Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8017160.1

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 537

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8017160.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ggtctgttgcaactacctcaagaccctacgactccattattgaaaatgagcagtcaaagaaaactagtactgacactgctgttccttcatcagagggtggtgatattgtaaaacctgcttcatttggtaatggggtgattacagaaagcactaaagtcaacagtcgtcatgaagaatctgttgggccctctaaaattgagaaggaagaaggtggattatcacctatcggtgattatggggaggataacttcgttgtctctggagacgctggggtgctggctttgcctaaggaaaaccatggtgttgaaaggcaatatcaatctggaaacggggaagaaatttgctctcaggatgctggggaaaatgatgcagacactgatgatgaaaacagtgaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

131

Amino Acids

13.78

Weight (kDa)

4.21

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	338
AfaI	GTAC	1 cut(s)	69
AgsI	TTSAA	2 cut(s)	43, 307
AhlI	ACTAGT	1 cut(s)	64
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
Alw26I	GTCTC	2 cut(s)	257, 261
AlwNI	CAGNNNCTG	1 cut(s)	376
AoxI	GGCC	1 cut(s)	184
ApaI	GGGCCC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	184, 185
AsuHPI	GGTGA	4 cut(s)	112, 147, 212, 241
AxyI	CCTNAGG	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	257, 261
BcuI	ACTAGT	1 cut(s)	64
BfaI	CTAG	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	123
BmcAI	AGTACT	1 cut(s)	69
BmgT120I	GGNCC	2 cut(s)	184, 185
BmiI	GGNNCC	1 cut(s)	186
BmsI	GCATC	2 cut(s)	342, 357
BpmI	CTGGAG	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	297
Bse21I	CCTNAGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	361
BseSI	GKGCMC	1 cut(s)	188
BseYI	CCCAGC	2 cut(s)	268, 355
BshFI	GGCC	1 cut(s)	186
BsmAI	GTCTC	2 cut(s)	257, 261
BsmBI	CGTCTC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	186
Bsp120I	GGGCCC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp19I	CCATGG	1 cut(s)	297
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	186
BspMI	ACCTGC	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	163, 391
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	2 cut(s)	287, 347
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	357
BstMAI	GTCTC	2 cut(s)	257, 261
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	188
Bsu36I	CCTNAGG	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	357
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	3 cut(s)	74, 374, 396
BveI	ACCTGC	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	278
CaiI	CAGNNNCTG	1 cut(s)	376
CciI	TCATGA	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	184, 185
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	2 cut(s)	169, 298
CviJI	RGCY	2 cut(s)	186, 280
CviKI_1	RGCY	2 cut(s)	186, 280
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	2 cut(s)	287, 347
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	188
Eco81I	CCTNAGG	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	2 cut(s)	172, 301
FaiI	YATR	3 cut(s)	170, 236, 299
FatI	CATG	2 cut(s)	168, 297
FokI	GGATG	1 cut(s)	364
FriOI	GRGCYC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	65
GsaI	CCCAGC	2 cut(s)	272, 359
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	186
HgaI	GACGC	1 cut(s)	274
Hin1II	CATG	2 cut(s)	172, 301
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	31, 175
HphI	GGTGA	4 cut(s)	112, 147, 212, 241
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	5 cut(s)	20, 169, 260, 323, 349
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	3 cut(s)	95, 195, 202
HpyCH4III	ACNGT	2 cut(s)	163, 391
HpyCH4V	TGCA	2 cut(s)	10, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	2 cut(s)	287, 347
Hsp92II	CATG	2 cut(s)	172, 301
LpnPI	CCDG	7 cut(s)	128, 245, 254, 262, 308, 334, 341
LweI	GCATC	2 cut(s)	342, 357
MaeI	CTAG	1 cut(s)	65
MboII	GAAGA	3 cut(s)	184, 217, 346
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	2 cut(s)	194, 338
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	4 cut(s)	27, 87, 198, 234
MwoI	GCNNNNNNNGC	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	297
NlaIII	CATG	2 cut(s)	172, 301
NlaIV	GGNNCC	1 cut(s)	186
PagI	TCATGA	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PspFI	CCCAGC	2 cut(s)	268, 355
PspN4I	GGNNCC	1 cut(s)	186
PspOMI	GGGCCC	1 cut(s)	184
PspPI	GGNCC	2 cut(s)	184, 185
PstNI	CAGNNNCTG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
Sau96I	GGNCC	2 cut(s)	184, 185
ScaI	AGTACT	1 cut(s)	69
SchI	GAGTC	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	4 cut(s)	19, 117, 213, 225
SfaNI	GCATC	2 cut(s)	342, 357
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
SpeI	ACTAGT	1 cut(s)	64
Sse9I	AATT	2 cut(s)	194, 338
SspMI	CTAG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	163, 391
TasI	AATT	2 cut(s)	194, 338
TatI	WGTACW	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	175
TscAI	CASTG	3 cut(s)	81, 381, 396
TspDTI	ATGAA	3 cut(s)	77, 110, 185
TspRI	CASTG	3 cut(s)	81, 381, 396
XapI	RAATTY	1 cut(s)	338
XspI	CTAG	1 cut(s)	65
ZrmI	AGTACT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.