAGGAAAACCATGGTGTTGAAAGACAATATCAATCTGGAAACGGGGAAGAAATTTGCTCTCAGGATGCTGGGGAAAATGATGCAGATGCTGATGATGAAAACAGTGAAAATGTTTCTGAGGCTGGTGAAGATGCCTCTGGCAGTGAGACAGCTGGTGATGAGTGTTCCCGAGAAGAGCATGGAGAGGAGGAGGATGCTGAACATGATGACGTTGATGGTAAGGCTGAGAGTGAAGGTGAGGCTGAAGGGATGGCTGACGGGCACCTTGTTGGAGATGGCTGTTCCTTGCAATTGCCAGAACGTTTTCTTATGTCTGTGAAGCCTCTTGCAAAGCATGTATCGGCACCTTTAGTTGATGAAAAGAAAGACTCTCGTGTTTTTTATGGAAACGATAACTTCTATGTGCTCTATAGGCTTCATCAAATTTTATACGAAAGGATTTTATCTGCAAAATCAAATTCAGTAGGAGCAGAAACTAAGTGGAGAACTTCCAAGGATGGCAACCCTCCGGATCTTTATGGCAGGTTTATGGGTGCACTGTACAATTTGCTTGATGGATCTGCTGATAATGCAAAATTTGAGGATGAGTGCCGAGCTATTATTGGAAATCAGTCGTACATCTTATTCACGTTGGACAAGTTAATATATAAATTTGTTAAACAGCTTCAAACGGTTGCAACTGATGAGATGGACAATAAGCTTCTTCAGTTATATGAATATGAAAAGTCTCGGAAAAAAGGAAAGCTAATTGATTCTGTCTATTTTGAAAACACACGTGTCCTTGTTCACGAGGAGAACATTTACAGATTGGAATTCTTCTCTGCACCCTCCCGGCTGTCCATCCAGCTGATGGACAGCGTGAGTGAAAAGCCTGAGGCGTCGGCAGTTTCTATGGAACCTAATTTTTCATCTTATCTGCACAATGATTTCCTGTCACTTTATCCTGGCAAAAAGGAGCCACATGGAATTACCCTGCAGAGAAACAAGCGCAAATATGCAGGGCAAGATGAATCCTCGGCGTTTTCCAATGCCATGGAGGGTGTTCAATTAGTCAATGGGTTGGAGTGTAAAATTGCTTGCAACTCATCCAAGATCTCTTATGTTCTCGACACAGAAGATTACTTCTTCCGTATGAGAAGGAAAAGGAGAAAGTCAGAGTCCAGATCACCATATTGTGATCAGACGAGGGTACAGCGGTTCCACAAATTCTTGTCCGTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1385

Amino Acids

157.33

Weight (kDa)

5.19

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	60 - 104	3e-17	Paired amphipathic helix repeat
PAH	PF02671	142 - 186	4.4e-18	Paired amphipathic helix repeat
PAH	PF02671	346 - 389	5.9e-15	Paired amphipathic helix repeat
Sin3_corepress	PF08295	457 - 549	2.3e-34	Sin3 family co-repressor
Sin3a_C	PF16879	1105 - 1353	8.1e-47	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2647
Acc16I	TGCGCA	1 cut(s)	1517
Acc36I	ACCTGC	2 cut(s)	2770, 3447
AccB1I	GGYRCC	3 cut(s)	101, 3195, 3277
AccB7I	CCANNNNNTGG	1 cut(s)	3784
AccBSI	CCGCTC	2 cut(s)	631, 1835
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	3 cut(s)	51, 53, 1243
AccIII	TCCGGA	1 cut(s)	3442
AciI	CCGC	8 cut(s)	53, 604, 631, 655, 685, 1756, 1835, 4129
AclI	AACGTT	3 cut(s)	406, 1714, 3235
AclWI	GGATC	3 cut(s)	2714, 3453, 3499
AcoI	YGGCCR	2 cut(s)	601, 656
AcuI	CTGAAG	4 cut(s)	791, 1467, 3198, 3623
AcvI	CACGTG	1 cut(s)	3710
AcyI	GRCGYC	1 cut(s)	3812
AfaI	GTAC	8 cut(s)	36, 768, 980, 1378, 2263, 3476, 3551, 4125
AfeI	AGCGCT	2 cut(s)	1019, 1172
AfiI	CCNNNNNNNGG	4 cut(s)	44, 2186, 2339, 3784
AflII	CTTAAG	1 cut(s)	1699
AflIII	ACRYGT	3 cut(s)	159, 3707, 3709
AgeI	ACCGGT	1 cut(s)	2869
AjnI	CCWGG	6 cut(s)	37, 495, 905, 984, 1041, 3877
AjuI	GAANNNNNNNTTGG	2 cut(s)	2811, 2843
Alw21I	GWGCWC	4 cut(s)	474, 638, 3342, 3472
Alw26I	GTCTC	7 cut(s)	842, 2149, 2300, 2904, 2908, 3074, 3666
Alw44I	GTGCAC	1 cut(s)	3468
AlwI	GGATC	3 cut(s)	2714, 3453, 3499
AlwNI	CAGNNNCTG	2 cut(s)	2651, 3023
Ama87I	CYCGRG	1 cut(s)	3102
Aor13HI	TCCGGA	1 cut(s)	3442
Aor51HI	AGCGCT	2 cut(s)	1019, 1172
AoxI	GGCC	5 cut(s)	17, 601, 656, 2201, 2831
ApaI	GGGCCC	1 cut(s)	2835
ApaLI	GTGCAC	1 cut(s)	3468
ApeKI	GCWGC	6 cut(s)	877, 1026, 1445, 1938, 2015, 2329
AsiGI	ACCGGT	1 cut(s)	2869
Asp700I	GAANNNNTTC	3 cut(s)	212, 407, 3237
AspLEI	GCGC	6 cut(s)	53, 1020, 1173, 1518, 2252, 3924
AspS9I	GGNCC	3 cut(s)	17, 2831, 2832
AsuC2I	CCSGG	2 cut(s)	2298, 3766
AsuII	TTCGAA	1 cut(s)	369
AvaI	CYCGRG	1 cut(s)	3102
AxyI	CCTNAGG	2 cut(s)	2934, 3807
BaeGI	GKGCMC	3 cut(s)	2835, 3198, 3472
BaeI	ACNNNNGTAYC	2 cut(s)	4115, 4148
BanI	GGYRCC	3 cut(s)	101, 3195, 3277
BanII	GRGCYC	2 cut(s)	638, 2835
BarI	GAAGNNNNNNTAC	2 cut(s)	962, 994
BauI	CACGAG	2 cut(s)	3306, 3722
BbrPI	CACGTG	1 cut(s)	3710
BbsI	GAAGAC	1 cut(s)	1683
Bbv12I	GWGCWC	4 cut(s)	474, 638, 3342, 3472
BbvCI	CCTCAGC	1 cut(s)	1420
BbvI	GCAGC	6 cut(s)	889, 1038, 1432, 1950, 2002, 2341
BciT130I	CCWGG	6 cut(s)	39, 497, 907, 986, 1043, 3879
BciVI	GTATCC	3 cut(s)	1143, 2401, 2531
BclI	TGATCA	3 cut(s)	709, 1891, 4111
BcnI	CCSGG	2 cut(s)	2298, 3766
BcoDI	GTCTC	7 cut(s)	842, 2149, 2300, 2904, 2908, 3074, 3666
BfaI	CTAG	4 cut(s)	740, 1571, 2241, 2385
BfmI	CTRYAG	4 cut(s)	2034, 2452, 3343, 3908
BfoI	RGCGCY	3 cut(s)	1021, 1174, 2253
BfrI	CTTAAG	1 cut(s)	1699
BfuAI	ACCTGC	2 cut(s)	2770, 3447
BfuI	GTATCC	3 cut(s)	1143, 2401, 2531
BglII	AGATCT	2 cut(s)	1138, 4026
BisI	GCNGC	8 cut(s)	604, 656, 878, 1027, 1446, 1939, 2016, 2330
BlpI	GCTNAGC	1 cut(s)	2120
BlsI	GCNGC	8 cut(s)	605, 657, 879, 1028, 1447, 1940, 2017, 2331
BmcAI	AGTACT	1 cut(s)	768
Bme1390I	CCNGG	8 cut(s)	39, 497, 907, 986, 1043, 2298, 3766, 3879
BmeT110I	CYCGRG	1 cut(s)	3102
BmgT120I	GGNCC	3 cut(s)	17, 2831, 2832
BmrFI	CCNGG	8 cut(s)	39, 497, 907, 986, 1043, 2298, 3766, 3879
BmsI	GCATC	8 cut(s)	118, 2276, 2597, 2989, 3004, 3010, 3055, 3118
BoxI	GACNNNNGTC	2 cut(s)	242, 1731
BpiI	GAAGAC	1 cut(s)	1683
BplI	GAGNNNNNCTC	6 cut(s)	620, 652, 1201, 1233, 2108, 2140
BpmI	CTGGAG	2 cut(s)	2069, 2928
Bpu10I	CCTNAGC	4 cut(s)	735, 1420, 1449, 2413
Bpu1102I	GCTNAGC	1 cut(s)	2120
Bpu14I	TTCGAA	1 cut(s)	369
BpuEI	CTTGAG	4 cut(s)	218, 356, 1954, 2650
BpuMI	CCSGG	2 cut(s)	2298, 3766
BsaAI	YACGTR	1 cut(s)	3710
BsaHI	GRCGYC	1 cut(s)	3812
BsaJI	CCNNGG	7 cut(s)	1729, 2313, 2617, 2944, 3426, 3948, 3966
BsaWI	WCCGGW	2 cut(s)	2869, 3442
BsaXI	ACNNNNNCTCC	8 cut(s)	12, 42, 808, 838, 1007, 1037, 2168, 2198
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 2186, 2339, 3784
Bse118I	RCCGGY	1 cut(s)	2869
Bse1I	ACTGG	1 cut(s)	1781
Bse21I	CCTNAGG	2 cut(s)	2934, 3807
Bse3DI	GCAATG	5 cut(s)	246, 613, 1081, 2281, 2443
BseAI	TCCGGA	1 cut(s)	3442
BseBI	CCWGG	6 cut(s)	39, 497, 907, 986, 1043, 3879
BseDI	CCNNGG	7 cut(s)	1729, 2313, 2617, 2944, 3426, 3948, 3966
BseLI	CCNNNNNNNGG	4 cut(s)	44, 2186, 2339, 3784
BseMI	GCAATG	5 cut(s)	246, 613, 1081, 2281, 2443
BseNI	ACTGG	1 cut(s)	1781
BseRI	GAGGAG	4 cut(s)	2619, 3134, 3137, 3740
BseSI	GKGCMC	3 cut(s)	2835, 3198, 3472
BseXI	GCAGC	6 cut(s)	889, 1038, 1432, 1950, 2002, 2341
BseYI	CCCAGC	2 cut(s)	2915, 3002
BsgI	GTGCAG	4 cut(s)	1045, 2942, 3741, 3836
Bsh1236I	CGCG	3 cut(s)	51, 53, 1243
Bsh1285I	CGRYCG	1 cut(s)	2874
BshFI	GGCC	5 cut(s)	19, 603, 658, 2203, 2833
BshNI	GGYRCC	3 cut(s)	101, 3195, 3277
BshTI	ACCGGT	1 cut(s)	2869
BsiEI	CGRYCG	1 cut(s)	2874
BsiHKAI	GWGCWC	4 cut(s)	474, 638, 3342, 3472
BsiHKCI	CYCGRG	1 cut(s)	3102
BsiSI	CCGG	4 cut(s)	2298, 2870, 3443, 3766
BslFI	GGGAC	2 cut(s)	878, 2280
BslI	CCNNNNNNNGG	4 cut(s)	44, 2186, 2339, 3784
BsmAI	GTCTC	7 cut(s)	842, 2149, 2300, 2904, 2908, 3074, 3666
BsmBI	CGTCTC	1 cut(s)	2904
BsmFI	GGGAC	2 cut(s)	878, 2280
BsmI	GAATGC	4 cut(s)	937, 989, 2073, 2190
BsnI	GGCC	5 cut(s)	19, 603, 658, 2203, 2833
BsoBI	CYCGRG	1 cut(s)	3102
Bsp119I	TTCGAA	1 cut(s)	369
Bsp120I	GGGCCC	1 cut(s)	2831
Bsp1286I	GDGCHC	6 cut(s)	474, 638, 2835, 3198, 3342, 3472
Bsp13I	TCCGGA	1 cut(s)	3442
Bsp1407I	TGTACA	1 cut(s)	3474
Bsp1720I	GCTNAGC	1 cut(s)	2120
Bsp19I	CCATGG	5 cut(s)	1729, 2313, 2617, 2944, 3966
Bsp68I	TCGCGA	1 cut(s)	1243
BspACI	CCGC	8 cut(s)	53, 604, 631, 655, 685, 1756, 1835, 4129
BspANI	GGCC	5 cut(s)	19, 603, 658, 2203, 2833
BspEI	TCCGGA	1 cut(s)	3442
BspFNI	CGCG	3 cut(s)	51, 53, 1243
BspHI	TCATGA	4 cut(s)	204, 712, 2077, 2815
BspMAI	CTGCAG	2 cut(s)	2456, 3912
BspMI	ACCTGC	2 cut(s)	2770, 3447
BspPI	GGATC	3 cut(s)	2714, 3453, 3499
BspQI	GCTCTTC	1 cut(s)	3102
BspT104I	TTCGAA	1 cut(s)	369
BspT107I	GGYRCC	3 cut(s)	101, 3195, 3277
BspTI	CTTAAG	1 cut(s)	1699
BsrBI	CCGCTC	2 cut(s)	631, 1835
BsrDI	GCAATG	5 cut(s)	246, 613, 1081, 2281, 2443
BsrFI	RCCGGY	1 cut(s)	2869
BsrGI	TGTACA	1 cut(s)	3474
BsrI	ACTGG	1 cut(s)	1781
BssAI	RCCGGY	1 cut(s)	2869
BssECI	CCNNGG	7 cut(s)	1729, 2313, 2617, 2944, 3426, 3948, 3966
BssNAI	GTATAC	1 cut(s)	430
BssNI	GRCGYC	1 cut(s)	3812
BssSI	CACGAG	2 cut(s)	3306, 3722
BssT1I	CCWWGG	6 cut(s)	1729, 2313, 2617, 2944, 3426, 3966
Bst1107I	GTATAC	1 cut(s)	430
Bst2BI	CACGAG	2 cut(s)	3306, 3722
Bst2UI	CCWGG	6 cut(s)	39, 497, 907, 986, 1043, 3879
Bst6I	CTCTTC	3 cut(s)	965, 2814, 3102
BstACI	GRCGYC	1 cut(s)	3812
BstAFI	CTTAAG	1 cut(s)	1699
BstAPI	GCANNNNNTGC	3 cut(s)	2447, 2594, 2929
BstAUI	TGTACA	1 cut(s)	3474
BstBAI	YACGTR	1 cut(s)	3710
BstBI	TTCGAA	1 cut(s)	369
BstC8I	GCNNGC	6 cut(s)	1426, 1611, 1773, 2452, 2925, 4012
BstDSI	CCRYGG	5 cut(s)	1729, 2313, 2617, 2944, 3966
BstEII	GGTNACC	1 cut(s)	1724
BstFNI	CGCG	3 cut(s)	51, 53, 1243
BstH2I	RGCGCY	3 cut(s)	1021, 1174, 2253
BstHHI	GCGC	6 cut(s)	53, 1020, 1173, 1518, 2252, 3924
BstMAI	GTCTC	7 cut(s)	842, 2149, 2300, 2904, 2908, 3074, 3666
BstMCI	CGRYCG	1 cut(s)	2874
BstNI	CCWGG	6 cut(s)	39, 497, 907, 986, 1043, 3879
BstNSI	RCATGY	3 cut(s)	163, 1516, 3272
BstPAI	GACNNNNGTC	2 cut(s)	242, 1731
BstPI	GGTNACC	1 cut(s)	1724
BstSCI	CCNGG	8 cut(s)	37, 495, 905, 984, 1041, 2296, 3764, 3877
BstSFI	CTRYAG	4 cut(s)	2034, 2452, 3343, 3908
BstSLI	GKGCMC	3 cut(s)	2835, 3198, 3472
BstUI	CGCG	3 cut(s)	51, 53, 1243
BstV1I	GCAGC	6 cut(s)	889, 1038, 1432, 1950, 2002, 2341
BstV2I	GAAGAC	1 cut(s)	1683
BstX2I	RGATCY	4 cut(s)	1138, 3445, 3491, 4026
BstXI	CCANNNNNNTGG	1 cut(s)	3967
BstYI	RGATCY	4 cut(s)	1138, 3445, 3491, 4026
BstZ17I	GTATAC	1 cut(s)	430
Bsu36I	CCTNAGG	2 cut(s)	2934, 3807
BsuI	GTATCC	3 cut(s)	1143, 2401, 2531
BsuRI	GGCC	5 cut(s)	19, 603, 658, 2203, 2833
BtgI	CCRYGG	5 cut(s)	1729, 2313, 2617, 2944, 3966
BtsI	GCAGTG	1 cut(s)	3082
BtsIMutI	CAGTG	4 cut(s)	1254, 3043, 3082, 3470
BtuMI	TCGCGA	1 cut(s)	1243
BveI	ACCTGC	2 cut(s)	2770, 3447
Cac8I	GCNNGC	6 cut(s)	1426, 1611, 1773, 2452, 2925, 4012
CaiI	CAGNNNCTG	2 cut(s)	2651, 3023
CciI	TCATGA	4 cut(s)	204, 712, 2077, 2815
CfoI	GCGC	6 cut(s)	53, 1020, 1173, 1518, 2252, 3924
Cfr10I	RCCGGY	1 cut(s)	2869
Cfr13I	GGNCC	3 cut(s)	17, 2831, 2832
CseI	GACGC	3 cut(s)	57, 2921, 3801
Csp6I	GTAC	8 cut(s)	35, 767, 979, 1377, 2262, 3475, 3550, 4124
CspAI	ACCGGT	1 cut(s)	2869
CviQI	GTAC	8 cut(s)	35, 767, 979, 1377, 2262, 3475, 3550, 4124
DraI	TTTAAA	2 cut(s)	271, 1507
DrdI	GACNNNNNNGTC	1 cut(s)	2647
DseDI	GACNNNNNNGTC	1 cut(s)	2647
EaeI	YGGCCR	2 cut(s)	601, 656
Eam1104I	CTCTTC	3 cut(s)	965, 2814, 3102
EarI	CTCTTC	3 cut(s)	965, 2814, 3102
Ecl136II	GAGCTC	1 cut(s)	636
Eco130I	CCWWGG	6 cut(s)	1729, 2313, 2617, 2944, 3426, 3966
Eco24I	GRGCYC	2 cut(s)	638, 2835
Eco32I	GATATC	1 cut(s)	2068
Eco47III	AGCGCT	2 cut(s)	1019, 1172
Eco53kI	GAGCTC	1 cut(s)	636
Eco57I	CTGAAG	4 cut(s)	791, 1467, 3198, 3623
Eco72I	CACGTG	1 cut(s)	3710
Eco81I	CCTNAGG	2 cut(s)	2934, 3807
Eco88I	CYCGRG	1 cut(s)	3102
Eco91I	GGTNACC	1 cut(s)	1724
EcoICRI	GAGCTC	1 cut(s)	636
EcoO109I	RGGNCCY	1 cut(s)	2832
EcoO65I	GGTNACC	1 cut(s)	1724
EcoRI	GAATTC	2 cut(s)	819, 3746
EcoRII	CCWGG	6 cut(s)	37, 495, 905, 984, 1041, 3877
EcoRV	GATATC	1 cut(s)	2068
EcoT14I	CCWWGG	6 cut(s)	1729, 2313, 2617, 2944, 3426, 3966
EcoT22I	ATGCAT	3 cut(s)	613, 2538, 2590
EcoT38I	GRGCYC	2 cut(s)	638, 2835
ErhI	CCWWGG	6 cut(s)	1729, 2313, 2617, 2944, 3426, 3966
Esp3I	CGTCTC	1 cut(s)	2904
FaqI	GGGAC	2 cut(s)	878, 2280
FauI	CCCGC	1 cut(s)	678
FbaI	TGATCA	3 cut(s)	709, 1891, 4111
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	8 cut(s)	604, 656, 878, 1027, 1446, 1939, 2016, 2330
FriOI	GRGCYC	2 cut(s)	638, 2835
Fsp4HI	GCNGC	8 cut(s)	604, 656, 878, 1027, 1446, 1939, 2016, 2330
FspBI	CTAG	4 cut(s)	740, 1571, 2241, 2385
FspI	TGCGCA	1 cut(s)	1517
GlaI	GCGC	6 cut(s)	52, 1019, 1172, 1517, 2251, 3923
GluI	GCNGC	8 cut(s)	604, 656, 878, 1027, 1446, 1939, 2016, 2330
GsaI	CCCAGC	2 cut(s)	2919, 3006
GsuI	CTGGAG	2 cut(s)	2069, 2928
HaeII	RGCGCY	3 cut(s)	1021, 1174, 2253
HaeIII	GGCC	5 cut(s)	19, 603, 658, 2203, 2833
HapII	CCGG	4 cut(s)	2298, 2870, 3443, 3766
HgaI	GACGC	3 cut(s)	57, 2921, 3801
HhaI	GCGC	6 cut(s)	53, 1020, 1173, 1518, 2252, 3924
Hin1I	GRCGYC	1 cut(s)	3812
Hin6I	GCGC	6 cut(s)	51, 1018, 1171, 1516, 2250, 3922
HinP1I	GCGC	6 cut(s)	51, 1018, 1171, 1516, 2250, 3922
HincII	GTYRAC	1 cut(s)	2806
HindII	GTYRAC	1 cut(s)	2806
HindIII	AAGCTT	2 cut(s)	1900, 3632
HpaII	CCGG	4 cut(s)	2298, 2870, 3443, 3766
Hpy188I	TCNGA	9 cut(s)	111, 1221, 1438, 2215, 2740, 3052, 3666, 4090, 4116
Hpy99I	CGWCG	2 cut(s)	124, 3817
HpyCH4IV	ACGT	8 cut(s)	406, 566, 679, 1714, 3144, 3235, 3563, 3709
HpySE526I	ACGT	8 cut(s)	406, 566, 679, 1714, 3144, 3235, 3563, 3709
Hsp92I	GRCGYC	1 cut(s)	3812
HspAI	GCGC	6 cut(s)	51, 1018, 1171, 1516, 2250, 3922
Kpn2I	TCCGGA	1 cut(s)	3442
Ksp22I	TGATCA	3 cut(s)	709, 1891, 4111
LguI	GCTCTTC	1 cut(s)	3102
Lsp1109I	GCAGC	6 cut(s)	889, 1038, 1432, 1950, 2002, 2341
LweI	GCATC	8 cut(s)	118, 2276, 2597, 2989, 3004, 3010, 3055, 3118
MaeI	CTAG	4 cut(s)	740, 1571, 2241, 2385
MaeII	ACGT	8 cut(s)	406, 566, 679, 1714, 3144, 3235, 3563, 3709
MaeIII	GTNAC	8 cut(s)	824, 1001, 1111, 1477, 1724, 2111, 2638, 3867
MbiI	CCGCTC	2 cut(s)	631, 1835
MfeI	CAATTG	1 cut(s)	3224
MflI	RGATCY	4 cut(s)	1138, 3445, 3491, 4026
MhlI	GDGCHC	6 cut(s)	474, 638, 2835, 3198, 3342, 3472
MlyI	GAGTC	5 cut(s)	1595, 2672, 2831, 3296, 4100
MmeI	TCCRAC	8 cut(s)	58, 73, 1563, 1790, 2581, 3184, 3546, 3975
Mph1103I	ATGCAT	3 cut(s)	613, 2538, 2590
MroI	TCCGGA	1 cut(s)	3442
MroXI	GAANNNNTTC	3 cut(s)	212, 407, 3237
MspA1I	CMGCKG	3 cut(s)	3086, 3781, 4129
MspCI	CTTAAG	1 cut(s)	1699
MspI	CCGG	4 cut(s)	2298, 2870, 3443, 3766
MspR9I	CCNGG	8 cut(s)	39, 497, 907, 986, 1043, 2298, 3766, 3879
MunI	CAATTG	1 cut(s)	3224
Mva1269I	GAATGC	4 cut(s)	937, 989, 2073, 2190
MvaI	CCWGG	6 cut(s)	39, 497, 907, 986, 1043, 3879
MvnI	CGCG	3 cut(s)	51, 53, 1243
NciI	CCSGG	2 cut(s)	2298, 3766
NcoI	CCATGG	5 cut(s)	1729, 2313, 2617, 2944, 3966
NmeAIII	GCCGAG	3 cut(s)	2179, 3551, 3929
NmuCI	GTSAC	8 cut(s)	824, 1001, 1111, 1477, 1724, 2111, 2638, 3867
NruI	TCGCGA	1 cut(s)	1243
NsbI	TGCGCA	1 cut(s)	1517
NsiI	ATGCAT	3 cut(s)	613, 2538, 2590
NspI	RCATGY	3 cut(s)	163, 1516, 3272
NspV	TTCGAA	1 cut(s)	369
PagI	TCATGA	4 cut(s)	204, 712, 2077, 2815
PciI	ACATGT	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	3102
PctI	GAATGC	4 cut(s)	937, 989, 2073, 2190
PdmI	GAANNNNTTC	3 cut(s)	212, 407, 3237
PfeI	GAWTC	5 cut(s)	1922, 2462, 2625, 3686, 3944
PflMI	CCANNNNNTGG	1 cut(s)	3784
PfoI	TCCNGGA	1 cut(s)	905
PinAI	ACCGGT	1 cut(s)	2869
PkrI	GCNGC	8 cut(s)	605, 657, 879, 1028, 1447, 1940, 2017, 2331
PleI	GAGTC	5 cut(s)	1594, 2672, 2830, 3296, 4099
PmaCI	CACGTG	1 cut(s)	3710
PmlI	CACGTG	1 cut(s)	3710
PpsI	GAGTC	5 cut(s)	1594, 2672, 2830, 3296, 4099
Ppu21I	YACGTR	1 cut(s)	3710
PscI	ACATGT	1 cut(s)	159
PshAI	GACNNNNGTC	2 cut(s)	242, 1731
Psp124BI	GAGCTC	1 cut(s)	638
Psp1406I	AACGTT	3 cut(s)	406, 1714, 3235
Psp6I	CCWGG	6 cut(s)	37, 495, 905, 984, 1041, 3877
PspCI	CACGTG	1 cut(s)	3710
PspEI	GGTNACC	1 cut(s)	1724
PspFI	CCCAGC	2 cut(s)	2915, 3002
PspGI	CCWGG	6 cut(s)	37, 495, 905, 984, 1041, 3877
PspOMI	GGGCCC	1 cut(s)	2831
PspPI	GGNCC	3 cut(s)	17, 2831, 2832
PstI	CTGCAG	2 cut(s)	2456, 3912
PstNI	CAGNNNCTG	2 cut(s)	2651, 3023
PsuI	RGATCY	4 cut(s)	1138, 3445, 3491, 4026
PvuII	CAGCTG	2 cut(s)	3086, 3781
RruI	TCGCGA	1 cut(s)	1243
RsaI	GTAC	8 cut(s)	36, 768, 980, 1378, 2263, 3476, 3551, 4125
RsaNI	GTAC	8 cut(s)	35, 767, 979, 1377, 2262, 3475, 3550, 4124
SacI	GAGCTC	1 cut(s)	638
SapI	GCTCTTC	1 cut(s)	3102
SatI	GCNGC	8 cut(s)	604, 656, 878, 1027, 1446, 1939, 2016, 2330
Sau96I	GGNCC	3 cut(s)	17, 2831, 2832
SbfI	CCTGCAGG	1 cut(s)	2456
ScaI	AGTACT	1 cut(s)	768
SchI	GAGTC	5 cut(s)	1595, 2672, 2831, 3296, 4100
ScrFI	CCNGG	8 cut(s)	39, 497, 907, 986, 1043, 2298, 3766, 3879
SdaI	CCTGCAGG	1 cut(s)	2456
SduI	GDGCHC	6 cut(s)	474, 638, 2835, 3198, 3342, 3472
SfaNI	GCATC	8 cut(s)	118, 2276, 2597, 2989, 3004, 3010, 3055, 3118
SfcI	CTRYAG	4 cut(s)	2034, 2452, 3343, 3908
SfuI	TTCGAA	1 cut(s)	369
SmlI	CTYRAG	5 cut(s)	197, 335, 1699, 1933, 2665
SmoI	CTYRAG	5 cut(s)	197, 335, 1699, 1933, 2665
Sse8387I	CCTGCAGG	1 cut(s)	2456
SsiI	CCGC	8 cut(s)	53, 604, 631, 655, 685, 1756, 1835, 4129
SspI	AATATT	4 cut(s)	1183, 1946, 2105, 2515
SspMI	CTAG	4 cut(s)	740, 1571, 2241, 2385
SstI	GAGCTC	1 cut(s)	638
StyD4I	CCNGG	8 cut(s)	37, 495, 905, 984, 1041, 2296, 3764, 3877
StyI	CCWWGG	6 cut(s)	1729, 2313, 2617, 2944, 3426, 3966
TaiI	ACGT	8 cut(s)	409, 569, 682, 1717, 3147, 3238, 3566, 3712
TaqI	TCGA	6 cut(s)	369, 463, 1674, 2100, 2569, 4041
TatI	WGTACW	5 cut(s)	766, 978, 1376, 2261, 3474
TauI	GCSGC	2 cut(s)	606, 658
TfiI	GAWTC	5 cut(s)	1922, 2462, 2625, 3686, 3944
TscAI	CASTG	4 cut(s)	1254, 3043, 3082, 3477
TseFI	GTSAC	8 cut(s)	824, 1001, 1111, 1477, 1724, 2111, 2638, 3867
TseI	GCWGC	6 cut(s)	877, 1026, 1445, 1938, 2015, 2329
Tsp45I	GTSAC	8 cut(s)	824, 1001, 1111, 1477, 1724, 2111, 2638, 3867
TspGWI	ACGGA	4 cut(s)	1535, 2804, 4052, 4138
TspRI	CASTG	4 cut(s)	1254, 3043, 3082, 3477
Van91I	CCANNNNNTGG	1 cut(s)	3784
Vha464I	CTTAAG	1 cut(s)	1699
VneI	GTGCAC	1 cut(s)	3468
XceI	RCATGY	3 cut(s)	163, 1516, 3272
XcmI	CCANNNNNNNNNTGG	2 cut(s)	289, 3781
XmiI	GTMKAC	1 cut(s)	429
XmnI	GAANNNNTTC	3 cut(s)	212, 407, 3237
XspI	CTAG	4 cut(s)	740, 1571, 2241, 2385
ZrmI	AGTACT	1 cut(s)	768
Zsp2I	ATGCAT	3 cut(s)	613, 2538, 2590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.