Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Forward (+)

77345033 .. 77354205

Gene Structure 9173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG597600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3930 bp

ATGAAGAGAATACGAGACGATGTGTACGGTGGTGCTGGTAGTGGTGGTGTTGGTGTTGCTGGTGCTGGTGGTGGTGGTTCTTCTCAATTGAAACGGCCGGTTGTTGCTTCTTCGCGCGGTGACTCAAATGGGCCACCCCAACTCCAAGTACCAGGAGGAGGACGCGCAGTAGGTGAAGTAATAGCTACCGTTGGAGTAGCTACTGTTGGAGTAGGTGCCTCTCAGAAATTGACGACGAATGATGCTCTTACATACCTCAAAGAAGTGAAGGACATGTTTCAAGACCAAAGAGAAAAGTATGATATGTTTCTTGAGGTCATGAAGGATTTCAAGGCTCAAAGAACTGACACGACAGGTGTCATTGCAAGAGTAAAGGAACTGTTTAAAGGGCATACCAAGTTAATTTTGGGGTTTAATACCTTCTTGCCAAAGGGTTATGAGATCACTCTTGAGGAAGTGGAACCAAAAAAGACTGTTGAGTTCGAAGAAGCTATCAGTTTTGTAAACAAGATCAAGAAACGTTTCCAAAATGATGAGCAAGTATACAAGTCATTCTTAGACATACTGAATATGTATCGAAAGGAGCACAAGGACATAAATGAGGTTTACCAGGAGGTTGCTTCTCTATTTGATGACCAACCAGATTTGCTGGATGAGTTCACCAGATTTTTACCAGATACGTCAGCAACAACTTCAACTCATCAGGGGCAATATGGCCGCAATGCATATCCCCGTTTTAATGAGCGGAGCTCTGCTACACCAACTTTGCGGCCAATGCCTATTGACAAGCAACGTAGGCGGGATAAGATTACTTCTCATGGTGATCATGATATTAGTGTTGATCGTCCTGAGCTAGATGATGACAAAGGAATGATGAAAGTACTGAAGGAGCAGAAAAAGCGTTTTCCTGAGAAGGAGAACAGGGATAGGAGAATTCGTGACCATGAAGATAGAGAAGTAGAGACTGATAACAACAGGGACTACAACTTGCAACGTTTTCCAGAGAAAAGGAAATCTTCCAGGAAGGTTGAAGGTTTTGGAGCGAATGCTAACTTTGCTCCTTATGATGACAAAGATACCTTGAAGAGTAAGTACAGCCAGGCATTCGGTTTCTGTGAGAAAGTTAAGGAGCGCTTGTGCAGCCAAGATGACTACCAGGCATTTTTGAAGTGCCTTCACATTTATAGCAATGGCATTATTAAAAGGAATGATTTACAAAATTTGGTGACTGATTTATTGGGGAAGTATCCAGATCTTATGGACGAATTTAATGATTTCTTGGAGCGCTGTGAGAATATTGATGGGTTCCTTGCTGGTGTAATGAGAAAATCTCTGAGTAGTGATGGTCATTTATCGCGATCAGTGAAGGTAGAGGACAAAGACAAGGAGCCAAAGCGTGAAATGGAGGGAGTTAAAGAAAAGGAAAGATACAGGGAGAAGTATTGGGCGAAATCTATTCAAGAGCTTGACCTCTCTAACTGTGAACGCTGTACTCCAAGCTATCGCCTTCTTCCAGAAGATTATCCAATACCCTCAGCAAGCCAGAGATCAGAACTTGCTGCTCAGGTCTTGAATGACCATTGGGTATCTGTGACTTCAGGAAGTGAAGATTATTCTTTTAAACACATGCGCAGAAATCAATATGAAGAAAGTCTTTTCCGTTGTGAAGATGATAGGTTTGAGCTAGATATGTTGTTGGAGTCAGTAAGCTCAACTTCTAAGCGAGCAGAGGAACTGTTGAACAGCATGAATGAAAATAAACTCAGTATGGAAACTCAAATTCATATCGAAGACCACTTTACTGCTCTAAACTTGAGGTGCATTGAACGTTTATATGGTGACCATGGTCTTGATGTGATGGACATACTGCGGAAAAGTCCAACGCTCGCTCTGCCAGTCATATTAACTCGCCTGAAACAGAAACAAGAGGAATGGACAAGGTGTAGAGCGGATTTCAACAAGGTTTGGGCTGATATATATGCCAAAAACCATTACAAATCACTTGATCACCGAAGCTTTTATTTCAAGCAACAAGATTCAAAGAACTTGAGCAGCAAATATTTGGTGGCTGAGATCAAGGAATTGAAAGAGAAAAAACAGATAGAGGACGATATTCTTCTGGCTGTTGCTGCTGGAAACAGGCAATCTATAGTTCCACATCTGGAGTATGAATACCTTGATATCAGCATTCATGAGGACTTGTATAAACTTGTCGAATATTCATGTGACGAGCTTAGCTCAACAAAAGAACAGTTAAATAAGGCTATGAGACTTTATACTACCTTTTTGGAGCCAATGTTGGGCATTCCTTCTCGGCCTCATGGTTCAGAGGATGATGAAGATGTGGGCAAAGCTAGGAAGGGCGCTATGAATTGTACTGCATCAAGCAATGGAGAAAGTGATGGAAGTCCCGGTGGTGAGACTACCATGGTAAATTTTAAGCAGCCTAAATCTGGGGGTAATGAAGATGAAAATGCTTTAGCAGATGTGGCAAGTTCTAGGAATACTTTGGCTAATGGGGATACCTTAGCCAAAGAAGATGGCAGTTGCGATGCAGATAATGCCTGCAGGGATGATTCAATGTGTAATAACATTCGGGTAGAGAAAGAAGTCAAAGAACAGAAGAATATTAGTATCCCTGATAAAATGCATGGGTCAAGTAAACCGGTTGCCTCCATTGATCGAGTAGGCAATTCCAATGCATCATTTGCAGTTGGAGGAGAAAATAACCATGGAAGAATCAGCTTGGAAGTGACATCAGGGTCTGTTGCAACTACCTCAAGACCCTACGACTCCATTAGTGAAAATGAGCAATCAAAGAAAACTAATGCTGATCCCGCTGTTCCTTCATCAGAGGGTGGTGATATTGTAAAACCTGCTTCATTTGGTAATGGGTTGTTTACGGAAAGCACTAAAGTCAACAGTCGTCATGAAGAGTCTGTTGGGCCCTCTAAAATTGAGAAGGAAGAAGGTGAATTATCACCGGTCGGTGATTATGGGGAGGATAACTTCGTTGTCTCTGGAGACGCTGGGGTGCAGGCTTTGCCTAAGGAAAACCATGGTGTTGAAAGACAATATCAATCTGGAAACGGGGAAGAAATTTGCTCTCAGGATGCTGGGGAAAATGATGCAGATGCTGATGATGAAAACAGTGAAAATGTTTCTGAGGCTGGTGAAGATGCCTCTGGCAGTGAGACAGCTGGTGATGAGTGTTCCCGAGAAGAGCATGGAGAGGAGGAGGATGCTGAACATGATGACGTTGATGGTAAGGCTGAGAGTGAAGGTGAGGCGGAAGGGATGGCTGATGGGCACCTTGTTGGAGATGGCTGTTCCTTGCAATTGCCGGAACGTTTTCTTATGTCTGTGAAGCCTCTTGCAAAGCATGTATCGGCACCTTTAGTTGACGAAAAGAAAGACTCTCGTGTTTTTTATGGAAATGATAACTTCTATGTGCTCTATAGGCTTCATCAAATTTTATACGAAAGGATTTTATCTGCAAAATCAAATTCAGTAGGAGCAGAAACTAAGTGGAGAACTTCCAAGGATGGCAACCCTCCAGATCTTTATGGCAGGTTTATGGGTGCACTGTACAATTTGCTTGATGGATCTGCTGATAATGCAAAATTTGAGGATGAGTGCCGAGCTATTATTGGAAATCAGTCGTACATCTTATTCACGTTGGACAAGTTAATATATAAATTTGTTAAACAGCTTCAAACGGTTGCAACTGATGAGATGGACAATAAGCTTCTTCAGTTATATGAATATGAAAAGTCTCGGAAAAAAGGGAAGCTAATTGATTCTGTCTATTTTGAAAACACACGTGTCCTTGTTCACGAGGAGAACATTTACAGATTGGAATTCGTAAGTCATCCGACACTTGTCTTCCCAAACCACGAAACCCTAAATTTACTTTTCTGTCCGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1309

Amino Acids

147.54

Weight (kDa)

5.09

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	98 - 142	2.8e-17	Paired amphipathic helix repeat
PAH	PF02671	180 - 224	4.1e-18	Paired amphipathic helix repeat
PAH	PF02671	384 - 427	5.6e-15	Paired amphipathic helix repeat
Sin3_corepress	PF08295	495 - 587	2.2e-34	Sin3 family co-repressor
Sin3a_C	PF16879	1143 - 1291	1.2e-30	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2761
Acc16I	TGCGCA	1 cut(s)	1631
Acc36I	ACCTGC	2 cut(s)	2884, 3561
AccB1I	GGYRCC	3 cut(s)	215, 3309, 3391
AccBSI	CCGCTC	2 cut(s)	745, 1949
AccI	GTMKAC	1 cut(s)	543
AccII	CGCG	4 cut(s)	115, 117, 165, 1357
AciI	CCGC	9 cut(s)	117, 718, 745, 769, 799, 1870, 1949, 2838, 3290
AclI	AACGTT	4 cut(s)	520, 994, 1828, 3349
AclWI	GGATC	2 cut(s)	2828, 3613
AcoI	YGGCCR	3 cut(s)	95, 715, 770
AcuI	CTGAAG	3 cut(s)	905, 1581, 3737
AcvI	CACGTG	1 cut(s)	3824
AfaI	GTAC	8 cut(s)	26, 150, 882, 1094, 1492, 2377, 3590, 3665
AfeI	AGCGCT	2 cut(s)	1133, 1286
AfiI	CCNNNNNNNGG	3 cut(s)	158, 2300, 2453
AflIII	ACRYGT	3 cut(s)	273, 3821, 3823
AgeI	ACCGGT	2 cut(s)	2665, 2983
AjnI	CCWGG	5 cut(s)	151, 609, 1019, 1098, 1155
AjuI	GAANNNNNNNTTGG	2 cut(s)	2925, 2957
Alw21I	GWGCWC	4 cut(s)	588, 752, 3456, 3586
Alw26I	GTCTC	8 cut(s)	9, 956, 2263, 2414, 3018, 3022, 3188, 3780
Alw44I	GTGCAC	1 cut(s)	3582
AlwI	GGATC	2 cut(s)	2828, 3613
AlwNI	CAGNNNCTG	2 cut(s)	2765, 3137
Ama87I	CYCGRG	1 cut(s)	3216
Aor51HI	AGCGCT	2 cut(s)	1133, 1286
AoxI	GGCC	6 cut(s)	95, 131, 715, 770, 2315, 2945
ApaI	GGGCCC	1 cut(s)	2949
ApaLI	GTGCAC	1 cut(s)	3582
ApeKI	GCWGC	5 cut(s)	1140, 1559, 2052, 2129, 2443
AsiGI	ACCGGT	2 cut(s)	2665, 2983
Asp700I	GAANNNNTTC	3 cut(s)	326, 521, 3351
AspLEI	GCGC	6 cut(s)	117, 167, 1134, 1287, 1632, 2366
AspS9I	GGNCC	3 cut(s)	131, 2945, 2946
AsuC2I	CCSGG	1 cut(s)	2412
AsuII	TTCGAA	1 cut(s)	483
AvaI	CYCGRG	1 cut(s)	3216
AxyI	CCTNAGG	1 cut(s)	3048
BaeGI	GKGCMC	3 cut(s)	2949, 3312, 3586
BanI	GGYRCC	3 cut(s)	215, 3309, 3391
BanII	GRGCYC	2 cut(s)	752, 2949
BarI	GAAGNNNNNNTAC	2 cut(s)	1076, 1108
BauI	CACGAG	2 cut(s)	3420, 3836
BbrPI	CACGTG	1 cut(s)	3824
BbsI	GAAGAC	2 cut(s)	1797, 3877
Bbv12I	GWGCWC	4 cut(s)	588, 752, 3456, 3586
BbvCI	CCTCAGC	1 cut(s)	1534
BbvI	GCAGC	5 cut(s)	1152, 1546, 2064, 2116, 2455
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	5 cut(s)	153, 611, 1021, 1100, 1157
BciVI	GTATCC	3 cut(s)	1257, 2515, 2645
BclI	TGATCA	2 cut(s)	823, 2005
BcnI	CCSGG	1 cut(s)	2412
BcoDI	GTCTC	8 cut(s)	9, 956, 2263, 2414, 3018, 3022, 3188, 3780
BfaI	CTAG	4 cut(s)	854, 1685, 2355, 2499
BfmI	CTRYAG	3 cut(s)	2148, 2566, 3457
BfoI	RGCGCY	3 cut(s)	1135, 1288, 2367
BfuAI	ACCTGC	2 cut(s)	2884, 3561
BfuI	GTATCC	3 cut(s)	1257, 2515, 2645
BglII	AGATCT	2 cut(s)	1252, 3559
BisI	GCNGC	7 cut(s)	718, 770, 1141, 1560, 2053, 2130, 2444
BlpI	GCTNAGC	1 cut(s)	2234
BlsI	GCNGC	7 cut(s)	719, 771, 1142, 1561, 2054, 2131, 2445
BmcAI	AGTACT	1 cut(s)	882
Bme1390I	CCNGG	6 cut(s)	153, 611, 1021, 1100, 1157, 2412
BmeT110I	CYCGRG	1 cut(s)	3216
BmgT120I	GGNCC	3 cut(s)	131, 2945, 2946
BmiI	GGNNCC	8 cut(s)	217, 462, 1307, 1389, 2292, 2947, 3311, 3393
BmrFI	CCNGG	6 cut(s)	153, 611, 1021, 1100, 1157, 2412
BmsI	GCATC	9 cut(s)	232, 2390, 2542, 2711, 3103, 3118, 3124, 3169, 3232
BoxI	GACNNNNGTC	3 cut(s)	356, 1845, 3881
BpiI	GAAGAC	2 cut(s)	1797, 3877
BplI	GAGNNNNNCTC	6 cut(s)	734, 766, 1315, 1347, 2222, 2254
BpmI	CTGGAG	3 cut(s)	2183, 3042, 3540
Bpu10I	CCTNAGC	4 cut(s)	849, 1534, 1563, 2527
Bpu1102I	GCTNAGC	1 cut(s)	2234
Bpu14I	TTCGAA	1 cut(s)	483
BpuEI	CTTGAG	5 cut(s)	332, 470, 1834, 2068, 2764
BpuMI	CCSGG	1 cut(s)	2412
BsaAI	YACGTR	1 cut(s)	3824
BsaJI	CCNNGG	5 cut(s)	1843, 2427, 2731, 3058, 3540
BsaWI	WCCGGW	2 cut(s)	2665, 2983
BsaXI	ACNNNNNCTCC	8 cut(s)	126, 156, 922, 952, 1121, 1151, 2282, 2312
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 2300, 2453
Bse118I	RCCGGY	3 cut(s)	97, 2665, 2983
Bse1I	ACTGG	1 cut(s)	1895
Bse21I	CCTNAGG	1 cut(s)	3048
Bse3DI	GCAATG	4 cut(s)	360, 727, 1195, 2395
BseBI	CCWGG	5 cut(s)	153, 611, 1021, 1100, 1157
BseDI	CCNNGG	5 cut(s)	1843, 2427, 2731, 3058, 3540
BseGI	GGATG	9 cut(s)	658, 2338, 2578, 3118, 3247, 3303, 3550, 3637, 3871
BseLI	CCNNNNNNNGG	3 cut(s)	158, 2300, 2453
BseMI	GCAATG	4 cut(s)	360, 727, 1195, 2395
BseNI	ACTGG	1 cut(s)	1895
BseRI	GAGGAG	5 cut(s)	171, 2733, 3248, 3251, 3854
BseSI	GKGCMC	3 cut(s)	2949, 3312, 3586
BseX3I	CGGCCG	1 cut(s)	95
BseXI	GCAGC	5 cut(s)	1152, 1546, 2064, 2116, 2455
BseYI	CCCAGC	2 cut(s)	3029, 3116
BsgI	GTGCAG	2 cut(s)	1159, 3056
Bsh1236I	CGCG	4 cut(s)	115, 117, 165, 1357
Bsh1285I	CGRYCG	2 cut(s)	98, 2988
BshFI	GGCC	6 cut(s)	97, 133, 717, 772, 2317, 2947
BshNI	GGYRCC	3 cut(s)	215, 3309, 3391
BshTI	ACCGGT	2 cut(s)	2665, 2983
BsiEI	CGRYCG	2 cut(s)	98, 2988
BsiHKAI	GWGCWC	4 cut(s)	588, 752, 3456, 3586
BsiHKCI	CYCGRG	1 cut(s)	3216
BsiSI	CCGG	5 cut(s)	98, 2412, 2666, 2984, 3344
BslFI	GGGAC	2 cut(s)	992, 2394
BslI	CCNNNNNNNGG	3 cut(s)	158, 2300, 2453
BsmAI	GTCTC	8 cut(s)	9, 956, 2263, 2414, 3018, 3022, 3188, 3780
BsmBI	CGTCTC	2 cut(s)	9, 3018
BsmFI	GGGAC	2 cut(s)	992, 2394
BsmI	GAATGC	4 cut(s)	1051, 1103, 2187, 2304
BsnI	GGCC	6 cut(s)	97, 133, 717, 772, 2317, 2947
BsoBI	CYCGRG	1 cut(s)	3216
Bsp119I	TTCGAA	1 cut(s)	483
Bsp120I	GGGCCC	1 cut(s)	2945
Bsp1286I	GDGCHC	6 cut(s)	588, 752, 2949, 3312, 3456, 3586
Bsp1407I	TGTACA	1 cut(s)	3588
Bsp1720I	GCTNAGC	1 cut(s)	2234
Bsp19I	CCATGG	4 cut(s)	1843, 2427, 2731, 3058
Bsp68I	TCGCGA	1 cut(s)	1357
BspACI	CCGC	9 cut(s)	117, 718, 745, 769, 799, 1870, 1949, 2838, 3290
BspANI	GGCC	6 cut(s)	97, 133, 717, 772, 2317, 2947
BspFNI	CGCG	4 cut(s)	115, 117, 165, 1357
BspHI	TCATGA	4 cut(s)	318, 826, 2191, 2929
BspLI	GGNNCC	8 cut(s)	217, 462, 1307, 1389, 2292, 2947, 3311, 3393
BspMAI	CTGCAG	1 cut(s)	2570
BspMI	ACCTGC	2 cut(s)	2884, 3561
BspPI	GGATC	2 cut(s)	2828, 3613
BspQI	GCTCTTC	1 cut(s)	3216
BspT104I	TTCGAA	1 cut(s)	483
BspT107I	GGYRCC	3 cut(s)	215, 3309, 3391
BsrBI	CCGCTC	2 cut(s)	745, 1949
BsrDI	GCAATG	4 cut(s)	360, 727, 1195, 2395
BsrFI	RCCGGY	3 cut(s)	97, 2665, 2983
BsrGI	TGTACA	1 cut(s)	3588
BsrI	ACTGG	1 cut(s)	1895
BssAI	RCCGGY	3 cut(s)	97, 2665, 2983
BssECI	CCNNGG	5 cut(s)	1843, 2427, 2731, 3058, 3540
BssNAI	GTATAC	1 cut(s)	544
BssSI	CACGAG	2 cut(s)	3420, 3836
BssT1I	CCWWGG	5 cut(s)	1843, 2427, 2731, 3058, 3540
Bst1107I	GTATAC	1 cut(s)	544
Bst2BI	CACGAG	2 cut(s)	3420, 3836
Bst2UI	CCWGG	5 cut(s)	153, 611, 1021, 1100, 1157
Bst6I	CTCTTC	3 cut(s)	1079, 2928, 3216
BstAPI	GCANNNNNTGC	3 cut(s)	2561, 2708, 3043
BstAUI	TGTACA	1 cut(s)	3588
BstBAI	YACGTR	1 cut(s)	3824
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	5 cut(s)	1540, 1725, 1887, 2566, 3039
BstDSI	CCRYGG	4 cut(s)	1843, 2427, 2731, 3058
BstEII	GGTNACC	1 cut(s)	1838
BstF5I	GGATG	9 cut(s)	658, 2338, 2578, 3118, 3247, 3303, 3550, 3637, 3871
BstFNI	CGCG	4 cut(s)	115, 117, 165, 1357
BstH2I	RGCGCY	3 cut(s)	1135, 1288, 2367
BstHHI	GCGC	6 cut(s)	117, 167, 1134, 1287, 1632, 2366
BstMAI	GTCTC	8 cut(s)	9, 956, 2263, 2414, 3018, 3022, 3188, 3780
BstMCI	CGRYCG	2 cut(s)	98, 2988
BstNI	CCWGG	5 cut(s)	153, 611, 1021, 1100, 1157
BstNSI	RCATGY	3 cut(s)	277, 1630, 3386
BstPAI	GACNNNNGTC	3 cut(s)	356, 1845, 3881
BstPI	GGTNACC	1 cut(s)	1838
BstSCI	CCNGG	6 cut(s)	151, 609, 1019, 1098, 1155, 2410
BstSFI	CTRYAG	3 cut(s)	2148, 2566, 3457
BstSLI	GKGCMC	3 cut(s)	2949, 3312, 3586
BstUI	CGCG	4 cut(s)	115, 117, 165, 1357
BstV1I	GCAGC	5 cut(s)	1152, 1546, 2064, 2116, 2455
BstV2I	GAAGAC	2 cut(s)	1797, 3877
BstX2I	RGATCY	3 cut(s)	1252, 3559, 3605
BstYI	RGATCY	3 cut(s)	1252, 3559, 3605
BstZ17I	GTATAC	1 cut(s)	544
BstZI	CGGCCG	1 cut(s)	95
Bsu36I	CCTNAGG	1 cut(s)	3048
BsuI	GTATCC	3 cut(s)	1257, 2515, 2645
BsuRI	GGCC	6 cut(s)	97, 133, 717, 772, 2317, 2947
BtgI	CCRYGG	4 cut(s)	1843, 2427, 2731, 3058
BtgZI	GCGATG	1 cut(s)	2565
BtsCI	GGATG	9 cut(s)	658, 2338, 2578, 3118, 3247, 3303, 3550, 3637, 3871
BtsI	GCAGTG	1 cut(s)	3196
BtsIMutI	CAGTG	4 cut(s)	1368, 3157, 3196, 3584
BtuMI	TCGCGA	1 cut(s)	1357
BveI	ACCTGC	2 cut(s)	2884, 3561
Cac8I	GCNNGC	5 cut(s)	1540, 1725, 1887, 2566, 3039
CaiI	CAGNNNCTG	2 cut(s)	2765, 3137
CciI	TCATGA	4 cut(s)	318, 826, 2191, 2929
CfoI	GCGC	6 cut(s)	117, 167, 1134, 1287, 1632, 2366
Cfr10I	RCCGGY	3 cut(s)	97, 2665, 2983
Cfr13I	GGNCC	3 cut(s)	131, 2945, 2946
CseI	GACGC	2 cut(s)	171, 3035
Csp6I	GTAC	8 cut(s)	25, 149, 881, 1093, 1491, 2376, 3589, 3664
CspAI	ACCGGT	2 cut(s)	2665, 2983
CviQI	GTAC	8 cut(s)	25, 149, 881, 1093, 1491, 2376, 3589, 3664
DraI	TTTAAA	2 cut(s)	385, 1621
DrdI	GACNNNNNNGTC	1 cut(s)	2761
DseDI	GACNNNNNNGTC	1 cut(s)	2761
EaeI	YGGCCR	3 cut(s)	95, 715, 770
EagI	CGGCCG	1 cut(s)	95
Eam1104I	CTCTTC	3 cut(s)	1079, 2928, 3216
EarI	CTCTTC	3 cut(s)	1079, 2928, 3216
EciI	GGCGGA	1 cut(s)	3305
Ecl136II	GAGCTC	1 cut(s)	750
EclXI	CGGCCG	1 cut(s)	95
Eco130I	CCWWGG	5 cut(s)	1843, 2427, 2731, 3058, 3540
Eco24I	GRGCYC	2 cut(s)	752, 2949
Eco32I	GATATC	1 cut(s)	2182
Eco47III	AGCGCT	2 cut(s)	1133, 1286
Eco52I	CGGCCG	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	750
Eco57I	CTGAAG	3 cut(s)	905, 1581, 3737
Eco72I	CACGTG	1 cut(s)	3824
Eco81I	CCTNAGG	1 cut(s)	3048
Eco88I	CYCGRG	1 cut(s)	3216
Eco91I	GGTNACC	1 cut(s)	1838
EcoICRI	GAGCTC	1 cut(s)	750
EcoO109I	RGGNCCY	1 cut(s)	2946
EcoO65I	GGTNACC	1 cut(s)	1838
EcoRI	GAATTC	2 cut(s)	933, 3860
EcoRII	CCWGG	5 cut(s)	151, 609, 1019, 1098, 1155
EcoRV	GATATC	1 cut(s)	2182
EcoT14I	CCWWGG	5 cut(s)	1843, 2427, 2731, 3058, 3540
EcoT22I	ATGCAT	3 cut(s)	727, 2652, 2704
EcoT38I	GRGCYC	2 cut(s)	752, 2949
ErhI	CCWWGG	5 cut(s)	1843, 2427, 2731, 3058, 3540
Esp3I	CGTCTC	2 cut(s)	9, 3018
FaqI	GGGAC	2 cut(s)	992, 2394
FauI	CCCGC	2 cut(s)	792, 2845
FbaI	TGATCA	2 cut(s)	823, 2005
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	7 cut(s)	718, 770, 1141, 1560, 2053, 2130, 2444
FokI	GGATG	9 cut(s)	665, 2345, 2585, 3125, 3254, 3310, 3557, 3644, 3858
FriOI	GRGCYC	2 cut(s)	752, 2949
Fsp4HI	GCNGC	7 cut(s)	718, 770, 1141, 1560, 2053, 2130, 2444
FspBI	CTAG	4 cut(s)	854, 1685, 2355, 2499
FspI	TGCGCA	1 cut(s)	1631
GlaI	GCGC	6 cut(s)	116, 166, 1133, 1286, 1631, 2365
GluI	GCNGC	7 cut(s)	718, 770, 1141, 1560, 2053, 2130, 2444
GsaI	CCCAGC	2 cut(s)	3033, 3120
GsuI	CTGGAG	3 cut(s)	2183, 3042, 3540
HaeII	RGCGCY	3 cut(s)	1135, 1288, 2367
HaeIII	GGCC	6 cut(s)	97, 133, 717, 772, 2317, 2947
HapII	CCGG	5 cut(s)	98, 2412, 2666, 2984, 3344
HgaI	GACGC	2 cut(s)	171, 3035
HhaI	GCGC	6 cut(s)	117, 167, 1134, 1287, 1632, 2366
Hin6I	GCGC	6 cut(s)	115, 165, 1132, 1285, 1630, 2364
HinP1I	GCGC	6 cut(s)	115, 165, 1132, 1285, 1630, 2364
HincII	GTYRAC	2 cut(s)	2920, 3403
HindII	GTYRAC	2 cut(s)	2920, 3403
HindIII	AAGCTT	2 cut(s)	2014, 3746
HinfI	GANTC	9 cut(s)	122, 1700, 2036, 2576, 2739, 2792, 2936, 3416, 3800
HpaII	CCGG	5 cut(s)	98, 2412, 2666, 2984, 3344
Hpy188I	TCNGA	9 cut(s)	225, 1335, 1552, 2329, 2854, 3166, 3780, 3876, 3924
Hpy99I	CGWCG	1 cut(s)	238
HpyCH4IV	ACGT	9 cut(s)	520, 680, 793, 994, 1828, 3258, 3349, 3677, 3823
HpySE526I	ACGT	9 cut(s)	520, 680, 793, 994, 1828, 3258, 3349, 3677, 3823
HspAI	GCGC	6 cut(s)	115, 165, 1132, 1285, 1630, 2364
Ksp22I	TGATCA	2 cut(s)	823, 2005
LguI	GCTCTTC	1 cut(s)	3216
Lsp1109I	GCAGC	5 cut(s)	1152, 1546, 2064, 2116, 2455
LweI	GCATC	9 cut(s)	232, 2390, 2542, 2711, 3103, 3118, 3124, 3169, 3232
MaeI	CTAG	4 cut(s)	854, 1685, 2355, 2499
MaeII	ACGT	9 cut(s)	520, 680, 793, 994, 1828, 3258, 3349, 3677, 3823
MaeIII	GTNAC	7 cut(s)	119, 938, 1225, 1591, 1838, 2225, 2752
MbiI	CCGCTC	2 cut(s)	745, 1949
MfeI	CAATTG	2 cut(s)	86, 3338
MflI	RGATCY	3 cut(s)	1252, 3559, 3605
MhlI	GDGCHC	6 cut(s)	588, 752, 2949, 3312, 3456, 3586
MlyI	GAGTC	5 cut(s)	116, 1709, 2786, 2945, 3410
MmeI	TCCRAC	8 cut(s)	172, 187, 1677, 1904, 2695, 3298, 3660, 3899
Mph1103I	ATGCAT	3 cut(s)	727, 2652, 2704
MroXI	GAANNNNTTC	3 cut(s)	326, 521, 3351
MspA1I	CMGCKG	2 cut(s)	2840, 3200
MspI	CCGG	5 cut(s)	98, 2412, 2666, 2984, 3344
MspR9I	CCNGG	6 cut(s)	153, 611, 1021, 1100, 1157, 2412
MunI	CAATTG	2 cut(s)	86, 3338
Mva1269I	GAATGC	4 cut(s)	1051, 1103, 2187, 2304
MvaI	CCWGG	5 cut(s)	153, 611, 1021, 1100, 1157
MvnI	CGCG	4 cut(s)	115, 117, 165, 1357
NciI	CCSGG	1 cut(s)	2412
NcoI	CCATGG	4 cut(s)	1843, 2427, 2731, 3058
NlaIV	GGNNCC	8 cut(s)	217, 462, 1307, 1389, 2292, 2947, 3311, 3393
NmeAIII	GCCGAG	2 cut(s)	2293, 3665
NmuCI	GTSAC	7 cut(s)	119, 938, 1225, 1591, 1838, 2225, 2752
NruI	TCGCGA	1 cut(s)	1357
NsbI	TGCGCA	1 cut(s)	1631
NsiI	ATGCAT	3 cut(s)	727, 2652, 2704
NspI	RCATGY	3 cut(s)	277, 1630, 3386
NspV	TTCGAA	1 cut(s)	483
PagI	TCATGA	4 cut(s)	318, 826, 2191, 2929
PciI	ACATGT	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	3216
PctI	GAATGC	4 cut(s)	1051, 1103, 2187, 2304
PdmI	GAANNNNTTC	3 cut(s)	326, 521, 3351
PfeI	GAWTC	4 cut(s)	2036, 2576, 2739, 3800
PfoI	TCCNGGA	1 cut(s)	1019
PinAI	ACCGGT	2 cut(s)	2665, 2983
PkrI	GCNGC	7 cut(s)	719, 771, 1142, 1561, 2054, 2131, 2445
PleI	GAGTC	5 cut(s)	116, 1708, 2786, 2944, 3410
PmaCI	CACGTG	1 cut(s)	3824
PmlI	CACGTG	1 cut(s)	3824
PpsI	GAGTC	5 cut(s)	116, 1708, 2786, 2944, 3410
Ppu21I	YACGTR	1 cut(s)	3824
PscI	ACATGT	1 cut(s)	273
PshAI	GACNNNNGTC	3 cut(s)	356, 1845, 3881
Psp124BI	GAGCTC	1 cut(s)	752
Psp1406I	AACGTT	4 cut(s)	520, 994, 1828, 3349
Psp6I	CCWGG	5 cut(s)	151, 609, 1019, 1098, 1155
PspCI	CACGTG	1 cut(s)	3824
PspEI	GGTNACC	1 cut(s)	1838
PspFI	CCCAGC	2 cut(s)	3029, 3116
PspGI	CCWGG	5 cut(s)	151, 609, 1019, 1098, 1155
PspN4I	GGNNCC	8 cut(s)	217, 462, 1307, 1389, 2292, 2947, 3311, 3393
PspOMI	GGGCCC	1 cut(s)	2945
PspPI	GGNCC	3 cut(s)	131, 2945, 2946
PstI	CTGCAG	1 cut(s)	2570
PstNI	CAGNNNCTG	2 cut(s)	2765, 3137
PsuI	RGATCY	3 cut(s)	1252, 3559, 3605
PvuII	CAGCTG	1 cut(s)	3200
RruI	TCGCGA	1 cut(s)	1357
RsaI	GTAC	8 cut(s)	26, 150, 882, 1094, 1492, 2377, 3590, 3665
RsaNI	GTAC	8 cut(s)	25, 149, 881, 1093, 1491, 2376, 3589, 3664
SacI	GAGCTC	1 cut(s)	752
SapI	GCTCTTC	1 cut(s)	3216
SatI	GCNGC	7 cut(s)	718, 770, 1141, 1560, 2053, 2130, 2444
Sau96I	GGNCC	3 cut(s)	131, 2945, 2946
SbfI	CCTGCAGG	1 cut(s)	2570
ScaI	AGTACT	1 cut(s)	882
SchI	GAGTC	5 cut(s)	116, 1709, 2786, 2945, 3410
ScrFI	CCNGG	6 cut(s)	153, 611, 1021, 1100, 1157, 2412
SdaI	CCTGCAGG	1 cut(s)	2570
SduI	GDGCHC	6 cut(s)	588, 752, 2949, 3312, 3456, 3586
SfaNI	GCATC	9 cut(s)	232, 2390, 2542, 2711, 3103, 3118, 3124, 3169, 3232
SfcI	CTRYAG	3 cut(s)	2148, 2566, 3457
SfuI	TTCGAA	1 cut(s)	483
SmlI	CTYRAG	5 cut(s)	311, 449, 1813, 2047, 2779
SmoI	CTYRAG	5 cut(s)	311, 449, 1813, 2047, 2779
Sse8387I	CCTGCAGG	1 cut(s)	2570
SsiI	CCGC	9 cut(s)	117, 718, 745, 769, 799, 1870, 1949, 2838, 3290
SspI	AATATT	4 cut(s)	1297, 2060, 2219, 2629
SspMI	CTAG	4 cut(s)	854, 1685, 2355, 2499
SstI	GAGCTC	1 cut(s)	752
StyD4I	CCNGG	6 cut(s)	151, 609, 1019, 1098, 1155, 2410
StyI	CCWWGG	5 cut(s)	1843, 2427, 2731, 3058, 3540
TaiI	ACGT	9 cut(s)	523, 683, 796, 997, 1831, 3261, 3352, 3680, 3826
TaqI	TCGA	5 cut(s)	483, 577, 1788, 2214, 2683
TatI	WGTACW	5 cut(s)	880, 1092, 1490, 2375, 3588
TauI	GCSGC	2 cut(s)	720, 772
TfiI	GAWTC	4 cut(s)	2036, 2576, 2739, 3800
TscAI	CASTG	4 cut(s)	1368, 3157, 3196, 3591
TseFI	GTSAC	7 cut(s)	119, 938, 1225, 1591, 1838, 2225, 2752
TseI	GCWGC	5 cut(s)	1140, 1559, 2052, 2129, 2443
Tsp45I	GTSAC	7 cut(s)	119, 938, 1225, 1591, 1838, 2225, 2752
TspGWI	ACGGA	2 cut(s)	1649, 2918
TspRI	CASTG	4 cut(s)	1368, 3157, 3196, 3591
VneI	GTGCAC	1 cut(s)	3582
XceI	RCATGY	3 cut(s)	277, 1630, 3386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	543
XmnI	GAANNNNTTC	3 cut(s)	326, 521, 3351
XspI	CTAG	4 cut(s)	854, 1685, 2355, 2499
ZrmI	AGTACT	1 cut(s)	882
Zsp2I	ATGCAT	3 cut(s)	727, 2652, 2704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.