Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Forward (+)

84027200 .. 84036223

Gene Structure 9024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53749

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4272 bp

ATGAAGAGAATACGAGACGATGTGTACGGTGGTGCTGGTAGTGGTGGTGTTGGTGTTGCTGGTGCTGGTGGTGGTGGTTCTTCTCAATTGAAACGGCCGGTTGTTGCTTCTTCGCGCGGTGACTCAAATGGGCCACCCCAACTCCAAGTACCAGGAGGAGGACGCGCGGTAGGTGAAGTAATAGCTACCGTTGGAGTAGCTACTGTTGGAGTAGGTGCCTCTCAGAAATTGACGACGAATGATGCTCTTACATACCTCAAAGAAGTGAAGGACATGTTTCAAGACCAAAGAGAAAAGTATGATATGTTTCTTGAGGTCATGAAGGATTTCAAGGCTCAAAGAACTGACACGACAGGTGTCATTGCAAGAGTAAAGGAACTGTTTAAAGGGCATACCAAGTTAATTTTGGGGTTTAATACCTTCTTGCCAAAGGGTTATGAGATCACTCTTGAGGAAGTGGAACCAAAAAAGACTGTTGAGTTCGAAGAAGCTATCAGTTTTGTAAACAAGATCAAGAAACGTTTCCAAAATGATGAGCAAGTATACAAGTCATTCTTAGACATACTGAATATGTATCGAAAGGAGCACAAGGACATAAATGAGGTTTACCAGGAGGTTGCTTCTCTATTTGATGACCAACCAGATTTGCTGGATGAGTTCACCAGATTTTTACCAGATACGTCAGCAACAACTTCAACTCATCAGGGGCAATATGGCCGCAATGCATATCCCCGTTTTAATGAGCGGAGCTCTGCTACACCAACTTTGCGGCCAATGCCTATTGACAAGCAACGTAGGCGGGATAAGATTACTTCTCATGGTGATCATGATATTAGTGTTGATCGTCCTGAGCTAGATGATGACAAGGGAATGATGAAAGTACTGAAGGAGCAGAAAAAGCGTTTTCCTGAGAAGGAGAACAGGGATAGGAGAATTCGTGACCATGAAGATAGAGAAGTAGAGACTGATAACAACAGGGACTACAACTTGCAACGTTTTCCAGAGAAAAGGAAATCTTCCAGGAAGGTTGAAGGTTTTGGAGCGAATGCTAACTTTGCTCCTTATGATGACAAAGATACCTTGAAGAGTAAGTACAGCCAGGCATTCGGTTTCTGTGAGAAAGTTAAGGAGCGCTTGTGCAGCCAAGATGACTACCAGGCATTTTTGAAGTGCCTTCACATTTATAGCAATGGCATTATTAAAAGGAATGATTTACAAAATTTGGTGACTGATTTATTGGGGAAGTATCCAGATCTTATGGACGAATTTAATGATTTCTTGGAGCGCTGTGAGAATATTGATGGGTTCCTTGCTGGTGTAATGAAAAAATCTCTGAGTAGTGATGGTCATTTATCGCGATCAGTGAAGGTAGAGGACAAAGACAAGGAGCCAAAGCGTGAAATGGAGGGAGTTAAAGAAAAGGAAAGATACAGGGAGAAGTATTGGGCGAAATCTATTCAAGAGCTTGACCTCTCTAACTGTGAACGCTGTACTCCAAGCTATCGCCTTCTTCCAGAAGATTATCCAATACCCTCAGCAAGCCAGAGATCAGAACTTGCTGCTCAGGTCTTGAATGACCATTGGGTATCTGTGACTTCAGGAAGTGAAGATTATTCTTTTAAACACATGCGCAGAAATCAATATGAAGAAAGTCTTTTCCGTTGTGAAGATGATAGGTTTGAGCTAGATATGTTGTTGGAGTCAGTAAGCTCAACTTCTAAGCGAGCAGAGGAACTGTTGAACAGCATGAATGAAAATAAACTCAGTATGGAAACTCAAATTCATATCGAAGACCACTTTACTGCTCTAAACTTGAGGTGCATTGAACGTTTATATGGTGACCATGGTCTTGATGTGATGGACATACTGCGGAAAAGTCCAACGCTCGCTCTGCCAGTCATATTAACTCGCCTGAAACAGAAACAAGAGGAATGGACAAGGTGTAGAGCGGATTTCAACAAGGTTTGGGCTGATATATATGCCAAAAACCATTACAAATCACTTGATCACCGAAGCTTTTATTTCAAGCAACAAGATTCAAAGAACTTGAGCAGCAAATATTTGGTGGCTGAGATCAAGGAATTGAAAGAGAAAAAACAGATAGAGGACGATATTCTTCTGGCTGTTGCTGCTGGAAACAGGCAATCTATAGTTCCACATCTGGAGTATGAATACCTTGATATCAGCATTCATGAGGACTTGTATAAACTTGTCGAATATTCATGTGACGAGCTTAGCTCAACAAAAGAACAGTTAAATAAGGCTATGAGACTTTATACTACCTTTTTGGAGCCAATGTTGGGCATTCCTTCTCGGCCTCATGGTTCAGAGGATGATGAAGATGTGGGCAAAGCTAGGAAGGGCGCTATGAATTGTACTGCATCAAGCAATGGAGAAAGTGATGGAAGTCCCGGTGGTGAGACTACCATGGTAAATTTTAAGCAGCCTAAATCTGGGGGTAATGAAGATGAAAATGCTTTAGCAGATGTGGCAAGTTCTAGGAATACTTTGGCTAATGGGGATACCTTAGCCAAAGAAGATGGCAGTTGCGATGCAGATAATGCCTGCAGGGATGATTCAATGTGTAATAACATTCGGGTAGAGAAAGAAGTCAAAGAACAGAAGAATATTAGTATCCCTGATAAAATGCATGGGTCAAGTAAACCGGTTGCCTCCATTGATCGAGTAGGCAATTCCAATGCATCATTTGCAGTTGGAGGAGAAAATAACCATGGAAGAATCAGCTTGGAAGTGACATCAGGGTCTGTTGCAACTACCTTAAGACCCTACGACTCCATTAGTGAAAATGAGCAATCAAAGAAAACTAATGCTGATCCTGCTGTTCCTTCATCAGAGGGTGGTGATATTGTAAAACCTGCTTCATTTGGTAATGGGGTGTTTACGGAAAGCACTAAAGTCAACAGTCGTCATGAAGAGTCTGTTGGGCCCTCTAAAATTGAGAAGGAAGAAGGTGAATTATCACCGGTCGGTGATTATGGGGAGGATAACTTCGTTGTCTCTGGAGACGCTGGGGTGCAGGCTTTGCCTAAGGAAAACCATGGTGTTGAAAGACAATATCAATCTGGAAACGGGGAAGAAATTTGCTCTCAGGATGCTGGGGAAAATGATGCAGATGCTGATGATGAAAACAGTGAAAATGTTTCTGAGGCTGGTGAAGATGCCTCTGGCAGTGAGACAGCTGGTGATGAGTGTTCCCGAGAAGAGCATGGAGAGGAGGAGGATGCTGAACATGATGACGTTGATGGTAAGGCTGAGAGTGAAGGTGAGGCGGAAGGGATGGCTGATGGGCACCTTGTTGGAGATGGCTGTTCCTTGCAATTGCCAGAACGTTTTCTTATGTCTGTGAAGCCTCTTGCAAAGCATGTATCGGCACCTTTAGTTGACGAAAAGAAAGACTCTCGTGTTTTTTATGGAAATGATAACTTCTATGTGCTCTATAGGCTTCATCAAATTTTATACGAAAGGATTTTATCTGCAAAATCAAATTCAGTAGGAGCAGAAACTAAGTGGAGAACTTCCAAGGATGGCAACCCTCCAGATCTTTATGGCAGGTTTATGGGTGCACTGTACAATTTGCTTGATGGATCTGCTGATAATGCAAAATTTGAGGATGAGTGCCGAGCTATTATTGGAAATCAGTCGTACATCTTATTCACGTTGGACAAGTTAATATATAAATTTGTTAAACAGCTTCAAACGGTTGCAACTGATGAGATGGACAATAAGCTTCTTCAGTTATATGAATATGAAAAGTCTCGGAAAAAAGGGAAGCTAATTGATTCTGTCTATTTTGAAAACACACGTGTCCTTGTTCACGAGGAGAACATTTACAGATTGGAATTCTTCTCTGCACCCTCCCGGCTGTCCATCCAGCTGATGGACAGCGTGAGTGAAAAGCCTGAGGCGTCGGCAGTTTCTATGGAACCTAATTTTTCATCTTATCTGCACAATGATTTCCTGTCACTTTATCCTGGCAAAAAGGAGCCACATGGAATTACCCTGCAGAGAAACAAGCGCAAATATGCAGGGCAAGATGAATCCTCGGCGTTTTCCAATGCCATGGAGGGTGTTCAATTAGTCAATGGGTTGGAGTGTAAAATTGCTTGCAACTCATCCAAGATCTCTTATGTTCTCGACACAGAAGATTACTTCTTCCGTATGAGAAGGAAAAGGAGAAAGTCAGAGTCCAGATCACCATATTGTGATCAGACGAGGGTACAGCGGTTCCACAAATTCTTGTCCGTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1423

Amino Acids

160.63

Weight (kDa)

5.24

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	98 - 142	3.1e-17	Paired amphipathic helix repeat
PAH	PF02671	180 - 224	4.5e-18	Paired amphipathic helix repeat
PAH	PF02671	384 - 427	6.1e-15	Paired amphipathic helix repeat
Sin3_corepress	PF08295	495 - 587	2.4e-34	Sin3 family co-repressor
Sin3a_C	PF16879	1143 - 1391	8.4e-47	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2761
Acc16I	TGCGCA	1 cut(s)	1631
Acc36I	ACCTGC	2 cut(s)	2884, 3561
AccB1I	GGYRCC	3 cut(s)	215, 3309, 3391
AccB7I	CCANNNNNTGG	1 cut(s)	3898
AccBSI	CCGCTC	2 cut(s)	745, 1949
AccI	GTMKAC	1 cut(s)	543
AccII	CGCG	5 cut(s)	115, 117, 165, 167, 1357
AclI	AACGTT	4 cut(s)	520, 994, 1828, 3349
AclWI	GGATC	2 cut(s)	2828, 3613
AcoI	YGGCCR	3 cut(s)	95, 715, 770
AcuI	CTGAAG	3 cut(s)	905, 1581, 3737
AcvI	CACGTG	1 cut(s)	3824
AcyI	GRCGYC	1 cut(s)	3926
AfaI	GTAC	9 cut(s)	26, 150, 882, 1094, 1492, 2377, 3590, 3665, 4239
AfeI	AGCGCT	2 cut(s)	1133, 1286
AfiI	CCNNNNNNNGG	4 cut(s)	158, 2300, 2453, 3898
AflII	CTTAAG	1 cut(s)	2779
AflIII	ACRYGT	3 cut(s)	273, 3821, 3823
AgeI	ACCGGT	2 cut(s)	2665, 2983
AjnI	CCWGG	6 cut(s)	151, 609, 1019, 1098, 1155, 3991
AjuI	GAANNNNNNNTTGG	2 cut(s)	2925, 2957
Alw21I	GWGCWC	4 cut(s)	588, 752, 3456, 3586
Alw26I	GTCTC	8 cut(s)	9, 956, 2263, 2414, 3018, 3022, 3188, 3780
Alw44I	GTGCAC	1 cut(s)	3582
AlwI	GGATC	2 cut(s)	2828, 3613
AlwNI	CAGNNNCTG	2 cut(s)	2765, 3137
Ama87I	CYCGRG	1 cut(s)	3216
Aor51HI	AGCGCT	2 cut(s)	1133, 1286
AoxI	GGCC	6 cut(s)	95, 131, 715, 770, 2315, 2945
ApaI	GGGCCC	1 cut(s)	2949
ApaLI	GTGCAC	1 cut(s)	3582
ApeKI	GCWGC	5 cut(s)	1140, 1559, 2052, 2129, 2443
AsiGI	ACCGGT	2 cut(s)	2665, 2983
Asp700I	GAANNNNTTC	3 cut(s)	326, 521, 3351
AspLEI	GCGC	7 cut(s)	117, 167, 1134, 1287, 1632, 2366, 4038
AspS9I	GGNCC	3 cut(s)	131, 2945, 2946
AsuC2I	CCSGG	2 cut(s)	2412, 3880
AsuII	TTCGAA	1 cut(s)	483
AvaI	CYCGRG	1 cut(s)	3216
AxyI	CCTNAGG	2 cut(s)	3048, 3921
BaeGI	GKGCMC	3 cut(s)	2949, 3312, 3586
BaeI	ACNNNNGTAYC	2 cut(s)	4229, 4262
BanI	GGYRCC	3 cut(s)	215, 3309, 3391
BanII	GRGCYC	2 cut(s)	752, 2949
BarI	GAAGNNNNNNTAC	2 cut(s)	1076, 1108
BauI	CACGAG	2 cut(s)	3420, 3836
BbrPI	CACGTG	1 cut(s)	3824
BbsI	GAAGAC	1 cut(s)	1797
Bbv12I	GWGCWC	4 cut(s)	588, 752, 3456, 3586
BbvCI	CCTCAGC	1 cut(s)	1534
BbvI	GCAGC	5 cut(s)	1152, 1546, 2064, 2116, 2455
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	6 cut(s)	153, 611, 1021, 1100, 1157, 3993
BciVI	GTATCC	3 cut(s)	1257, 2515, 2645
BclI	TGATCA	3 cut(s)	823, 2005, 4225
BcnI	CCSGG	2 cut(s)	2412, 3880
BcoDI	GTCTC	8 cut(s)	9, 956, 2263, 2414, 3018, 3022, 3188, 3780
BfaI	CTAG	4 cut(s)	854, 1685, 2355, 2499
BfmI	CTRYAG	4 cut(s)	2148, 2566, 3457, 4022
BfoI	RGCGCY	3 cut(s)	1135, 1288, 2367
BfrI	CTTAAG	1 cut(s)	2779
BfuAI	ACCTGC	2 cut(s)	2884, 3561
BfuI	GTATCC	3 cut(s)	1257, 2515, 2645
BglII	AGATCT	3 cut(s)	1252, 3559, 4140
BisI	GCNGC	7 cut(s)	718, 770, 1141, 1560, 2053, 2130, 2444
BlpI	GCTNAGC	1 cut(s)	2234
BlsI	GCNGC	7 cut(s)	719, 771, 1142, 1561, 2054, 2131, 2445
BmcAI	AGTACT	1 cut(s)	882
Bme1390I	CCNGG	8 cut(s)	153, 611, 1021, 1100, 1157, 2412, 3880, 3993
BmeT110I	CYCGRG	1 cut(s)	3216
BmgT120I	GGNCC	3 cut(s)	131, 2945, 2946
BmrFI	CCNGG	8 cut(s)	153, 611, 1021, 1100, 1157, 2412, 3880, 3993
BmsI	GCATC	9 cut(s)	232, 2390, 2542, 2711, 3103, 3118, 3124, 3169, 3232
BoxI	GACNNNNGTC	2 cut(s)	356, 1845
BpiI	GAAGAC	1 cut(s)	1797
BplI	GAGNNNNNCTC	4 cut(s)	734, 766, 2222, 2254
BpmI	CTGGAG	3 cut(s)	2183, 3042, 3540
Bpu10I	CCTNAGC	4 cut(s)	849, 1534, 1563, 2527
Bpu1102I	GCTNAGC	1 cut(s)	2234
Bpu14I	TTCGAA	1 cut(s)	483
BpuEI	CTTGAG	4 cut(s)	332, 470, 1834, 2068
BpuMI	CCSGG	2 cut(s)	2412, 3880
BsaAI	YACGTR	1 cut(s)	3824
BsaHI	GRCGYC	1 cut(s)	3926
BsaJI	CCNNGG	7 cut(s)	1843, 2427, 2731, 3058, 3540, 4062, 4080
BsaWI	WCCGGW	2 cut(s)	2665, 2983
BsaXI	ACNNNNNCTCC	8 cut(s)	126, 156, 922, 952, 1121, 1151, 2282, 2312
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 2300, 2453, 3898
Bse118I	RCCGGY	3 cut(s)	97, 2665, 2983
Bse1I	ACTGG	1 cut(s)	1895
Bse21I	CCTNAGG	2 cut(s)	3048, 3921
Bse3DI	GCAATG	4 cut(s)	360, 727, 1195, 2395
BseBI	CCWGG	6 cut(s)	153, 611, 1021, 1100, 1157, 3993
BseDI	CCNNGG	7 cut(s)	1843, 2427, 2731, 3058, 3540, 4062, 4080
BseLI	CCNNNNNNNGG	4 cut(s)	158, 2300, 2453, 3898
BseMI	GCAATG	4 cut(s)	360, 727, 1195, 2395
BseNI	ACTGG	1 cut(s)	1895
BseRI	GAGGAG	5 cut(s)	171, 2733, 3248, 3251, 3854
BseSI	GKGCMC	3 cut(s)	2949, 3312, 3586
BseX3I	CGGCCG	1 cut(s)	95
BseXI	GCAGC	5 cut(s)	1152, 1546, 2064, 2116, 2455
BseYI	CCCAGC	2 cut(s)	3029, 3116
BsgI	GTGCAG	4 cut(s)	1159, 3056, 3855, 3950
Bsh1236I	CGCG	5 cut(s)	115, 117, 165, 167, 1357
Bsh1285I	CGRYCG	2 cut(s)	98, 2988
BshFI	GGCC	6 cut(s)	97, 133, 717, 772, 2317, 2947
BshNI	GGYRCC	3 cut(s)	215, 3309, 3391
BshTI	ACCGGT	2 cut(s)	2665, 2983
BsiEI	CGRYCG	2 cut(s)	98, 2988
BsiHKAI	GWGCWC	4 cut(s)	588, 752, 3456, 3586
BsiHKCI	CYCGRG	1 cut(s)	3216
BsiSI	CCGG	5 cut(s)	98, 2412, 2666, 2984, 3880
BslFI	GGGAC	2 cut(s)	992, 2394
BslI	CCNNNNNNNGG	4 cut(s)	158, 2300, 2453, 3898
BsmAI	GTCTC	8 cut(s)	9, 956, 2263, 2414, 3018, 3022, 3188, 3780
BsmBI	CGTCTC	2 cut(s)	9, 3018
BsmFI	GGGAC	2 cut(s)	992, 2394
BsmI	GAATGC	4 cut(s)	1051, 1103, 2187, 2304
BsnI	GGCC	6 cut(s)	97, 133, 717, 772, 2317, 2947
BsoBI	CYCGRG	1 cut(s)	3216
Bsp119I	TTCGAA	1 cut(s)	483
Bsp120I	GGGCCC	1 cut(s)	2945
Bsp1286I	GDGCHC	6 cut(s)	588, 752, 2949, 3312, 3456, 3586
Bsp1407I	TGTACA	1 cut(s)	3588
Bsp1720I	GCTNAGC	1 cut(s)	2234
Bsp19I	CCATGG	5 cut(s)	1843, 2427, 2731, 3058, 4080
Bsp68I	TCGCGA	1 cut(s)	1357
BspANI	GGCC	6 cut(s)	97, 133, 717, 772, 2317, 2947
BspFNI	CGCG	5 cut(s)	115, 117, 165, 167, 1357
BspHI	TCATGA	4 cut(s)	318, 826, 2191, 2929
BspMAI	CTGCAG	2 cut(s)	2570, 4026
BspMI	ACCTGC	2 cut(s)	2884, 3561
BspPI	GGATC	2 cut(s)	2828, 3613
BspQI	GCTCTTC	1 cut(s)	3216
BspT104I	TTCGAA	1 cut(s)	483
BspT107I	GGYRCC	3 cut(s)	215, 3309, 3391
BspTI	CTTAAG	1 cut(s)	2779
BsrBI	CCGCTC	2 cut(s)	745, 1949
BsrDI	GCAATG	4 cut(s)	360, 727, 1195, 2395
BsrFI	RCCGGY	3 cut(s)	97, 2665, 2983
BsrGI	TGTACA	1 cut(s)	3588
BsrI	ACTGG	1 cut(s)	1895
BssAI	RCCGGY	3 cut(s)	97, 2665, 2983
BssECI	CCNNGG	7 cut(s)	1843, 2427, 2731, 3058, 3540, 4062, 4080
BssNAI	GTATAC	1 cut(s)	544
BssNI	GRCGYC	1 cut(s)	3926
BssSI	CACGAG	2 cut(s)	3420, 3836
BssT1I	CCWWGG	6 cut(s)	1843, 2427, 2731, 3058, 3540, 4080
Bst1107I	GTATAC	1 cut(s)	544
Bst2BI	CACGAG	2 cut(s)	3420, 3836
Bst2UI	CCWGG	6 cut(s)	153, 611, 1021, 1100, 1157, 3993
Bst6I	CTCTTC	3 cut(s)	1079, 2928, 3216
BstACI	GRCGYC	1 cut(s)	3926
BstAFI	CTTAAG	1 cut(s)	2779
BstAPI	GCANNNNNTGC	3 cut(s)	2561, 2708, 3043
BstAUI	TGTACA	1 cut(s)	3588
BstBAI	YACGTR	1 cut(s)	3824
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	6 cut(s)	1540, 1725, 1887, 2566, 3039, 4126
BstDSI	CCRYGG	5 cut(s)	1843, 2427, 2731, 3058, 4080
BstEII	GGTNACC	1 cut(s)	1838
BstFNI	CGCG	5 cut(s)	115, 117, 165, 167, 1357
BstH2I	RGCGCY	3 cut(s)	1135, 1288, 2367
BstHHI	GCGC	7 cut(s)	117, 167, 1134, 1287, 1632, 2366, 4038
BstMAI	GTCTC	8 cut(s)	9, 956, 2263, 2414, 3018, 3022, 3188, 3780
BstMCI	CGRYCG	2 cut(s)	98, 2988
BstNI	CCWGG	6 cut(s)	153, 611, 1021, 1100, 1157, 3993
BstNSI	RCATGY	3 cut(s)	277, 1630, 3386
BstPAI	GACNNNNGTC	2 cut(s)	356, 1845
BstPI	GGTNACC	1 cut(s)	1838
BstSCI	CCNGG	8 cut(s)	151, 609, 1019, 1098, 1155, 2410, 3878, 3991
BstSFI	CTRYAG	4 cut(s)	2148, 2566, 3457, 4022
BstSLI	GKGCMC	3 cut(s)	2949, 3312, 3586
BstUI	CGCG	5 cut(s)	115, 117, 165, 167, 1357
BstV1I	GCAGC	5 cut(s)	1152, 1546, 2064, 2116, 2455
BstV2I	GAAGAC	1 cut(s)	1797
BstX2I	RGATCY	4 cut(s)	1252, 3559, 3605, 4140
BstXI	CCANNNNNNTGG	1 cut(s)	4081
BstYI	RGATCY	4 cut(s)	1252, 3559, 3605, 4140
BstZ17I	GTATAC	1 cut(s)	544
BstZI	CGGCCG	1 cut(s)	95
Bsu36I	CCTNAGG	2 cut(s)	3048, 3921
BsuI	GTATCC	3 cut(s)	1257, 2515, 2645
BsuRI	GGCC	6 cut(s)	97, 133, 717, 772, 2317, 2947
BtgI	CCRYGG	5 cut(s)	1843, 2427, 2731, 3058, 4080
BtgZI	GCGATG	1 cut(s)	2565
BtsI	GCAGTG	1 cut(s)	3196
BtsIMutI	CAGTG	4 cut(s)	1368, 3157, 3196, 3584
BtuMI	TCGCGA	1 cut(s)	1357
BveI	ACCTGC	2 cut(s)	2884, 3561
Cac8I	GCNNGC	6 cut(s)	1540, 1725, 1887, 2566, 3039, 4126
CaiI	CAGNNNCTG	2 cut(s)	2765, 3137
CciI	TCATGA	4 cut(s)	318, 826, 2191, 2929
CfoI	GCGC	7 cut(s)	117, 167, 1134, 1287, 1632, 2366, 4038
Cfr10I	RCCGGY	3 cut(s)	97, 2665, 2983
Cfr13I	GGNCC	3 cut(s)	131, 2945, 2946
CseI	GACGC	3 cut(s)	171, 3035, 3915
Csp6I	GTAC	9 cut(s)	25, 149, 881, 1093, 1491, 2376, 3589, 3664, 4238
CspAI	ACCGGT	2 cut(s)	2665, 2983
CviQI	GTAC	9 cut(s)	25, 149, 881, 1093, 1491, 2376, 3589, 3664, 4238
DraI	TTTAAA	2 cut(s)	385, 1621
DrdI	GACNNNNNNGTC	1 cut(s)	2761
DseDI	GACNNNNNNGTC	1 cut(s)	2761
EaeI	YGGCCR	3 cut(s)	95, 715, 770
EagI	CGGCCG	1 cut(s)	95
Eam1104I	CTCTTC	3 cut(s)	1079, 2928, 3216
EarI	CTCTTC	3 cut(s)	1079, 2928, 3216
EciI	GGCGGA	1 cut(s)	3305
Ecl136II	GAGCTC	1 cut(s)	750
EclXI	CGGCCG	1 cut(s)	95
Eco130I	CCWWGG	6 cut(s)	1843, 2427, 2731, 3058, 3540, 4080
Eco24I	GRGCYC	2 cut(s)	752, 2949
Eco32I	GATATC	1 cut(s)	2182
Eco47III	AGCGCT	2 cut(s)	1133, 1286
Eco52I	CGGCCG	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	750
Eco57I	CTGAAG	3 cut(s)	905, 1581, 3737
Eco72I	CACGTG	1 cut(s)	3824
Eco81I	CCTNAGG	2 cut(s)	3048, 3921
Eco88I	CYCGRG	1 cut(s)	3216
Eco91I	GGTNACC	1 cut(s)	1838
EcoICRI	GAGCTC	1 cut(s)	750
EcoO109I	RGGNCCY	1 cut(s)	2946
EcoO65I	GGTNACC	1 cut(s)	1838
EcoRI	GAATTC	2 cut(s)	933, 3860
EcoRII	CCWGG	6 cut(s)	151, 609, 1019, 1098, 1155, 3991
EcoRV	GATATC	1 cut(s)	2182
EcoT14I	CCWWGG	6 cut(s)	1843, 2427, 2731, 3058, 3540, 4080
EcoT22I	ATGCAT	3 cut(s)	727, 2652, 2704
EcoT38I	GRGCYC	2 cut(s)	752, 2949
ErhI	CCWWGG	6 cut(s)	1843, 2427, 2731, 3058, 3540, 4080
Esp3I	CGTCTC	2 cut(s)	9, 3018
FaqI	GGGAC	2 cut(s)	992, 2394
FauI	CCCGC	1 cut(s)	792
FbaI	TGATCA	3 cut(s)	823, 2005, 4225
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	7 cut(s)	718, 770, 1141, 1560, 2053, 2130, 2444
FriOI	GRGCYC	2 cut(s)	752, 2949
Fsp4HI	GCNGC	7 cut(s)	718, 770, 1141, 1560, 2053, 2130, 2444
FspBI	CTAG	4 cut(s)	854, 1685, 2355, 2499
FspI	TGCGCA	1 cut(s)	1631
GlaI	GCGC	7 cut(s)	116, 166, 1133, 1286, 1631, 2365, 4037
GluI	GCNGC	7 cut(s)	718, 770, 1141, 1560, 2053, 2130, 2444
GsaI	CCCAGC	2 cut(s)	3033, 3120
GsuI	CTGGAG	3 cut(s)	2183, 3042, 3540
HaeII	RGCGCY	3 cut(s)	1135, 1288, 2367
HaeIII	GGCC	6 cut(s)	97, 133, 717, 772, 2317, 2947
HapII	CCGG	5 cut(s)	98, 2412, 2666, 2984, 3880
HgaI	GACGC	3 cut(s)	171, 3035, 3915
HhaI	GCGC	7 cut(s)	117, 167, 1134, 1287, 1632, 2366, 4038
Hin1I	GRCGYC	1 cut(s)	3926
Hin6I	GCGC	7 cut(s)	115, 165, 1132, 1285, 1630, 2364, 4036
HinP1I	GCGC	7 cut(s)	115, 165, 1132, 1285, 1630, 2364, 4036
HincII	GTYRAC	2 cut(s)	2920, 3403
HindII	GTYRAC	2 cut(s)	2920, 3403
HindIII	AAGCTT	2 cut(s)	2014, 3746
HpaII	CCGG	5 cut(s)	98, 2412, 2666, 2984, 3880
Hpy188I	TCNGA	9 cut(s)	225, 1335, 1552, 2329, 2854, 3166, 3780, 4204, 4230
Hpy99I	CGWCG	2 cut(s)	238, 3931
HpyCH4IV	ACGT	9 cut(s)	520, 680, 793, 994, 1828, 3258, 3349, 3677, 3823
HpySE526I	ACGT	9 cut(s)	520, 680, 793, 994, 1828, 3258, 3349, 3677, 3823
Hsp92I	GRCGYC	1 cut(s)	3926
HspAI	GCGC	7 cut(s)	115, 165, 1132, 1285, 1630, 2364, 4036
Ksp22I	TGATCA	3 cut(s)	823, 2005, 4225
LguI	GCTCTTC	1 cut(s)	3216
Lsp1109I	GCAGC	5 cut(s)	1152, 1546, 2064, 2116, 2455
LweI	GCATC	9 cut(s)	232, 2390, 2542, 2711, 3103, 3118, 3124, 3169, 3232
MaeI	CTAG	4 cut(s)	854, 1685, 2355, 2499
MaeII	ACGT	9 cut(s)	520, 680, 793, 994, 1828, 3258, 3349, 3677, 3823
MaeIII	GTNAC	8 cut(s)	119, 938, 1225, 1591, 1838, 2225, 2752, 3981
MbiI	CCGCTC	2 cut(s)	745, 1949
MfeI	CAATTG	2 cut(s)	86, 3338
MflI	RGATCY	4 cut(s)	1252, 3559, 3605, 4140
MhlI	GDGCHC	6 cut(s)	588, 752, 2949, 3312, 3456, 3586
MlyI	GAGTC	6 cut(s)	116, 1709, 2786, 2945, 3410, 4214
MmeI	TCCRAC	8 cut(s)	172, 187, 1677, 1904, 2695, 3298, 3660, 4089
Mph1103I	ATGCAT	3 cut(s)	727, 2652, 2704
MroXI	GAANNNNTTC	3 cut(s)	326, 521, 3351
MspA1I	CMGCKG	3 cut(s)	3200, 3895, 4243
MspCI	CTTAAG	1 cut(s)	2779
MspI	CCGG	5 cut(s)	98, 2412, 2666, 2984, 3880
MspR9I	CCNGG	8 cut(s)	153, 611, 1021, 1100, 1157, 2412, 3880, 3993
MunI	CAATTG	2 cut(s)	86, 3338
Mva1269I	GAATGC	4 cut(s)	1051, 1103, 2187, 2304
MvaI	CCWGG	6 cut(s)	153, 611, 1021, 1100, 1157, 3993
MvnI	CGCG	5 cut(s)	115, 117, 165, 167, 1357
NciI	CCSGG	2 cut(s)	2412, 3880
NcoI	CCATGG	5 cut(s)	1843, 2427, 2731, 3058, 4080
NmeAIII	GCCGAG	3 cut(s)	2293, 3665, 4043
NmuCI	GTSAC	8 cut(s)	119, 938, 1225, 1591, 1838, 2225, 2752, 3981
NruI	TCGCGA	1 cut(s)	1357
NsbI	TGCGCA	1 cut(s)	1631
NsiI	ATGCAT	3 cut(s)	727, 2652, 2704
NspI	RCATGY	3 cut(s)	277, 1630, 3386
NspV	TTCGAA	1 cut(s)	483
PagI	TCATGA	4 cut(s)	318, 826, 2191, 2929
PciI	ACATGT	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	3216
PctI	GAATGC	4 cut(s)	1051, 1103, 2187, 2304
PdmI	GAANNNNTTC	3 cut(s)	326, 521, 3351
PfeI	GAWTC	5 cut(s)	2036, 2576, 2739, 3800, 4058
PflMI	CCANNNNNTGG	1 cut(s)	3898
PfoI	TCCNGGA	1 cut(s)	1019
PinAI	ACCGGT	2 cut(s)	2665, 2983
PkrI	GCNGC	7 cut(s)	719, 771, 1142, 1561, 2054, 2131, 2445
PleI	GAGTC	6 cut(s)	116, 1708, 2786, 2944, 3410, 4213
PmaCI	CACGTG	1 cut(s)	3824
PmlI	CACGTG	1 cut(s)	3824
PpsI	GAGTC	6 cut(s)	116, 1708, 2786, 2944, 3410, 4213
Ppu21I	YACGTR	1 cut(s)	3824
PscI	ACATGT	1 cut(s)	273
PshAI	GACNNNNGTC	2 cut(s)	356, 1845
Psp124BI	GAGCTC	1 cut(s)	752
Psp1406I	AACGTT	4 cut(s)	520, 994, 1828, 3349
Psp6I	CCWGG	6 cut(s)	151, 609, 1019, 1098, 1155, 3991
PspCI	CACGTG	1 cut(s)	3824
PspEI	GGTNACC	1 cut(s)	1838
PspFI	CCCAGC	2 cut(s)	3029, 3116
PspGI	CCWGG	6 cut(s)	151, 609, 1019, 1098, 1155, 3991
PspOMI	GGGCCC	1 cut(s)	2945
PspPI	GGNCC	3 cut(s)	131, 2945, 2946
PstI	CTGCAG	2 cut(s)	2570, 4026
PstNI	CAGNNNCTG	2 cut(s)	2765, 3137
PsuI	RGATCY	4 cut(s)	1252, 3559, 3605, 4140
PvuII	CAGCTG	2 cut(s)	3200, 3895
RruI	TCGCGA	1 cut(s)	1357
RsaI	GTAC	9 cut(s)	26, 150, 882, 1094, 1492, 2377, 3590, 3665, 4239
RsaNI	GTAC	9 cut(s)	25, 149, 881, 1093, 1491, 2376, 3589, 3664, 4238
SacI	GAGCTC	1 cut(s)	752
SapI	GCTCTTC	1 cut(s)	3216
SatI	GCNGC	7 cut(s)	718, 770, 1141, 1560, 2053, 2130, 2444
Sau96I	GGNCC	3 cut(s)	131, 2945, 2946
SbfI	CCTGCAGG	1 cut(s)	2570
ScaI	AGTACT	1 cut(s)	882
SchI	GAGTC	6 cut(s)	116, 1709, 2786, 2945, 3410, 4214
ScrFI	CCNGG	8 cut(s)	153, 611, 1021, 1100, 1157, 2412, 3880, 3993
SdaI	CCTGCAGG	1 cut(s)	2570
SduI	GDGCHC	6 cut(s)	588, 752, 2949, 3312, 3456, 3586
SfaNI	GCATC	9 cut(s)	232, 2390, 2542, 2711, 3103, 3118, 3124, 3169, 3232
SfcI	CTRYAG	4 cut(s)	2148, 2566, 3457, 4022
SfuI	TTCGAA	1 cut(s)	483
SmlI	CTYRAG	5 cut(s)	311, 449, 1813, 2047, 2779
SmoI	CTYRAG	5 cut(s)	311, 449, 1813, 2047, 2779
Sse8387I	CCTGCAGG	1 cut(s)	2570
SspI	AATATT	4 cut(s)	1297, 2060, 2219, 2629
SspMI	CTAG	4 cut(s)	854, 1685, 2355, 2499
SstI	GAGCTC	1 cut(s)	752
StyD4I	CCNGG	8 cut(s)	151, 609, 1019, 1098, 1155, 2410, 3878, 3991
StyI	CCWWGG	6 cut(s)	1843, 2427, 2731, 3058, 3540, 4080
TaiI	ACGT	9 cut(s)	523, 683, 796, 997, 1831, 3261, 3352, 3680, 3826
TaqI	TCGA	6 cut(s)	483, 577, 1788, 2214, 2683, 4155
TatI	WGTACW	5 cut(s)	880, 1092, 1490, 2375, 3588
TauI	GCSGC	2 cut(s)	720, 772
TfiI	GAWTC	5 cut(s)	2036, 2576, 2739, 3800, 4058
TscAI	CASTG	4 cut(s)	1368, 3157, 3196, 3591
TseFI	GTSAC	8 cut(s)	119, 938, 1225, 1591, 1838, 2225, 2752, 3981
TseI	GCWGC	5 cut(s)	1140, 1559, 2052, 2129, 2443
Tsp45I	GTSAC	8 cut(s)	119, 938, 1225, 1591, 1838, 2225, 2752, 3981
TspGWI	ACGGA	4 cut(s)	1649, 2918, 4166, 4252
TspRI	CASTG	4 cut(s)	1368, 3157, 3196, 3591
Van91I	CCANNNNNTGG	1 cut(s)	3898
Vha464I	CTTAAG	1 cut(s)	2779
VneI	GTGCAC	1 cut(s)	3582
XceI	RCATGY	3 cut(s)	277, 1630, 3386
XcmI	CCANNNNNNNNNTGG	2 cut(s)	403, 3895
XmiI	GTMKAC	1 cut(s)	543
XmnI	GAANNNNTTC	3 cut(s)	326, 521, 3351
XspI	CTAG	4 cut(s)	854, 1685, 2355, 2499
ZrmI	AGTACT	1 cut(s)	882
Zsp2I	ATGCAT	3 cut(s)	727, 2652, 2704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.