Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Forward (+)

85055667 .. 85070526

Gene Structure 14860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG628600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1902 bp

ATGGTGTTGCCGGACTGGGTCTTGCGGCTGATCTGTGGAGGATACGGTCGTGGCTTTAGCGATGTGGTGGGTTTAGATCTGTTTCCAGGTGTCGGTGAAGGCTCGATGGCTTCGATTTCTGTGCGACGTGAGGCAATGGTCTGTGGAGATGAGGGCGGTCACGACACGTATCTACAAGTCGTCCAGGGAGATTTGGTGGCTGAGATCAAGGAATTAAAAGAGAAAAAACAGATAGAGGACGATATTCTTCTTGCTGTTGCTGCTGGAAACAGGCAATCTATAGTTCCACATCTGGAGTATGAATACCTTGATATCAGCATTCATGAGGACTTGTATAAACTTGTCGAATATTCATGTGAAGAGCTTAGCTCGACGAAAGAACAGTTGAATAAGGCTATGAGACTTTATACTACCTTTTTGGAGCCAATGTTGGGTATTCCTTCTCGGCCTCATGGTTCAGAGGATGATGAAGATGTGGACAAAGCTAGGAAGGGACCTATGAATTGTACTGCATCAAGCAATGGAGAAAGTGATGGAAGTCCTGGTGGTGAGACTACCATGGTAAATTTTAAGCAGCCTAAATCTGGGGGTAATGAAGATGAAAATGCTTTAGCAGATGGGGCAAGTTCTAGGAATAGTTTGGCTAATGGGGATACCTTAGCCAAAGAAGATGGCAGTTGCGACGCAGATAATGCCTGCAGGGATGATTCAATCTGTAATAACATTTGGGTAGAGAAAGAAGTCAAAGAACAAAAGAATATGAGTATCCCTGATAAAATGCATGGGTCAAGTAAACCGGTTGCCTCCATTGATCGAGTAGGCAATTCCAATGCATCATTTGCAGTTGGAGGAGAAAATAACCACGGAAGAATCAGCTTGGAAGTGACATCAGGGTCTGTTGCAACTACCTCAAGACCCTACGACTCCATTAGTGAAAATGAGCAGTCAAAGAAAACTAAGACTGACACTGCTGTTCCTTCATCAGAGGGTGGTGATATTGTAAAACCTGCTTCATTTGGTAATGGGGTGATTACAGAAAGCACTAAAGTCAACAGTCGTCATGAAGAATCTGTTGGGCCCTCTAAAATTGAGGAGGAAGAAAGTGAATTATCACCTGTCGGTGATTATGGGGAGGATAACTTCGTTGTCTCCGGAGACGCTGGGGTGCTGGCTTTGCCTAAGGAAAACCATGGTGTTGAAAGGCAATATCAATCTGGAAACGGGGAAGAAATTTGCTCTCAGGATGCTGGGGAAAATGATGCAGACACTGATGATGAAAACAGTGAAAATGTTTCTGAGGCTGGTGAAGATGCCTCTGGCAGTGAGACAGCTGGTGATGAGTGTTCCCGAGAAGAGCATGGAGAGGAGGAGGATGCTGAACATGATGACGTTGATGGTAAGGCTGAGAGTGAAGGAGAGGCTGAAGGGATGGCTGATGGGCACCTTGTTGGAGATGGCTGTTCTTTGCAATTGCCAGAACGTTTTCTTATGTCTGTGAAGCCTCTTGCAAAGCATGTATCGGTACCTTTAGTTGACGAAAAGAAAGACTCTTGTGTTTTTTATGGAAATGATAACTTCTATGTGCTCTATAGGCTTCATCAAATTTTATACAAAAGGATTTTATCTGCAAAATCAAATTCAGTAGGAGCAGAAACTAAGTGGAGAACTTCCAAGGATGGCAACCCTCCAGGTCTTTATGGCAGGTTTATGGGTGCACTGTACAACTTGCTTGATGGATCTGCTGATAATGCAAAATTTGAGGATGAGTGCCGAGCTATTATTGGAAATCAGTCATACATCTTATTCACATTGGACAAGTTAATATATAAATTTGTTAAACAGCTTCAAACGGTTGCAACTGATGAGATGGACAATAAGCTTCTTCAGTTATATGATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

633

Amino Acids

68.66

Weight (kDa)

4.46

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sin3a_C	PF16879	520 - 632	1.2e-24	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	892
Acc36I	ACCTGC	2 cut(s)	1015, 1692
Acc65I	GGTACC	1 cut(s)	1522
AccB1I	GGYRCC	2 cut(s)	1440, 1522
AccIII	TCCGGA	1 cut(s)	1151
AciI	CCGC	2 cut(s)	25, 156
AclI	AACGTT	1 cut(s)	1480
AclWI	GGATC	1 cut(s)	1744
AcsI	RAATTY	6 cut(s)	565, 1230, 1602, 1636, 1754, 1829
AcuI	CTGAAG	2 cut(s)	1443, 1868
AfaI	GTAC	3 cut(s)	508, 1524, 1721
AfiI	CCNNNNNNNGG	3 cut(s)	92, 431, 584
AflIII	ACRYGT	1 cut(s)	165
AgeI	ACCGGT	1 cut(s)	796
AgsI	TTSAA	4 cut(s)	388, 711, 1199, 1847
AjiI	CACGTC	1 cut(s)	128
AjnI	CCWGG	4 cut(s)	85, 183, 541, 1687
AjuI	GAANNNNNNNTTGG	2 cut(s)	1056, 1088
AluBI	AGCT	8 cut(s)	364, 369, 485, 876, 1331, 1775, 1843, 1879
AluI	AGCT	8 cut(s)	364, 369, 485, 876, 1331, 1775, 1843, 1879
Alw21I	GWGCWC	2 cut(s)	1587, 1717
Alw26I	GTCTC	5 cut(s)	394, 545, 1149, 1153, 1319
Alw44I	GTGCAC	1 cut(s)	1713
AlwI	GGATC	1 cut(s)	1744
AlwNI	CAGNNNCTG	2 cut(s)	896, 1268
Ama87I	CYCGRG	1 cut(s)	1347
Aor13HI	TCCGGA	1 cut(s)	1151
AoxI	GGCC	2 cut(s)	446, 1076
ApaI	GGGCCC	1 cut(s)	1080
ApaLI	GTGCAC	1 cut(s)	1713
ApeKI	GCWGC	2 cut(s)	260, 574
ApoI	RAATTY	6 cut(s)	565, 1230, 1602, 1636, 1754, 1829
AsiGI	ACCGGT	1 cut(s)	796
Asp700I	GAANNNNTTC	1 cut(s)	1482
Asp718I	GGTACC	1 cut(s)	1522
AspS9I	GGNCC	3 cut(s)	494, 1076, 1077
AsuHPI	GGTGA	8 cut(s)	107, 560, 1004, 1039, 1104, 1133, 1316, 1346
AvaI	CYCGRG	1 cut(s)	1347
AvaII	GGWCC	1 cut(s)	494
AxyI	CCTNAGG	1 cut(s)	1179
BaeGI	GKGCMC	3 cut(s)	1080, 1443, 1717
BaeI	ACNNNNGTAYC	2 cut(s)	34, 67
BanI	GGYRCC	2 cut(s)	1440, 1522
BanII	GRGCYC	1 cut(s)	1080
Bbv12I	GWGCWC	2 cut(s)	1587, 1717
BbvI	GCAGC	2 cut(s)	247, 586
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	4 cut(s)	87, 185, 543, 1689
BciVI	GTATCC	3 cut(s)	35, 646, 776
BcoDI	GTCTC	5 cut(s)	394, 545, 1149, 1153, 1319
BfaI	CTAG	2 cut(s)	486, 630
BfmI	CTRYAG	3 cut(s)	279, 697, 1588
BfuAI	ACCTGC	2 cut(s)	1015, 1692
BfuI	GTATCC	3 cut(s)	35, 646, 776
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	3 cut(s)	26, 261, 575
BlpI	GCTNAGC	1 cut(s)	365
BlsI	GCNGC	3 cut(s)	27, 262, 576
Bme1390I	CCNGG	4 cut(s)	87, 185, 543, 1689
Bme18I	GGWCC	1 cut(s)	494
BmeT110I	CYCGRG	1 cut(s)	1347
BmgBI	CACGTC	1 cut(s)	128
BmgT120I	GGNCC	3 cut(s)	494, 1076, 1077
BmiI	GGNNCC	5 cut(s)	423, 495, 1078, 1442, 1524
BmrFI	CCNGG	4 cut(s)	87, 185, 543, 1689
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	6 cut(s)	521, 842, 1234, 1249, 1300, 1363
BmuI	ACTGGG	1 cut(s)	25
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
BpmI	CTGGAG	2 cut(s)	314, 1671
Bpu10I	CCTNAGC	1 cut(s)	658
Bpu1102I	GCTNAGC	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	895
BsaAI	YACGTR	1 cut(s)	168
BsaJI	CCNNGG	5 cut(s)	184, 558, 862, 1189, 1671
BsaWI	WCCGGW	2 cut(s)	796, 1151
BsaXI	ACNNNNNCTCC	4 cut(s)	180, 210, 413, 443
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 431, 584
Bse118I	RCCGGY	1 cut(s)	796
Bse1I	ACTGG	1 cut(s)	20
Bse21I	CCTNAGG	1 cut(s)	1179
Bse3DI	GCAATG	2 cut(s)	141, 526
BseAI	TCCGGA	1 cut(s)	1151
BseBI	CCWGG	4 cut(s)	87, 185, 543, 1689
BseDI	CCNNGG	5 cut(s)	184, 558, 862, 1189, 1671
BseGI	GGATG	7 cut(s)	469, 709, 1249, 1378, 1434, 1681, 1768
BseLI	CCNNNNNNNGG	3 cut(s)	92, 431, 584
BseMI	GCAATG	2 cut(s)	141, 526
BseMII	CTCAG	4 cut(s)	192, 1253, 1287, 1395
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	4 cut(s)	864, 1106, 1379, 1382
BseSI	GKGCMC	3 cut(s)	1080, 1443, 1717
BseXI	GCAGC	2 cut(s)	247, 586
BseYI	CCCAGC	2 cut(s)	1160, 1247
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	448, 1078
BshNI	GGYRCC	2 cut(s)	1440, 1522
BshTI	ACCGGT	1 cut(s)	796
BsiEI	CGRYCG	1 cut(s)	49
BsiHKAI	GWGCWC	2 cut(s)	1587, 1717
BsiHKCI	CYCGRG	1 cut(s)	1347
BsiSI	CCGG	3 cut(s)	11, 797, 1152
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	3 cut(s)	92, 431, 584
BsmAI	GTCTC	5 cut(s)	394, 545, 1149, 1153, 1319
BsmBI	CGTCTC	1 cut(s)	1149
BsmFI	GGGAC	1 cut(s)	507
BsmI	GAATGC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	448, 1078
BsoBI	CYCGRG	1 cut(s)	1347
Bsp120I	GGGCCC	1 cut(s)	1076
Bsp1286I	GDGCHC	4 cut(s)	1080, 1443, 1587, 1717
Bsp13I	TCCGGA	1 cut(s)	1151
Bsp1407I	TGTACA	1 cut(s)	1719
Bsp143I	GATC	5 cut(s)	30, 76, 204, 811, 1736
Bsp1720I	GCTNAGC	1 cut(s)	365
Bsp19I	CCATGG	2 cut(s)	558, 1189
BspACI	CCGC	2 cut(s)	25, 156
BspANI	GGCC	2 cut(s)	448, 1078
BspCNI	CTCAG	4 cut(s)	193, 1252, 1288, 1396
BspEI	TCCGGA	1 cut(s)	1151
BspHI	TCATGA	2 cut(s)	322, 1060
BspLI	GGNNCC	5 cut(s)	423, 495, 1078, 1442, 1524
BspMAI	CTGCAG	1 cut(s)	701
BspMI	ACCTGC	2 cut(s)	1015, 1692
BspPI	GGATC	1 cut(s)	1744
BspQI	GCTCTTC	2 cut(s)	354, 1347
BspT107I	GGYRCC	2 cut(s)	1440, 1522
BsrDI	GCAATG	2 cut(s)	141, 526
BsrFI	RCCGGY	1 cut(s)	796
BsrGI	TGTACA	1 cut(s)	1719
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	796
BssECI	CCNNGG	5 cut(s)	184, 558, 862, 1189, 1671
BssMI	GATC	5 cut(s)	30, 76, 204, 811, 1736
BssT1I	CCWWGG	3 cut(s)	558, 1189, 1671
Bst2UI	CCWGG	4 cut(s)	87, 185, 543, 1689
Bst4CI	ACNGT	6 cut(s)	47, 384, 1055, 1283, 1719, 1852
Bst6I	CTCTTC	2 cut(s)	354, 1347
BstAPI	GCANNNNNTGC	2 cut(s)	692, 839
BstAUI	TGTACA	1 cut(s)	1719
BstBAI	YACGTR	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	697, 1170
BstDEI	CTNAG	9 cut(s)	201, 365, 658, 957, 1179, 1239, 1296, 1404, 1656
BstDSI	CCRYGG	3 cut(s)	558, 862, 1189
BstF5I	GGATG	7 cut(s)	469, 709, 1249, 1378, 1434, 1681, 1768
BstKTI	GATC	5 cut(s)	33, 79, 207, 814, 1739
BstMAI	GTCTC	5 cut(s)	394, 545, 1149, 1153, 1319
BstMBI	GATC	5 cut(s)	30, 76, 204, 811, 1736
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	7 cut(s)	260, 620, 692, 839, 1174, 1591, 1748
BstNI	CCWGG	4 cut(s)	87, 185, 543, 1689
BstNSI	RCATGY	1 cut(s)	1517
BstSCI	CCNGG	4 cut(s)	85, 183, 541, 1687
BstSFI	CTRYAG	3 cut(s)	279, 697, 1588
BstSLI	GKGCMC	3 cut(s)	1080, 1443, 1717
BstV1I	GCAGC	2 cut(s)	247, 586
BstX2I	RGATCY	2 cut(s)	76, 1736
BstYI	RGATCY	2 cut(s)	76, 1736
Bsu36I	CCTNAGG	1 cut(s)	1179
BsuI	GTATCC	3 cut(s)	35, 646, 776
BsuRI	GGCC	2 cut(s)	448, 1078
BtgI	CCRYGG	3 cut(s)	558, 862, 1189
BtgZI	GCGATG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	128
BtsCI	GGATG	7 cut(s)	469, 709, 1249, 1378, 1434, 1681, 1768
BtsI	GCAGTG	2 cut(s)	966, 1327
BtsIMutI	CAGTG	5 cut(s)	966, 1266, 1288, 1327, 1715
BveI	ACCTGC	2 cut(s)	1015, 1692
Cac8I	GCNNGC	2 cut(s)	697, 1170
CaiI	CAGNNNCTG	2 cut(s)	896, 1268
CciI	TCATGA	2 cut(s)	322, 1060
Cfr10I	RCCGGY	1 cut(s)	796
Cfr13I	GGNCC	3 cut(s)	494, 1076, 1077
CseI	GACGC	2 cut(s)	692, 1166
Csp6I	GTAC	3 cut(s)	507, 1523, 1720
CspAI	ACCGGT	1 cut(s)	796
CviQI	GTAC	3 cut(s)	507, 1523, 1720
DdeI	CTNAG	9 cut(s)	201, 365, 658, 957, 1179, 1239, 1296, 1404, 1656
DpnI	GATC	5 cut(s)	32, 78, 206, 813, 1738
DpnII	GATC	5 cut(s)	30, 76, 204, 811, 1736
DrdI	GACNNNNNNGTC	1 cut(s)	892
DseDI	GACNNNNNNGTC	1 cut(s)	892
Eam1104I	CTCTTC	2 cut(s)	354, 1347
EarI	CTCTTC	2 cut(s)	354, 1347
Eco130I	CCWWGG	3 cut(s)	558, 1189, 1671
Eco24I	GRGCYC	1 cut(s)	1080
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	494
Eco57I	CTGAAG	2 cut(s)	1443, 1868
Eco81I	CCTNAGG	1 cut(s)	1179
Eco88I	CYCGRG	1 cut(s)	1347
EcoO109I	RGGNCCY	2 cut(s)	494, 1077
EcoRII	CCWGG	4 cut(s)	85, 183, 541, 1687
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	3 cut(s)	558, 1189, 1671
EcoT22I	ATGCAT	2 cut(s)	783, 835
EcoT38I	GRGCYC	1 cut(s)	1080
ErhI	CCWWGG	3 cut(s)	558, 1189, 1671
Esp3I	CGTCTC	1 cut(s)	1149
FaqI	GGGAC	1 cut(s)	507
Fnu4HI	GCNGC	3 cut(s)	26, 261, 575
FokI	GGATG	7 cut(s)	476, 716, 1256, 1385, 1441, 1688, 1775
FriOI	GRGCYC	1 cut(s)	1080
Fsp4HI	GCNGC	3 cut(s)	26, 261, 575
FspBI	CTAG	2 cut(s)	486, 630
GluI	GCNGC	3 cut(s)	26, 261, 575
GsaI	CCCAGC	2 cut(s)	1164, 1251
GsuI	CTGGAG	2 cut(s)	314, 1671
HaeIII	GGCC	2 cut(s)	448, 1078
HapII	CCGG	3 cut(s)	11, 797, 1152
HgaI	GACGC	2 cut(s)	692, 1166
HincII	GTYRAC	2 cut(s)	1051, 1534
HindII	GTYRAC	2 cut(s)	1051, 1534
HindIII	AAGCTT	1 cut(s)	1877
HinfI	GANTC	5 cut(s)	707, 870, 923, 1067, 1547
HpaII	CCGG	3 cut(s)	11, 797, 1152
HphI	GGTGA	8 cut(s)	107, 560, 1004, 1039, 1104, 1133, 1316, 1346
Hpy166II	GTNNAC	5 cut(s)	478, 794, 1051, 1534, 1715
Hpy188I	TCNGA	3 cut(s)	460, 985, 1297
Hpy188III	TCNNGA	9 cut(s)	161, 293, 323, 912, 1061, 1152, 1215, 1241, 1347
Hpy8I	GTNNAC	5 cut(s)	478, 794, 1051, 1534, 1715
Hpy99I	CGWCG	3 cut(s)	129, 376, 686
HpyAV	CCTTC	6 cut(s)	92, 450, 484, 987, 1406, 1418
HpyCH4III	ACNGT	6 cut(s)	47, 384, 1055, 1283, 1719, 1852
HpyCH4IV	ACGT	4 cut(s)	127, 167, 1389, 1480
HpyF10VI	GCNNNNNNNGC	7 cut(s)	260, 620, 692, 839, 1174, 1591, 1748
HpyF3I	CTNAG	9 cut(s)	201, 365, 658, 957, 1179, 1239, 1296, 1404, 1656
HpySE526I	ACGT	4 cut(s)	127, 167, 1389, 1480
Kpn2I	TCCGGA	1 cut(s)	1151
KpnI	GGTACC	1 cut(s)	1526
Kzo9I	GATC	5 cut(s)	30, 76, 204, 811, 1736
LguI	GCTCTTC	2 cut(s)	354, 1347
LmnI	GCTCC	2 cut(s)	421, 1646
Lsp1109I	GCAGC	2 cut(s)	247, 586
LweI	GCATC	6 cut(s)	521, 842, 1234, 1249, 1300, 1363
MaeI	CTAG	2 cut(s)	486, 630
MaeII	ACGT	4 cut(s)	127, 167, 1389, 1480
MaeIII	GTNAC	2 cut(s)	158, 883
MalI	GATC	5 cut(s)	32, 78, 206, 813, 1738
MboI	GATC	5 cut(s)	30, 76, 204, 811, 1736
MfeI	CAATTG	1 cut(s)	1469
MflI	RGATCY	2 cut(s)	76, 1736
MhlI	GDGCHC	4 cut(s)	1080, 1443, 1587, 1717
MlyI	GAGTC	2 cut(s)	917, 1541
MmeI	TCCRAC	2 cut(s)	826, 1429
Mph1103I	ATGCAT	2 cut(s)	783, 835
MroI	TCCGGA	1 cut(s)	1151
MroXI	GAANNNNTTC	1 cut(s)	1482
MseI	TTAA	5 cut(s)	215, 570, 1820, 1836, 1900
MspA1I	CMGCKG	1 cut(s)	1331
MspI	CCGG	3 cut(s)	11, 797, 1152
MspR9I	CCNGG	4 cut(s)	87, 185, 543, 1689
MunI	CAATTG	1 cut(s)	1469
Mva1269I	GAATGC	1 cut(s)	318
MvaI	CCWGG	4 cut(s)	87, 185, 543, 1689
MwoI	GCNNNNNNNGC	7 cut(s)	260, 620, 692, 839, 1174, 1591, 1748
NcoI	CCATGG	2 cut(s)	558, 1189
NdeII	GATC	5 cut(s)	30, 76, 204, 811, 1736
NlaIV	GGNNCC	5 cut(s)	423, 495, 1078, 1442, 1524
NmeAIII	GCCGAG	2 cut(s)	424, 1796
NmuCI	GTSAC	2 cut(s)	158, 883
NsiI	ATGCAT	2 cut(s)	783, 835
NspI	RCATGY	1 cut(s)	1517
PagI	TCATGA	2 cut(s)	322, 1060
PciSI	GCTCTTC	2 cut(s)	354, 1347
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PctI	GAATGC	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	1482
PfeI	GAWTC	3 cut(s)	707, 870, 1067
PflFI	GACNNNGTC	1 cut(s)	17
PinAI	ACCGGT	1 cut(s)	796
PkrI	GCNGC	3 cut(s)	27, 262, 576
PleI	GAGTC	2 cut(s)	917, 1541
PpsI	GAGTC	2 cut(s)	917, 1541
Ppu21I	YACGTR	1 cut(s)	168
PpuMI	RGGWCCY	1 cut(s)	494
Psp1406I	AACGTT	1 cut(s)	1480
Psp5II	RGGWCCY	1 cut(s)	494
Psp6I	CCWGG	4 cut(s)	85, 183, 541, 1687
PspFI	CCCAGC	2 cut(s)	1160, 1247
PspGI	CCWGG	4 cut(s)	85, 183, 541, 1687
PspN4I	GGNNCC	5 cut(s)	423, 495, 1078, 1442, 1524
PspOMI	GGGCCC	1 cut(s)	1076
PspPI	GGNCC	3 cut(s)	494, 1076, 1077
PspPPI	RGGWCCY	1 cut(s)	494
PstI	CTGCAG	1 cut(s)	701
PstNI	CAGNNNCTG	2 cut(s)	896, 1268
PsuI	RGATCY	2 cut(s)	76, 1736
PsyI	GACNNNGTC	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	1331
RsaI	GTAC	3 cut(s)	508, 1524, 1721
RsaNI	GTAC	3 cut(s)	507, 1523, 1720
SapI	GCTCTTC	2 cut(s)	354, 1347
SaqAI	TTAA	5 cut(s)	215, 570, 1820, 1836, 1900
SatI	GCNGC	3 cut(s)	26, 261, 575
Sau3AI	GATC	5 cut(s)	30, 76, 204, 811, 1736
Sau96I	GGNCC	3 cut(s)	494, 1076, 1077
SbfI	CCTGCAGG	1 cut(s)	701
SchI	GAGTC	2 cut(s)	917, 1541
ScrFI	CCNGG	4 cut(s)	87, 185, 543, 1689
SdaI	CCTGCAGG	1 cut(s)	701
SduI	GDGCHC	4 cut(s)	1080, 1443, 1587, 1717
SfaNI	GCATC	6 cut(s)	521, 842, 1234, 1249, 1300, 1363
SfcI	CTRYAG	3 cut(s)	279, 697, 1588
SinI	GGWCC	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	910
SmoI	CTYRAG	1 cut(s)	910
Sse8387I	CCTGCAGG	1 cut(s)	701
SsiI	CCGC	2 cut(s)	25, 156
SspI	AATATT	1 cut(s)	350
SspMI	CTAG	2 cut(s)	486, 630
StyD4I	CCNGG	4 cut(s)	85, 183, 541, 1687
StyI	CCWWGG	3 cut(s)	558, 1189, 1671
TaaI	ACNGT	6 cut(s)	47, 384, 1055, 1283, 1719, 1852
TaiI	ACGT	4 cut(s)	130, 170, 1392, 1483
TaqI	TCGA	5 cut(s)	104, 113, 345, 371, 814
TatI	WGTACW	2 cut(s)	506, 1719
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	3 cut(s)	707, 870, 1067
Tru1I	TTAA	5 cut(s)	215, 570, 1820, 1836, 1900
Tru9I	TTAA	5 cut(s)	215, 570, 1820, 1836, 1900
TscAI	CASTG	5 cut(s)	973, 1273, 1288, 1327, 1722
TseFI	GTSAC	2 cut(s)	158, 883
TseI	GCWGC	2 cut(s)	260, 574
Tsp45I	GTSAC	2 cut(s)	158, 883
TspGWI	ACGGA	1 cut(s)	879
TspRI	CASTG	5 cut(s)	973, 1273, 1288, 1327, 1722
Tth111I	GACNNNGTC	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	1713
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	6 cut(s)	565, 1230, 1602, 1636, 1754, 1829
XceI	RCATGY	1 cut(s)	1517
XmnI	GAANNNNTTC	1 cut(s)	1482
XspI	CTAG	2 cut(s)	486, 630
Zsp2I	ATGCAT	2 cut(s)	783, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.