Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Forward (+)

78760638 .. 78768711

Gene Structure 8074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G051060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4266 bp

ATGAAGAGAATACGAGACGATGTGTACGGTGGTGCTGGTAGTGGTGGTGTTGGTGTTGCTGGTGCTGGTGGTTCTTCTCAATTGAAACGGCCGGTTGTTGCTTCTTCGCGCGGTGACTCAAATGGGCCACCCCAACTCCAAGTACCAGGAGGAGGACGCGCGGTAGGTGAAGTAATAGCTACCGTTGGAGTAGCTACTGTTGGAGTAGGTGCCTCTCAGAAATTGACGACGAATGATGCTCTTACATACCTCAAAGAAGTGAAGGACATGTTTCAAGACCAAAGAGAAAAGTATGATATGTTTCTTGAGGTCATGAAGGATTTCAAGGCTCAAAGAACTGACACGACAGGTGTCATTGCAAGAGTAAAGGAACTGTTTAAAGGGCATACCAAGTTAATTTTGGGGTTTAATACCTTCTTGCCAAAGGGTTATGAGATCACTCTTGAGGAAGTGGAACCAAAAAAGACTGTTGAGTTCGAAGAAGCTATCAGTTTTGTAAACAAGATCAAGAAACGTTTCCAAAATGATGAGCAAGTATACAAGTCATTCTTAGACATACTGAATATGTATCGAAAGGAGCACAAGGACATAAATGAGGTTTACCAGGAGGTTGCTTCTCTATTTGATGACCAACCAGATTTGCTGGATGAGTTCACCAGATTTTTACCAGATACGTCAGCAACAACTTCAACTCATCAGGGGCAATATGGCCGCAATGCATATCCCCGTTTTAATGAGCGGAGCTCTGCTACACCAACTTTGCGGCCAATGCCTATTGACAAGCAACGTAGGCGGGATAAGATTACTTCTCATGGTGATCATGATATTAGTGTTGATCGTCCTGAGCTAGATGATGACAAAGGAATGATGAAAGTACTGAAGGAGCAGAAAAAGCGTTTTCCTGAGAAGGAGAACAGGGATAGGAGAATTCGTGACCATGAAGATAGAGAAGTAGAGACTGATAACAACAGGGACTACAACTTGCAACGTTTTCCAGAGAAAAGGAAATCTTCCAGGAAGGTTGAAGGTTTTGGAGCGAATGCTAACTTTGCTCCTTATGATGACAAAGATACCTTGAAGAGTAAGTACAGCCAGGCATTCGGTTTCTGTGAGAAAGTTAAGGAGCGCTTGTGCAGCCAAGATGACTACCAGGCATTTTTGAAGTGCCTTCACATTTATAGCAACGGCATTATTAAAAGGAATGATTTACAAAATTTGGTGACTGATTTATTGGGGAAGTATCCAGATCTTATGGACGAATTTAATGATTTCTTGGAGCGCTGTGAGAATATTGATGGGTTCCTTGCTGGTGTAATGAGAAAATCTCTGAGTAGTGATGGTCATTTATCGCGATCAGTGAAGGTAGAGGACAAAGACAAGGAGCCAAAGCGTGAAATGGAGGGAGTTAAAGAAAAGGAAAGATACAGGGAGAAGTATTGGGCGAAATCTATTCAAGAGCTTGACCTCTCTAACTGTGAACGCTGTACTCCAAGCTATCGCCTTCTTCCAGAAGATTATCCAATACCCTCAGCAAGCCAGAGATCAGAACTTGCTGCTCAGGTCTTGAATGACCATTGGGTATCTGTGACTTCAGGAAGTGAAGATTATTCTTTTAAACACATGCGCAGAAATCAATATGAAGAAAGTCTTTTCCGTTGTGAAGATGATAGGTTTGAGCTAGATATGTTGTTGGAGTCAGTAAGCTCAACTTCTAAGCGAGCAGAGGAACTGTTGAACAGCATGAATGAAAATAAACTCAGTATGGAAACTCAAATTCATATCGAAGACCACTTTACTGCTCTAAACTTGAGGTGCATTGAACGTTTATATGGTGACCATGGTCTTGATGTGATGGACATACTGCGGAAAAGTCCAACACTCGCTCTGCCAGTCATATTAACTCGCCTGAAACAGAAACAAGAGGAATGGACAAGGTGTAGAGCGGATTTCAACAAGGTTTGGGCTGATATATATGCCAAAAACCATTACAAATCACTTGATCACCGAAGCTTTTATTTCAAGCAACAAGATTCAAAGAACTTGAGCAGCAAATATTTGGTGGCTGAGATCAAGGAATTGAAAGAGAAAAAACAGATAGAGGACGATATTCTTCTGGCTGTTGCTGCTGGAAACAGGCAATCTATAGTTCCACATCTGGAGTATGAATACCTTGATATCAGCATTCATGAGGACTTGTATAAACTTGTCGAATATTCATGTGATGAGCTTAGCTCAACAAAAGAACAGTTAAATAAGGCTATGAGACTTTATACTACCTTTTTGGAGCCAATGTTGGGCATTCCTTCTCGGCCTCATGGTTCAGAGGATGATGAAGATGTGGGCAAAGCTAGGAAGGGCGCTATGAATTGTACTGCATCAAGCAATGGAGAAAGTGATGGAAGTCCCGGTGGTGAGACTACCATGGTAAATTTTAAGCAGCCTAAATCTGGGGGTAATGAAGATGAAAATGCTTTAGCAGATGTGGCAAGTTCTAGGAATACTTTGGCTAATGGGGATACCTTAGGCAAAGAAGATGGCAGTTGCGATGCAGATAATGCCTGCAGGGATGATTCAATGTGTAATAACATTCGGGTAGAGAAAGAAGTCAAAGAACAGAAGAATATTAGTATCCCTGATAAAATGCATGGGTCAAGTAAACCGGTTGCCTCCATTGATCGAGTAGGCAATTCCAATGCATCATTTGCAGTTGGAGGAGAAAATAACCATGGAAGAATCAGCTTGGAAGTGACATCAGGGTCTGTTGCAACTACCTCAAGACCCTACGACTCCATTAGTGAAAATGAGCAATCAAAGAAAACTAATGCTGATCCTGCTGTTCCTTCATCAGAGGGTGGTGATATTGTAAAACCTGCTTCATTTGGTAATGGGGTGTTTACGGAAAGCACTAAAGTCAACAGTCGTCATGAAGAGTCTGTTGGGCCCTCTAAAATTGAGAAGGAAGAAGGTGAATTATCACCGGTCGGTGATTATGGGGAGGATAACTTCGTTGTCTCTGGAGACGCTGGGGTGCAGGCTTTGCCTAAGGAAAACCATGGTGTTGAAAGACAATATCAATCTGGAAACGGGGAAGAAATTTGCTCTCAGGATGCTGGGGAAAATGATGCAGATGCTGATGATGAAAACAGTGAAAATGTTTCTGAGGCTGGTGAAGATGCCTCTGGCAGTGAGACAGCTGGTGATGAGTGTTCCCGAGAAGAGCATGGAGAGGAGGAGGATGCTGAACATGATGACGTTGATGGTAAGGCTGAGAGTGAAGGTGAGGCGGAAGGGATGGCTGATGGGCACCTTGTTGGAGATGGCTGTTCTTTGCAATTGCCAGAACGTTTTCTTATGTCTGTGAAGCCTCTTGCAAAGCATGTATCGGCACCTTTAGTTGACGAAAAGAAAGACTCTCGTGTTTTTTATGGAAATGATAACTTCTATGTGCTCTATAGGCTTCATCAAATTTTATATGAAAGGATTTTATCTGCAAAATCAAATTCAGTAGGAGCAGAAACTAAGTGGAGAACTTCCAAGGATGGCAACCCTCCAGATCTTTATGGCAGGTTTATGGGTGCACTGTACAATTTGCTTGATGGATCTGCTGATAATGCAAAATTTGAGGATGAGTGCCGAGCTATTATTGGAAATCAGTCGTACATCTTATTCACGTTGGACAAGTTAATATATAAATTTGTTAAACAGCTTCAAACGGTTGCAACTGATGAGATGGACAATAAGCTTCTTCAGTTATATGAATATGAAAAGTCTCGGAAAAAAGGGAAGCTAATTGATTCTGTCTATTTTGAAAACACACGTGTCCTTGTTCACGAGGAGAACATTTACAGATTGGAATTCTTCTCTGCACCCTCCCGGCTGTCCATCCAGCTGATGGACAGCGTGAGTGAAAAGCCTGAGGCGTCGGCAGTTTCTATGGAACCTAATTTTTCATCTTATCTGCACAATGATTTCCTGTCACTTTATCCTGGCAAAAAGGAGCCACATGGAATTACCCTGCAGAGAAACAAGCGCAAATATGCAGGGCAAGATGAATCCTCGGCGTTTTCCAATGCCATGGAGGGTGTTCAATTAGTCAATGGGTTGGAGTGTAAAATTGCTTGCAACTCATCCAAGATCTCTTATGTTCTCGACACAGAAGATTACTTCTTCCGTATGAGAAGGAAAAGGAGAAAGTCAGAGTCCAGATCACCATATTGTGATCAGACGAGGGTACAGCGGTTCCACAAATTCTTGTCCGTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1421

Amino Acids

160.51

Weight (kDa)

5.24

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	96 - 140	3e-17	Paired amphipathic helix repeat
PAH	PF02671	178 - 222	4.5e-18	Paired amphipathic helix repeat
PAH	PF02671	382 - 425	6.1e-15	Paired amphipathic helix repeat
Sin3_corepress	PF08295	493 - 585	2.4e-34	Sin3 family co-repressor
Sin3a_C	PF16879	1141 - 1389	8.4e-47	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2755
Acc16I	TGCGCA	1 cut(s)	1625
Acc36I	ACCTGC	2 cut(s)	2878, 3555
AccB1I	GGYRCC	3 cut(s)	209, 3303, 3385
AccB7I	CCANNNNNTGG	1 cut(s)	3892
AccBSI	CCGCTC	2 cut(s)	739, 1943
AccI	GTMKAC	1 cut(s)	537
AccII	CGCG	5 cut(s)	109, 111, 159, 161, 1351
AclI	AACGTT	4 cut(s)	514, 988, 1822, 3343
AclWI	GGATC	2 cut(s)	2822, 3607
AcoI	YGGCCR	3 cut(s)	89, 709, 764
AcuI	CTGAAG	3 cut(s)	899, 1575, 3731
AcvI	CACGTG	1 cut(s)	3818
AcyI	GRCGYC	1 cut(s)	3920
AfaI	GTAC	9 cut(s)	26, 144, 876, 1088, 1486, 2371, 3584, 3659, 4233
AfeI	AGCGCT	2 cut(s)	1127, 1280
AfiI	CCNNNNNNNGG	4 cut(s)	152, 2294, 2447, 3892
AflIII	ACRYGT	3 cut(s)	267, 3815, 3817
AgeI	ACCGGT	2 cut(s)	2659, 2977
AjnI	CCWGG	6 cut(s)	145, 603, 1013, 1092, 1149, 3985
AjuI	GAANNNNNNNTTGG	2 cut(s)	2919, 2951
Alw21I	GWGCWC	4 cut(s)	582, 746, 3450, 3580
Alw26I	GTCTC	8 cut(s)	9, 950, 2257, 2408, 3012, 3016, 3182, 3774
Alw44I	GTGCAC	1 cut(s)	3576
AlwI	GGATC	2 cut(s)	2822, 3607
AlwNI	CAGNNNCTG	2 cut(s)	2759, 3131
Ama87I	CYCGRG	1 cut(s)	3210
Aor51HI	AGCGCT	2 cut(s)	1127, 1280
AoxI	GGCC	6 cut(s)	89, 125, 709, 764, 2309, 2939
ApaI	GGGCCC	1 cut(s)	2943
ApaLI	GTGCAC	1 cut(s)	3576
ApeKI	GCWGC	5 cut(s)	1134, 1553, 2046, 2123, 2437
AsiGI	ACCGGT	2 cut(s)	2659, 2977
Asp700I	GAANNNNTTC	3 cut(s)	320, 515, 3345
AspLEI	GCGC	7 cut(s)	111, 161, 1128, 1281, 1626, 2360, 4032
AspS9I	GGNCC	3 cut(s)	125, 2939, 2940
AsuC2I	CCSGG	2 cut(s)	2406, 3874
AsuII	TTCGAA	1 cut(s)	477
AvaI	CYCGRG	1 cut(s)	3210
AxyI	CCTNAGG	3 cut(s)	2521, 3042, 3915
BaeGI	GKGCMC	3 cut(s)	2943, 3306, 3580
BaeI	ACNNNNGTAYC	2 cut(s)	4223, 4256
BanI	GGYRCC	3 cut(s)	209, 3303, 3385
BanII	GRGCYC	2 cut(s)	746, 2943
BarI	GAAGNNNNNNTAC	2 cut(s)	1070, 1102
BauI	CACGAG	2 cut(s)	3414, 3830
BbrPI	CACGTG	1 cut(s)	3818
BbsI	GAAGAC	1 cut(s)	1791
Bbv12I	GWGCWC	4 cut(s)	582, 746, 3450, 3580
BbvCI	CCTCAGC	1 cut(s)	1528
BbvI	GCAGC	5 cut(s)	1146, 1540, 2058, 2110, 2449
BceAI	ACGGC	2 cut(s)	104, 1201
BciT130I	CCWGG	6 cut(s)	147, 605, 1015, 1094, 1151, 3987
BciVI	GTATCC	3 cut(s)	1251, 2509, 2639
BclI	TGATCA	3 cut(s)	817, 1999, 4219
BcnI	CCSGG	2 cut(s)	2406, 3874
BcoDI	GTCTC	8 cut(s)	9, 950, 2257, 2408, 3012, 3016, 3182, 3774
BfaI	CTAG	4 cut(s)	848, 1679, 2349, 2493
BfmI	CTRYAG	4 cut(s)	2142, 2560, 3451, 4016
BfoI	RGCGCY	3 cut(s)	1129, 1282, 2361
BfuAI	ACCTGC	2 cut(s)	2878, 3555
BfuI	GTATCC	3 cut(s)	1251, 2509, 2639
BglII	AGATCT	3 cut(s)	1246, 3553, 4134
BisI	GCNGC	7 cut(s)	712, 764, 1135, 1554, 2047, 2124, 2438
BlpI	GCTNAGC	1 cut(s)	2228
BlsI	GCNGC	7 cut(s)	713, 765, 1136, 1555, 2048, 2125, 2439
BmcAI	AGTACT	1 cut(s)	876
Bme1390I	CCNGG	8 cut(s)	147, 605, 1015, 1094, 1151, 2406, 3874, 3987
BmeT110I	CYCGRG	1 cut(s)	3210
BmgT120I	GGNCC	3 cut(s)	125, 2939, 2940
BmrFI	CCNGG	8 cut(s)	147, 605, 1015, 1094, 1151, 2406, 3874, 3987
BmsI	GCATC	9 cut(s)	226, 2384, 2536, 2705, 3097, 3112, 3118, 3163, 3226
BoxI	GACNNNNGTC	2 cut(s)	350, 1839
BpiI	GAAGAC	1 cut(s)	1791
BplI	GAGNNNNNCTC	6 cut(s)	728, 760, 1309, 1341, 2216, 2248
BpmI	CTGGAG	3 cut(s)	2177, 3036, 3534
Bpu10I	CCTNAGC	3 cut(s)	843, 1528, 1557
Bpu1102I	GCTNAGC	1 cut(s)	2228
Bpu14I	TTCGAA	1 cut(s)	477
BpuEI	CTTGAG	5 cut(s)	326, 464, 1828, 2062, 2758
BpuMI	CCSGG	2 cut(s)	2406, 3874
BsaAI	YACGTR	1 cut(s)	3818
BsaHI	GRCGYC	1 cut(s)	3920
BsaJI	CCNNGG	7 cut(s)	1837, 2421, 2725, 3052, 3534, 4056, 4074
BsaWI	WCCGGW	2 cut(s)	2659, 2977
BsaXI	ACNNNNNCTCC	8 cut(s)	120, 150, 916, 946, 1115, 1145, 2276, 2306
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 2294, 2447, 3892
Bse118I	RCCGGY	3 cut(s)	91, 2659, 2977
Bse1I	ACTGG	1 cut(s)	1889
Bse21I	CCTNAGG	3 cut(s)	2521, 3042, 3915
Bse3DI	GCAATG	3 cut(s)	354, 721, 2389
BseBI	CCWGG	6 cut(s)	147, 605, 1015, 1094, 1151, 3987
BseDI	CCNNGG	7 cut(s)	1837, 2421, 2725, 3052, 3534, 4056, 4074
BseLI	CCNNNNNNNGG	4 cut(s)	152, 2294, 2447, 3892
BseMI	GCAATG	3 cut(s)	354, 721, 2389
BseNI	ACTGG	1 cut(s)	1889
BseRI	GAGGAG	5 cut(s)	165, 2727, 3242, 3245, 3848
BseSI	GKGCMC	3 cut(s)	2943, 3306, 3580
BseX3I	CGGCCG	1 cut(s)	89
BseXI	GCAGC	5 cut(s)	1146, 1540, 2058, 2110, 2449
BseYI	CCCAGC	2 cut(s)	3023, 3110
BsgI	GTGCAG	4 cut(s)	1153, 3050, 3849, 3944
Bsh1236I	CGCG	5 cut(s)	109, 111, 159, 161, 1351
Bsh1285I	CGRYCG	2 cut(s)	92, 2982
BshFI	GGCC	6 cut(s)	91, 127, 711, 766, 2311, 2941
BshNI	GGYRCC	3 cut(s)	209, 3303, 3385
BshTI	ACCGGT	2 cut(s)	2659, 2977
BsiEI	CGRYCG	2 cut(s)	92, 2982
BsiHKAI	GWGCWC	4 cut(s)	582, 746, 3450, 3580
BsiHKCI	CYCGRG	1 cut(s)	3210
BsiSI	CCGG	5 cut(s)	92, 2406, 2660, 2978, 3874
BslFI	GGGAC	2 cut(s)	986, 2388
BslI	CCNNNNNNNGG	4 cut(s)	152, 2294, 2447, 3892
BsmAI	GTCTC	8 cut(s)	9, 950, 2257, 2408, 3012, 3016, 3182, 3774
BsmBI	CGTCTC	2 cut(s)	9, 3012
BsmFI	GGGAC	2 cut(s)	986, 2388
BsmI	GAATGC	4 cut(s)	1045, 1097, 2181, 2298
BsnI	GGCC	6 cut(s)	91, 127, 711, 766, 2311, 2941
BsoBI	CYCGRG	1 cut(s)	3210
Bsp119I	TTCGAA	1 cut(s)	477
Bsp120I	GGGCCC	1 cut(s)	2939
Bsp1286I	GDGCHC	6 cut(s)	582, 746, 2943, 3306, 3450, 3580
Bsp1407I	TGTACA	1 cut(s)	3582
Bsp1720I	GCTNAGC	1 cut(s)	2228
Bsp19I	CCATGG	5 cut(s)	1837, 2421, 2725, 3052, 4074
Bsp68I	TCGCGA	1 cut(s)	1351
BspANI	GGCC	6 cut(s)	91, 127, 711, 766, 2311, 2941
BspFNI	CGCG	5 cut(s)	109, 111, 159, 161, 1351
BspHI	TCATGA	4 cut(s)	312, 820, 2185, 2923
BspMAI	CTGCAG	2 cut(s)	2564, 4020
BspMI	ACCTGC	2 cut(s)	2878, 3555
BspPI	GGATC	2 cut(s)	2822, 3607
BspQI	GCTCTTC	1 cut(s)	3210
BspT104I	TTCGAA	1 cut(s)	477
BspT107I	GGYRCC	3 cut(s)	209, 3303, 3385
BsrBI	CCGCTC	2 cut(s)	739, 1943
BsrDI	GCAATG	3 cut(s)	354, 721, 2389
BsrFI	RCCGGY	3 cut(s)	91, 2659, 2977
BsrGI	TGTACA	1 cut(s)	3582
BsrI	ACTGG	1 cut(s)	1889
BssAI	RCCGGY	3 cut(s)	91, 2659, 2977
BssECI	CCNNGG	7 cut(s)	1837, 2421, 2725, 3052, 3534, 4056, 4074
BssNAI	GTATAC	1 cut(s)	538
BssNI	GRCGYC	1 cut(s)	3920
BssSI	CACGAG	2 cut(s)	3414, 3830
BssT1I	CCWWGG	6 cut(s)	1837, 2421, 2725, 3052, 3534, 4074
Bst1107I	GTATAC	1 cut(s)	538
Bst2BI	CACGAG	2 cut(s)	3414, 3830
Bst2UI	CCWGG	6 cut(s)	147, 605, 1015, 1094, 1151, 3987
Bst6I	CTCTTC	3 cut(s)	1073, 2922, 3210
BstACI	GRCGYC	1 cut(s)	3920
BstAPI	GCANNNNNTGC	3 cut(s)	2555, 2702, 3037
BstAUI	TGTACA	1 cut(s)	3582
BstBAI	YACGTR	1 cut(s)	3818
BstBI	TTCGAA	1 cut(s)	477
BstC8I	GCNNGC	5 cut(s)	1534, 1719, 2560, 3033, 4120
BstDSI	CCRYGG	5 cut(s)	1837, 2421, 2725, 3052, 4074
BstEII	GGTNACC	1 cut(s)	1832
BstFNI	CGCG	5 cut(s)	109, 111, 159, 161, 1351
BstH2I	RGCGCY	3 cut(s)	1129, 1282, 2361
BstHHI	GCGC	7 cut(s)	111, 161, 1128, 1281, 1626, 2360, 4032
BstMAI	GTCTC	8 cut(s)	9, 950, 2257, 2408, 3012, 3016, 3182, 3774
BstMCI	CGRYCG	2 cut(s)	92, 2982
BstNI	CCWGG	6 cut(s)	147, 605, 1015, 1094, 1151, 3987
BstNSI	RCATGY	3 cut(s)	271, 1624, 3380
BstPAI	GACNNNNGTC	2 cut(s)	350, 1839
BstPI	GGTNACC	1 cut(s)	1832
BstSCI	CCNGG	8 cut(s)	145, 603, 1013, 1092, 1149, 2404, 3872, 3985
BstSFI	CTRYAG	4 cut(s)	2142, 2560, 3451, 4016
BstSLI	GKGCMC	3 cut(s)	2943, 3306, 3580
BstUI	CGCG	5 cut(s)	109, 111, 159, 161, 1351
BstV1I	GCAGC	5 cut(s)	1146, 1540, 2058, 2110, 2449
BstV2I	GAAGAC	1 cut(s)	1791
BstX2I	RGATCY	4 cut(s)	1246, 3553, 3599, 4134
BstXI	CCANNNNNNTGG	1 cut(s)	4075
BstYI	RGATCY	4 cut(s)	1246, 3553, 3599, 4134
BstZ17I	GTATAC	1 cut(s)	538
BstZI	CGGCCG	1 cut(s)	89
Bsu36I	CCTNAGG	3 cut(s)	2521, 3042, 3915
BsuI	GTATCC	3 cut(s)	1251, 2509, 2639
BsuRI	GGCC	6 cut(s)	91, 127, 711, 766, 2311, 2941
BtgI	CCRYGG	5 cut(s)	1837, 2421, 2725, 3052, 4074
BtgZI	GCGATG	1 cut(s)	2559
BtsI	GCAGTG	1 cut(s)	3190
BtsIMutI	CAGTG	4 cut(s)	1362, 3151, 3190, 3578
BtuMI	TCGCGA	1 cut(s)	1351
BveI	ACCTGC	2 cut(s)	2878, 3555
Cac8I	GCNNGC	5 cut(s)	1534, 1719, 2560, 3033, 4120
CaiI	CAGNNNCTG	2 cut(s)	2759, 3131
CciI	TCATGA	4 cut(s)	312, 820, 2185, 2923
CfoI	GCGC	7 cut(s)	111, 161, 1128, 1281, 1626, 2360, 4032
Cfr10I	RCCGGY	3 cut(s)	91, 2659, 2977
Cfr13I	GGNCC	3 cut(s)	125, 2939, 2940
CseI	GACGC	3 cut(s)	165, 3029, 3909
Csp6I	GTAC	9 cut(s)	25, 143, 875, 1087, 1485, 2370, 3583, 3658, 4232
CspAI	ACCGGT	2 cut(s)	2659, 2977
CviQI	GTAC	9 cut(s)	25, 143, 875, 1087, 1485, 2370, 3583, 3658, 4232
DraI	TTTAAA	2 cut(s)	379, 1615
DrdI	GACNNNNNNGTC	1 cut(s)	2755
DseDI	GACNNNNNNGTC	1 cut(s)	2755
EaeI	YGGCCR	3 cut(s)	89, 709, 764
EagI	CGGCCG	1 cut(s)	89
Eam1104I	CTCTTC	3 cut(s)	1073, 2922, 3210
EarI	CTCTTC	3 cut(s)	1073, 2922, 3210
EciI	GGCGGA	1 cut(s)	3299
Ecl136II	GAGCTC	1 cut(s)	744
EclXI	CGGCCG	1 cut(s)	89
Eco130I	CCWWGG	6 cut(s)	1837, 2421, 2725, 3052, 3534, 4074
Eco24I	GRGCYC	2 cut(s)	746, 2943
Eco32I	GATATC	1 cut(s)	2176
Eco47III	AGCGCT	2 cut(s)	1127, 1280
Eco52I	CGGCCG	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	744
Eco57I	CTGAAG	3 cut(s)	899, 1575, 3731
Eco72I	CACGTG	1 cut(s)	3818
Eco81I	CCTNAGG	3 cut(s)	2521, 3042, 3915
Eco88I	CYCGRG	1 cut(s)	3210
Eco91I	GGTNACC	1 cut(s)	1832
EcoICRI	GAGCTC	1 cut(s)	744
EcoO109I	RGGNCCY	1 cut(s)	2940
EcoO65I	GGTNACC	1 cut(s)	1832
EcoRI	GAATTC	2 cut(s)	927, 3854
EcoRII	CCWGG	6 cut(s)	145, 603, 1013, 1092, 1149, 3985
EcoRV	GATATC	1 cut(s)	2176
EcoT14I	CCWWGG	6 cut(s)	1837, 2421, 2725, 3052, 3534, 4074
EcoT22I	ATGCAT	3 cut(s)	721, 2646, 2698
EcoT38I	GRGCYC	2 cut(s)	746, 2943
ErhI	CCWWGG	6 cut(s)	1837, 2421, 2725, 3052, 3534, 4074
Esp3I	CGTCTC	2 cut(s)	9, 3012
FaqI	GGGAC	2 cut(s)	986, 2388
FauI	CCCGC	1 cut(s)	786
FbaI	TGATCA	3 cut(s)	817, 1999, 4219
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	7 cut(s)	712, 764, 1135, 1554, 2047, 2124, 2438
FriOI	GRGCYC	2 cut(s)	746, 2943
Fsp4HI	GCNGC	7 cut(s)	712, 764, 1135, 1554, 2047, 2124, 2438
FspBI	CTAG	4 cut(s)	848, 1679, 2349, 2493
FspI	TGCGCA	1 cut(s)	1625
GlaI	GCGC	7 cut(s)	110, 160, 1127, 1280, 1625, 2359, 4031
GluI	GCNGC	7 cut(s)	712, 764, 1135, 1554, 2047, 2124, 2438
GsaI	CCCAGC	2 cut(s)	3027, 3114
GsuI	CTGGAG	3 cut(s)	2177, 3036, 3534
HaeII	RGCGCY	3 cut(s)	1129, 1282, 2361
HaeIII	GGCC	6 cut(s)	91, 127, 711, 766, 2311, 2941
HapII	CCGG	5 cut(s)	92, 2406, 2660, 2978, 3874
HgaI	GACGC	3 cut(s)	165, 3029, 3909
HhaI	GCGC	7 cut(s)	111, 161, 1128, 1281, 1626, 2360, 4032
Hin1I	GRCGYC	1 cut(s)	3920
Hin6I	GCGC	7 cut(s)	109, 159, 1126, 1279, 1624, 2358, 4030
HinP1I	GCGC	7 cut(s)	109, 159, 1126, 1279, 1624, 2358, 4030
HincII	GTYRAC	2 cut(s)	2914, 3397
HindII	GTYRAC	2 cut(s)	2914, 3397
HindIII	AAGCTT	2 cut(s)	2008, 3740
HpaII	CCGG	5 cut(s)	92, 2406, 2660, 2978, 3874
Hpy188I	TCNGA	9 cut(s)	219, 1329, 1546, 2323, 2848, 3160, 3774, 4198, 4224
Hpy99I	CGWCG	2 cut(s)	232, 3925
HpyCH4IV	ACGT	9 cut(s)	514, 674, 787, 988, 1822, 3252, 3343, 3671, 3817
HpySE526I	ACGT	9 cut(s)	514, 674, 787, 988, 1822, 3252, 3343, 3671, 3817
Hsp92I	GRCGYC	1 cut(s)	3920
HspAI	GCGC	7 cut(s)	109, 159, 1126, 1279, 1624, 2358, 4030
Ksp22I	TGATCA	3 cut(s)	817, 1999, 4219
LguI	GCTCTTC	1 cut(s)	3210
Lsp1109I	GCAGC	5 cut(s)	1146, 1540, 2058, 2110, 2449
LweI	GCATC	9 cut(s)	226, 2384, 2536, 2705, 3097, 3112, 3118, 3163, 3226
MaeI	CTAG	4 cut(s)	848, 1679, 2349, 2493
MaeII	ACGT	9 cut(s)	514, 674, 787, 988, 1822, 3252, 3343, 3671, 3817
MaeIII	GTNAC	7 cut(s)	113, 932, 1219, 1585, 1832, 2746, 3975
MbiI	CCGCTC	2 cut(s)	739, 1943
MfeI	CAATTG	2 cut(s)	80, 3332
MflI	RGATCY	4 cut(s)	1246, 3553, 3599, 4134
MhlI	GDGCHC	6 cut(s)	582, 746, 2943, 3306, 3450, 3580
MlyI	GAGTC	6 cut(s)	110, 1703, 2780, 2939, 3404, 4208
MmeI	TCCRAC	8 cut(s)	166, 181, 1671, 1898, 2689, 3292, 3654, 4083
Mph1103I	ATGCAT	3 cut(s)	721, 2646, 2698
MroXI	GAANNNNTTC	3 cut(s)	320, 515, 3345
MspA1I	CMGCKG	3 cut(s)	3194, 3889, 4237
MspI	CCGG	5 cut(s)	92, 2406, 2660, 2978, 3874
MspR9I	CCNGG	8 cut(s)	147, 605, 1015, 1094, 1151, 2406, 3874, 3987
MunI	CAATTG	2 cut(s)	80, 3332
Mva1269I	GAATGC	4 cut(s)	1045, 1097, 2181, 2298
MvaI	CCWGG	6 cut(s)	147, 605, 1015, 1094, 1151, 3987
MvnI	CGCG	5 cut(s)	109, 111, 159, 161, 1351
NciI	CCSGG	2 cut(s)	2406, 3874
NcoI	CCATGG	5 cut(s)	1837, 2421, 2725, 3052, 4074
NmeAIII	GCCGAG	3 cut(s)	2287, 3659, 4037
NmuCI	GTSAC	7 cut(s)	113, 932, 1219, 1585, 1832, 2746, 3975
NruI	TCGCGA	1 cut(s)	1351
NsbI	TGCGCA	1 cut(s)	1625
NsiI	ATGCAT	3 cut(s)	721, 2646, 2698
NspI	RCATGY	3 cut(s)	271, 1624, 3380
NspV	TTCGAA	1 cut(s)	477
PagI	TCATGA	4 cut(s)	312, 820, 2185, 2923
PciI	ACATGT	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	3210
PctI	GAATGC	4 cut(s)	1045, 1097, 2181, 2298
PdmI	GAANNNNTTC	3 cut(s)	320, 515, 3345
PfeI	GAWTC	5 cut(s)	2030, 2570, 2733, 3794, 4052
PflMI	CCANNNNNTGG	1 cut(s)	3892
PfoI	TCCNGGA	1 cut(s)	1013
PinAI	ACCGGT	2 cut(s)	2659, 2977
PkrI	GCNGC	7 cut(s)	713, 765, 1136, 1555, 2048, 2125, 2439
PleI	GAGTC	6 cut(s)	110, 1702, 2780, 2938, 3404, 4207
PmaCI	CACGTG	1 cut(s)	3818
PmlI	CACGTG	1 cut(s)	3818
PpsI	GAGTC	6 cut(s)	110, 1702, 2780, 2938, 3404, 4207
Ppu21I	YACGTR	1 cut(s)	3818
PscI	ACATGT	1 cut(s)	267
PshAI	GACNNNNGTC	2 cut(s)	350, 1839
Psp124BI	GAGCTC	1 cut(s)	746
Psp1406I	AACGTT	4 cut(s)	514, 988, 1822, 3343
Psp6I	CCWGG	6 cut(s)	145, 603, 1013, 1092, 1149, 3985
PspCI	CACGTG	1 cut(s)	3818
PspEI	GGTNACC	1 cut(s)	1832
PspFI	CCCAGC	2 cut(s)	3023, 3110
PspGI	CCWGG	6 cut(s)	145, 603, 1013, 1092, 1149, 3985
PspOMI	GGGCCC	1 cut(s)	2939
PspPI	GGNCC	3 cut(s)	125, 2939, 2940
PstI	CTGCAG	2 cut(s)	2564, 4020
PstNI	CAGNNNCTG	2 cut(s)	2759, 3131
PsuI	RGATCY	4 cut(s)	1246, 3553, 3599, 4134
PvuII	CAGCTG	2 cut(s)	3194, 3889
RruI	TCGCGA	1 cut(s)	1351
RsaI	GTAC	9 cut(s)	26, 144, 876, 1088, 1486, 2371, 3584, 3659, 4233
RsaNI	GTAC	9 cut(s)	25, 143, 875, 1087, 1485, 2370, 3583, 3658, 4232
SacI	GAGCTC	1 cut(s)	746
SapI	GCTCTTC	1 cut(s)	3210
SatI	GCNGC	7 cut(s)	712, 764, 1135, 1554, 2047, 2124, 2438
Sau96I	GGNCC	3 cut(s)	125, 2939, 2940
SbfI	CCTGCAGG	1 cut(s)	2564
ScaI	AGTACT	1 cut(s)	876
SchI	GAGTC	6 cut(s)	110, 1703, 2780, 2939, 3404, 4208
ScrFI	CCNGG	8 cut(s)	147, 605, 1015, 1094, 1151, 2406, 3874, 3987
SdaI	CCTGCAGG	1 cut(s)	2564
SduI	GDGCHC	6 cut(s)	582, 746, 2943, 3306, 3450, 3580
SfaNI	GCATC	9 cut(s)	226, 2384, 2536, 2705, 3097, 3112, 3118, 3163, 3226
SfcI	CTRYAG	4 cut(s)	2142, 2560, 3451, 4016
SfuI	TTCGAA	1 cut(s)	477
SmlI	CTYRAG	5 cut(s)	305, 443, 1807, 2041, 2773
SmoI	CTYRAG	5 cut(s)	305, 443, 1807, 2041, 2773
Sse8387I	CCTGCAGG	1 cut(s)	2564
SspI	AATATT	4 cut(s)	1291, 2054, 2213, 2623
SspMI	CTAG	4 cut(s)	848, 1679, 2349, 2493
SstI	GAGCTC	1 cut(s)	746
StyD4I	CCNGG	8 cut(s)	145, 603, 1013, 1092, 1149, 2404, 3872, 3985
StyI	CCWWGG	6 cut(s)	1837, 2421, 2725, 3052, 3534, 4074
TaiI	ACGT	9 cut(s)	517, 677, 790, 991, 1825, 3255, 3346, 3674, 3820
TaqI	TCGA	6 cut(s)	477, 571, 1782, 2208, 2677, 4149
TatI	WGTACW	5 cut(s)	874, 1086, 1484, 2369, 3582
TauI	GCSGC	2 cut(s)	714, 766
TfiI	GAWTC	5 cut(s)	2030, 2570, 2733, 3794, 4052
TscAI	CASTG	4 cut(s)	1362, 3151, 3190, 3585
TseFI	GTSAC	7 cut(s)	113, 932, 1219, 1585, 1832, 2746, 3975
TseI	GCWGC	5 cut(s)	1134, 1553, 2046, 2123, 2437
Tsp45I	GTSAC	7 cut(s)	113, 932, 1219, 1585, 1832, 2746, 3975
TspGWI	ACGGA	4 cut(s)	1643, 2912, 4160, 4246
TspRI	CASTG	4 cut(s)	1362, 3151, 3190, 3585
Van91I	CCANNNNNTGG	1 cut(s)	3892
VneI	GTGCAC	1 cut(s)	3576
XceI	RCATGY	3 cut(s)	271, 1624, 3380
XcmI	CCANNNNNNNNNTGG	2 cut(s)	397, 3889
XmiI	GTMKAC	1 cut(s)	537
XmnI	GAANNNNTTC	3 cut(s)	320, 515, 3345
XspI	CTAG	4 cut(s)	848, 1679, 2349, 2493
ZrmI	AGTACT	1 cut(s)	876
Zsp2I	ATGCAT	3 cut(s)	721, 2646, 2698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.