Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Reverse (-)

2045652 .. 2056940

Gene Structure 11289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG012100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2331 bp

ATGCTGATCAAAACGCTGCGTTTCGTCGGCGATGGTCGAAATCCGTATCGGAATGCAATCAAACGTATCTTCAATGACCTCAGGGAACTTATGTTGAACGAATCAAAGCGGAACAACCGTACAAGGAAGCTTTCCAAAGTTTGGGCTGATATATATGCCAAAAACCATTACAAATCACTCGATCACCGAAGCTTTTATTTCAAGCAACAAGATTCAAAGAACTTGAGCAGCAAATATTTGGTGGCTGAGATCAAGGAACTAAAAGAGAAAAAACAGATAGAGGACGATATTCTTCTGGCTGTTGCTGCTGGAAACAGGCAATCTATAGTTCCACATCTGGAGTATGAATACCTTGATATCAGCATTCATGAGGACTTGTATAAACTTGTCGAATATTCATGTGAAGAGCTTAGCTCGACGAAAGAACAGTTGAATAAGGCTATGAGACTTTATACTACCTTTTTGGAGCCAATGTTGGGTATTCCTTCTCGGCCTCATGGTTCAGAGGATGATGAAGATGTGGACAAAGCTAGGAAGGGGCCTATGAATTGTACTGTATCAAGCAATGGAGAAAGTGATGGAAGTCCTGGTGGTGAGACTACCATGGTAAATTTTAAGCAGCCTAAATCTGGGGGTAATGAAGATGAAAATGCTTTAGCAGATGGGGCAAGTTCTAGGAATAGTTTGGCTAATGGGGATACCTTAGCCAAAGAAGATGGCAGTTGCGACGCAGATAATGCCTGCAGGGATGATTCAATCTGTAATAACATTTGGGTAGAGAAAGAAGTCATAGAACAAAAGAATATGAGTATCCCTGATAAAATGCATGGGTCAAGTAAACCGGTTGACTCCATTGATCGAGTAGGCAATTCCAATGCATCATTTGCAGTTGGAGGAGAAAATAACCATGGAAGAATCAGCTTGGAAGTGACATCAGGGTCTGTTGCAACTACCTCAAGACCCTACGACTCCATTAGTGAAAATGAGCAGTCAAAGAAAACTAATACTGACACTGCTGTTCCTTCATCAGAGGGTGGTGATATTGTAAAACCTGCTTCATTTGGTAATGGGGTGATTACAGAAAGCACTAAAGATAACTTCGTTGTCTCTGGAGACGCTGGGGTGCTGGCTTTGCCTAAGGAAAACCATGGTGTTGAAAGGCAATATCAATCTGGAAACGGGGAAGAAATTTGCTCTCAGGATGCTGGGGAAAATGATGCAGACGCTGATGATGAAAACAGTGAAAATGTTTCTGAGGCAGGTGAAGATGCCTCTGGCAGTGAGACAGCTGGTGATGAGTGTTCCCGAGAAGAGCATGGAGAGGAGGAGGATGCTGAACATGATGACGTTGATGGTAAGGCTGAGAGTGAAGGAGAGGCTGAAGGGATGGCTGATGGGCACCTTGTTGGAGATGGCTCCTCTTGCAAAGCATTATCGGCACCTTTAGTTGACGAAAAGAAAGACTCTCGTGTTTTTTATGGAAATGATAACTTCTATGTGCTCTATAGGCTTCATCAAATTTTATACGAAAGGATTTTATCTGCAAAATCAAATTCAGTAGGAGCAGAAACTAAGTGGAGAACTTCCAAGGATGGCAACCCTCCAGATCTTTATGGCAGGTTTATGAGTGCACTGTACAACTTGCTTGATGGATCTGCAGATAATGCAAAATTTGAGGATGAGTGCCGAGCTATTATTGGAAATCAGTCGTACATCTTATTCACATTGGACAAGTTAATATATAAATTTGTTAAACAGCTTCAAACGGTTGCAACTGATGAGATGGACAATAAGCTTCTTCAGTTATATGAATATGAAAAGTCTCGGAAAAAAGGGAAGCTAATTGATTCTGTCTATTTTGAAAACACACGTGTCCTTGTTCACGAGAACATTTACAGATTGGAATTCTTCTCTGCACCCTCCCGGCTGTCCATCCAGCTGATGGACAGCGTGAGTGAAAAGCCTGAGGCGTCGGCAGTTTCTATGGAACCTAATTTTTCATCTTATCTGCACAATGATTTCCTGTCACTTTATCCTGGCAAAAAGGAGCCACATGGAATTACCCTGCAGAGAAACAAGCGCAAATATGCAGGGCAAGATGAATCCACTGCGTTTTCCAATGCCATGGAGGATGTTCAATTAGTCAATGGGTTGGAGTGTAAAATAGCTTGCAACTCATCCAAGATCTCTTATGTTCTCGACACAGAAGATTACTTCTTCCGTATGAGAAGGAAAAGGAGAAAGAGTCCAGATCACCATATTGTGATCAGACGAGGGTACAGCGGTTCCACAAATTCTTGTCCGTCTCATAATAGCTTAGAATTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

776

Amino Acids

86.49

Weight (kDa)

5.0

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sin3a_C	PF16879	492 - 739	1.1e-45	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1250
AasI	GACNNNNNNGTC	1 cut(s)	937
Acc36I	ACCTGC	3 cut(s)	1060, 1250, 1608
AccB1I	GGYRCC	2 cut(s)	1398, 1438
AccB7I	CCANNNNNTGG	2 cut(s)	141, 1942
AciI	CCGC	2 cut(s)	109, 2283
AclWI	GGATC	1 cut(s)	1660
AcsI	RAATTY	9 cut(s)	610, 1188, 1518, 1552, 1670, 1745, 1904, 2293, 2321
AcuI	CTGAAG	2 cut(s)	1401, 1784
AcvI	CACGTG	1 cut(s)	1871
AcyI	GRCGYC	1 cut(s)	1970
AfaI	GTAC	5 cut(s)	121, 553, 1637, 1712, 2279
AfiI	CCNNNNNNNGG	4 cut(s)	141, 476, 629, 1942
AflIII	ACRYGT	2 cut(s)	1868, 1870
AgeI	ACCGGT	1 cut(s)	841
AjnI	CCWGG	2 cut(s)	586, 2035
Alw21I	GWGCWC	2 cut(s)	1503, 1633
Alw26I	GTCTC	7 cut(s)	439, 590, 1107, 1111, 1277, 1827, 2310
Alw44I	GTGCAC	1 cut(s)	1629
AlwI	GGATC	1 cut(s)	1660
AlwNI	CAGNNNCTG	2 cut(s)	941, 1226
Ama87I	CYCGRG	1 cut(s)	1305
AoxI	GGCC	2 cut(s)	491, 539
ApaLI	GTGCAC	1 cut(s)	1629
ApeKI	GCWGC	4 cut(s)	16, 228, 305, 619
ApoI	RAATTY	9 cut(s)	610, 1188, 1518, 1552, 1670, 1745, 1904, 2293, 2321
AsiGI	ACCGGT	1 cut(s)	841
AspLEI	GCGC	1 cut(s)	2082
AspS9I	GGNCC	1 cut(s)	539
AsuC2I	CCSGG	1 cut(s)	1924
AsuHPI	GGTGA	7 cut(s)	176, 605, 1049, 1084, 1274, 1304, 2246
AvaI	CYCGRG	1 cut(s)	1305
AxyI	CCTNAGG	3 cut(s)	80, 1137, 1965
BaeGI	GKGCMC	2 cut(s)	1401, 1633
BaeI	ACNNNNGTAYC	2 cut(s)	2269, 2302
BanI	GGYRCC	2 cut(s)	1398, 1438
BauI	CACGAG	2 cut(s)	1467, 1883
BbrPI	CACGTG	1 cut(s)	1871
Bbv12I	GWGCWC	2 cut(s)	1503, 1633
BbvI	GCAGC	4 cut(s)	3, 240, 292, 631
BciT130I	CCWGG	2 cut(s)	588, 2037
BciVI	GTATCC	2 cut(s)	691, 821
BclI	TGATCA	2 cut(s)	6, 2265
BcnI	CCSGG	1 cut(s)	1924
BcoDI	GTCTC	7 cut(s)	439, 590, 1107, 1111, 1277, 1827, 2310
BfaI	CTAG	2 cut(s)	531, 675
BfmI	CTRYAG	5 cut(s)	324, 742, 1504, 1656, 2066
BfuAI	ACCTGC	3 cut(s)	1060, 1250, 1608
BfuI	GTATCC	2 cut(s)	691, 821
BglII	AGATCT	2 cut(s)	1606, 2184
BisI	GCNGC	4 cut(s)	17, 229, 306, 620
BlpI	GCTNAGC	1 cut(s)	410
BlsI	GCNGC	4 cut(s)	18, 230, 307, 621
Bme1390I	CCNGG	3 cut(s)	588, 1924, 2037
BmeT110I	CYCGRG	1 cut(s)	1305
BmgT120I	GGNCC	1 cut(s)	539
BmiI	GGNNCC	8 cut(s)	468, 540, 1400, 1417, 1440, 1989, 2049, 2287
BmrFI	CCNGG	3 cut(s)	588, 1924, 2037
BmsI	GCATC	5 cut(s)	887, 1192, 1207, 1258, 1321
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
BpmI	CTGGAG	3 cut(s)	359, 1131, 1587
Bpu10I	CCTNAGC	1 cut(s)	703
Bpu1102I	GCTNAGC	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	244, 940
BpuMI	CCSGG	1 cut(s)	1924
BsaAI	YACGTR	1 cut(s)	1871
BsaHI	GRCGYC	1 cut(s)	1970
BsaJI	CCNNGG	5 cut(s)	603, 907, 1147, 1587, 2124
BsaWI	WCCGGW	1 cut(s)	841
BsaXI	ACNNNNNCTCC	4 cut(s)	458, 488, 2230, 2260
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 476, 629, 1942
Bse118I	RCCGGY	1 cut(s)	841
Bse21I	CCTNAGG	3 cut(s)	80, 1137, 1965
Bse3DI	GCAATG	1 cut(s)	571
BseBI	CCWGG	2 cut(s)	588, 2037
BseDI	CCNNGG	5 cut(s)	603, 907, 1147, 1587, 2124
BseLI	CCNNNNNNNGG	4 cut(s)	141, 476, 629, 1942
BseMI	GCAATG	1 cut(s)	571
BseMII	CTCAG	6 cut(s)	94, 237, 1211, 1245, 1353, 1956
BseRI	GAGGAG	4 cut(s)	909, 1337, 1340, 1408
BseSI	GKGCMC	2 cut(s)	1401, 1633
BseXI	GCAGC	4 cut(s)	3, 240, 292, 631
BseYI	CCCAGC	2 cut(s)	1118, 1205
BsgI	GTGCAG	2 cut(s)	1899, 1994
BshFI	GGCC	2 cut(s)	493, 541
BshNI	GGYRCC	2 cut(s)	1398, 1438
BshTI	ACCGGT	1 cut(s)	841
BsiHKAI	GWGCWC	2 cut(s)	1503, 1633
BsiHKCI	CYCGRG	1 cut(s)	1305
BsiSI	CCGG	2 cut(s)	842, 1924
BslI	CCNNNNNNNGG	4 cut(s)	141, 476, 629, 1942
BsmAI	GTCTC	7 cut(s)	439, 590, 1107, 1111, 1277, 1827, 2310
BsmBI	CGTCTC	2 cut(s)	1107, 2310
BsmI	GAATGC	2 cut(s)	58, 363
BsnI	GGCC	2 cut(s)	493, 541
BsoBI	CYCGRG	1 cut(s)	1305
Bsp1286I	GDGCHC	3 cut(s)	1401, 1503, 1633
Bsp1407I	TGTACA	1 cut(s)	1635
Bsp143I	GATC	9 cut(s)	6, 181, 249, 856, 1606, 1652, 2184, 2251, 2265
Bsp1720I	GCTNAGC	1 cut(s)	410
Bsp19I	CCATGG	4 cut(s)	603, 907, 1147, 2124
BspACI	CCGC	2 cut(s)	109, 2283
BspANI	GGCC	2 cut(s)	493, 541
BspCNI	CTCAG	6 cut(s)	93, 238, 1210, 1246, 1354, 1957
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	8 cut(s)	468, 540, 1400, 1417, 1440, 1989, 2049, 2287
BspMAI	CTGCAG	3 cut(s)	746, 1660, 2070
BspMI	ACCTGC	3 cut(s)	1060, 1250, 1608
BspPI	GGATC	1 cut(s)	1660
BspQI	GCTCTTC	2 cut(s)	399, 1305
BspT107I	GGYRCC	2 cut(s)	1398, 1438
BsrDI	GCAATG	1 cut(s)	571
BsrFI	RCCGGY	1 cut(s)	841
BsrGI	TGTACA	1 cut(s)	1635
BssAI	RCCGGY	1 cut(s)	841
BssECI	CCNNGG	5 cut(s)	603, 907, 1147, 1587, 2124
BssMI	GATC	9 cut(s)	6, 181, 249, 856, 1606, 1652, 2184, 2251, 2265
BssNI	GRCGYC	1 cut(s)	1970
BssSI	CACGAG	2 cut(s)	1467, 1883
BssT1I	CCWWGG	5 cut(s)	603, 907, 1147, 1587, 2124
Bst2BI	CACGAG	2 cut(s)	1467, 1883
Bst2UI	CCWGG	2 cut(s)	588, 2037
Bst4CI	ACNGT	6 cut(s)	119, 429, 556, 1241, 1635, 1768
Bst6I	CTCTTC	2 cut(s)	399, 1305
BstACI	GRCGYC	1 cut(s)	1970
BstAPI	GCANNNNNTGC	3 cut(s)	737, 884, 1664
BstAUI	TGTACA	1 cut(s)	1635
BstBAI	YACGTR	1 cut(s)	1871
BstC8I	GCNNGC	3 cut(s)	742, 1128, 2170
BstDSI	CCRYGG	4 cut(s)	603, 907, 1147, 2124
BstHHI	GCGC	1 cut(s)	2082
BstKTI	GATC	9 cut(s)	9, 184, 252, 859, 1609, 1655, 2187, 2254, 2268
BstMAI	GTCTC	7 cut(s)	439, 590, 1107, 1111, 1277, 1827, 2310
BstMBI	GATC	9 cut(s)	6, 181, 249, 856, 1606, 1652, 2184, 2251, 2265
BstMWI	GCNNNNNNNGC	9 cut(s)	305, 665, 737, 884, 1132, 1422, 1436, 1507, 1664
BstNI	CCWGG	2 cut(s)	588, 2037
BstSCI	CCNGG	3 cut(s)	586, 1922, 2035
BstSFI	CTRYAG	5 cut(s)	324, 742, 1504, 1656, 2066
BstSLI	GKGCMC	2 cut(s)	1401, 1633
BstV1I	GCAGC	4 cut(s)	3, 240, 292, 631
BstX2I	RGATCY	3 cut(s)	1606, 1652, 2184
BstXI	CCANNNNNNTGG	1 cut(s)	2125
BstYI	RGATCY	3 cut(s)	1606, 1652, 2184
Bsu36I	CCTNAGG	3 cut(s)	80, 1137, 1965
BsuI	GTATCC	2 cut(s)	691, 821
BsuRI	GGCC	2 cut(s)	493, 541
BtgI	CCRYGG	4 cut(s)	603, 907, 1147, 2124
BtgZI	GCGATG	1 cut(s)	45
BtsI	GCAGTG	3 cut(s)	1011, 1285, 2106
BtsIMutI	CAGTG	5 cut(s)	1011, 1246, 1285, 1631, 2106
BveI	ACCTGC	3 cut(s)	1060, 1250, 1608
Cac8I	GCNNGC	3 cut(s)	742, 1128, 2170
CaiI	CAGNNNCTG	2 cut(s)	941, 1226
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	2082
Cfr10I	RCCGGY	1 cut(s)	841
Cfr13I	GGNCC	1 cut(s)	539
CseI	GACGC	4 cut(s)	737, 1124, 1232, 1959
Csp6I	GTAC	5 cut(s)	120, 552, 1636, 1711, 2278
CspAI	ACCGGT	1 cut(s)	841
CviQI	GTAC	5 cut(s)	120, 552, 1636, 1711, 2278
DpnI	GATC	9 cut(s)	8, 183, 251, 858, 1608, 1654, 2186, 2253, 2267
DpnII	GATC	9 cut(s)	6, 181, 249, 856, 1606, 1652, 2184, 2251, 2265
DrdI	GACNNNNNNGTC	1 cut(s)	937
DseDI	GACNNNNNNGTC	1 cut(s)	937
Eam1104I	CTCTTC	2 cut(s)	399, 1305
EarI	CTCTTC	2 cut(s)	399, 1305
Eco130I	CCWWGG	5 cut(s)	603, 907, 1147, 1587, 2124
Eco32I	GATATC	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	1401, 1784
Eco72I	CACGTG	1 cut(s)	1871
Eco81I	CCTNAGG	3 cut(s)	80, 1137, 1965
Eco88I	CYCGRG	1 cut(s)	1305
EcoO109I	RGGNCCY	1 cut(s)	539
EcoRI	GAATTC	2 cut(s)	1904, 2321
EcoRII	CCWGG	2 cut(s)	586, 2035
EcoRV	GATATC	1 cut(s)	358
EcoT14I	CCWWGG	5 cut(s)	603, 907, 1147, 1587, 2124
EcoT22I	ATGCAT	2 cut(s)	828, 880
ErhI	CCWWGG	5 cut(s)	603, 907, 1147, 1587, 2124
Esp3I	CGTCTC	2 cut(s)	1107, 2310
FbaI	TGATCA	2 cut(s)	6, 2265
Fnu4HI	GCNGC	4 cut(s)	17, 229, 306, 620
Fsp4HI	GCNGC	4 cut(s)	17, 229, 306, 620
FspBI	CTAG	2 cut(s)	531, 675
GlaI	GCGC	1 cut(s)	2081
GluI	GCNGC	4 cut(s)	17, 229, 306, 620
GsaI	CCCAGC	2 cut(s)	1122, 1209
GsuI	CTGGAG	3 cut(s)	359, 1131, 1587
HaeIII	GGCC	2 cut(s)	493, 541
HapII	CCGG	2 cut(s)	842, 1924
HgaI	GACGC	4 cut(s)	737, 1124, 1232, 1959
HhaI	GCGC	1 cut(s)	2082
Hin1I	GRCGYC	1 cut(s)	1970
Hin6I	GCGC	1 cut(s)	2080
HinP1I	GCGC	1 cut(s)	2080
HincII	GTYRAC	2 cut(s)	847, 1450
HindII	GTYRAC	2 cut(s)	847, 1450
HindIII	AAGCTT	3 cut(s)	128, 190, 1793
HpaII	CCGG	2 cut(s)	842, 1924
HphI	GGTGA	7 cut(s)	176, 605, 1049, 1084, 1274, 1304, 2246
Hpy166II	GTNNAC	6 cut(s)	523, 839, 847, 1450, 1631, 1882
Hpy188I	TCNGA	6 cut(s)	51, 505, 1030, 1255, 1827, 2270
Hpy8I	GTNNAC	6 cut(s)	523, 839, 847, 1450, 1631, 1882
Hpy99I	CGWCG	4 cut(s)	29, 421, 731, 1975
HpyAV	CCTTC	6 cut(s)	495, 529, 1032, 1364, 1376, 2223
HpyCH4III	ACNGT	6 cut(s)	119, 429, 556, 1241, 1635, 1768
HpyCH4IV	ACGT	3 cut(s)	64, 1347, 1870
HpyF10VI	GCNNNNNNNGC	9 cut(s)	305, 665, 737, 884, 1132, 1422, 1436, 1507, 1664
HpySE526I	ACGT	3 cut(s)	64, 1347, 1870
Hsp92I	GRCGYC	1 cut(s)	1970
HspAI	GCGC	1 cut(s)	2080
Ksp22I	TGATCA	2 cut(s)	6, 2265
Kzo9I	GATC	9 cut(s)	6, 181, 249, 856, 1606, 1652, 2184, 2251, 2265
LguI	GCTCTTC	2 cut(s)	399, 1305
LmnI	GCTCC	4 cut(s)	466, 1421, 1562, 2047
Lsp1109I	GCAGC	4 cut(s)	3, 240, 292, 631
LweI	GCATC	5 cut(s)	887, 1192, 1207, 1258, 1321
MaeI	CTAG	2 cut(s)	531, 675
MaeII	ACGT	3 cut(s)	64, 1347, 1870
MaeIII	GTNAC	2 cut(s)	928, 2025
MalI	GATC	9 cut(s)	8, 183, 251, 858, 1608, 1654, 2186, 2253, 2267
MboI	GATC	9 cut(s)	6, 181, 249, 856, 1606, 1652, 2184, 2251, 2265
MflI	RGATCY	3 cut(s)	1606, 1652, 2184
MhlI	GDGCHC	3 cut(s)	1401, 1503, 1633
MlyI	GAGTC	4 cut(s)	842, 962, 1457, 2254
MmeI	TCCRAC	3 cut(s)	871, 1387, 2133
Mph1103I	ATGCAT	2 cut(s)	828, 880
MseI	TTAA	3 cut(s)	615, 1736, 1752
MspA1I	CMGCKG	3 cut(s)	1289, 1939, 2283
MspI	CCGG	2 cut(s)	842, 1924
MspR9I	CCNGG	3 cut(s)	588, 1924, 2037
Mva1269I	GAATGC	2 cut(s)	58, 363
MvaI	CCWGG	2 cut(s)	588, 2037
MwoI	GCNNNNNNNGC	9 cut(s)	305, 665, 737, 884, 1132, 1422, 1436, 1507, 1664
NciI	CCSGG	1 cut(s)	1924
NcoI	CCATGG	4 cut(s)	603, 907, 1147, 2124
NdeII	GATC	9 cut(s)	6, 181, 249, 856, 1606, 1652, 2184, 2251, 2265
NlaIV	GGNNCC	8 cut(s)	468, 540, 1400, 1417, 1440, 1989, 2049, 2287
NmeAIII	GCCGAG	2 cut(s)	469, 1712
NmuCI	GTSAC	2 cut(s)	928, 2025
NsiI	ATGCAT	2 cut(s)	828, 880
PagI	TCATGA	1 cut(s)	367
PaqCI	CACCTGC	1 cut(s)	1250
PciSI	GCTCTTC	2 cut(s)	399, 1305
PctI	GAATGC	2 cut(s)	58, 363
PfeI	GAWTC	6 cut(s)	101, 212, 752, 915, 1847, 2102
PflMI	CCANNNNNTGG	2 cut(s)	141, 1942
PinAI	ACCGGT	1 cut(s)	841
PkrI	GCNGC	4 cut(s)	18, 230, 307, 621
PleI	GAGTC	4 cut(s)	842, 962, 1457, 2253
PmaCI	CACGTG	1 cut(s)	1871
PmlI	CACGTG	1 cut(s)	1871
PpsI	GAGTC	4 cut(s)	842, 962, 1457, 2253
Ppu21I	YACGTR	1 cut(s)	1871
Psp6I	CCWGG	2 cut(s)	586, 2035
PspCI	CACGTG	1 cut(s)	1871
PspFI	CCCAGC	2 cut(s)	1118, 1205
PspGI	CCWGG	2 cut(s)	586, 2035
PspN4I	GGNNCC	8 cut(s)	468, 540, 1400, 1417, 1440, 1989, 2049, 2287
PspPI	GGNCC	1 cut(s)	539
PstI	CTGCAG	3 cut(s)	746, 1660, 2070
PstNI	CAGNNNCTG	2 cut(s)	941, 1226
PsuI	RGATCY	3 cut(s)	1606, 1652, 2184
PvuII	CAGCTG	2 cut(s)	1289, 1939
RsaI	GTAC	5 cut(s)	121, 553, 1637, 1712, 2279
RsaNI	GTAC	5 cut(s)	120, 552, 1636, 1711, 2278
SapI	GCTCTTC	2 cut(s)	399, 1305
SaqAI	TTAA	3 cut(s)	615, 1736, 1752
SatI	GCNGC	4 cut(s)	17, 229, 306, 620
Sau3AI	GATC	9 cut(s)	6, 181, 249, 856, 1606, 1652, 2184, 2251, 2265
Sau96I	GGNCC	1 cut(s)	539
SbfI	CCTGCAGG	1 cut(s)	746
SchI	GAGTC	4 cut(s)	842, 962, 1457, 2254
ScrFI	CCNGG	3 cut(s)	588, 1924, 2037
SdaI	CCTGCAGG	1 cut(s)	746
SduI	GDGCHC	3 cut(s)	1401, 1503, 1633
SfaNI	GCATC	5 cut(s)	887, 1192, 1207, 1258, 1321
SfcI	CTRYAG	5 cut(s)	324, 742, 1504, 1656, 2066
SmlI	CTYRAG	2 cut(s)	223, 955
SmoI	CTYRAG	2 cut(s)	223, 955
Sse8387I	CCTGCAGG	1 cut(s)	746
SsiI	CCGC	2 cut(s)	109, 2283
SspI	AATATT	2 cut(s)	236, 395
SspMI	CTAG	2 cut(s)	531, 675
StyD4I	CCNGG	3 cut(s)	586, 1922, 2035
StyI	CCWWGG	5 cut(s)	603, 907, 1147, 1587, 2124
TaaI	ACNGT	6 cut(s)	119, 429, 556, 1241, 1635, 1768
TaiI	ACGT	3 cut(s)	67, 1350, 1873
TaqI	TCGA	6 cut(s)	37, 180, 390, 416, 859, 2199
TatI	WGTACW	2 cut(s)	551, 1635
TfiI	GAWTC	6 cut(s)	101, 212, 752, 915, 1847, 2102
Tru1I	TTAA	3 cut(s)	615, 1736, 1752
Tru9I	TTAA	3 cut(s)	615, 1736, 1752
TscAI	CASTG	5 cut(s)	1018, 1246, 1285, 1638, 2113
TseFI	GTSAC	2 cut(s)	928, 2025
TseI	GCWGC	4 cut(s)	16, 228, 305, 619
Tsp45I	GTSAC	2 cut(s)	928, 2025
TspGWI	ACGGA	3 cut(s)	33, 2210, 2292
TspRI	CASTG	5 cut(s)	1018, 1246, 1285, 1638, 2113
Van91I	CCANNNNNTGG	2 cut(s)	141, 1942
VneI	GTGCAC	1 cut(s)	1629
XapI	RAATTY	9 cut(s)	610, 1188, 1518, 1552, 1670, 1745, 1904, 2293, 2321
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1939
XspI	CTAG	2 cut(s)	531, 675
Zsp2I	ATGCAT	2 cut(s)	828, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.