Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Forward (+)

79249035 .. 79257141

Gene Structure 8107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021911

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4017 bp

ATGAAGAGAATACGAGACGATGTGTACGGAGGTGGTGGTAGTGGTGGTGTTGGTGTTGGTGTTGGTGGTGGTGGTTCTTCCCAATTGAAACGGCCGGTTGTTGCTTCTTCGCGCGGTGACTCAAATGGGCCACCCCCACTCCAAGTACAAGGAGGAGGAGGCGCGGTAGGTGGAGTAATAGCTACCGTTGGAGTAGCTACTGTTGGAGTAGGTGCCTCTCAGAAATTGACGACGAATGATGCTCTTACATACCTCAAAGAAGTAAAGGACATGTTTCAAGACCAAAGAGAAAAGTATGATATGTTTCTTGAGGTCATGAAGGATTTCAAGGCTCAAAGAACTGACACGACAGGTGTCATTGCAAGAGTAAAGGAACTGTTTAAAGGGCATACCAAGTTAATTTTGGGGTTTAATACCTTCTTGCCAAAGGGTTATGAGATCACGCTTGAGGAAGTGGAACCAAAAAAGACTGTTGAGTTCGAAGAAGCTATCAGTTTCGTAAACAAGATCAAGAAACGTTTCCAAAATGATGAGCAAGTATACAAGTCATTCTTAGACATACTGAATATGTATCGAAAGGAGCACAAGGACATAAATGAGGTTTACCAGGAGGTTGCTTCTCTATTTGATGACCAACCAGATTTGCTGGATGAGTTCACCAGATTTTTACCAGATACGTCAGCAACAACTTCAACTCATCAGGGGCAATATGGCCGCAATGCATATCCCCGTTTTAATGAGCGGAGCTCTGCTACACCAACTTTGCGGTCAATGCCTATTGACAAGCAACGTAGGCGGGATAAGATTACTTCTCATGGTGATCATGATATTAGTGTTGATCGTCCTGAGCTAGATGATGACAAAGGAATGATGAAAGTACTGAAGGAGCAGAGAAAGCGTTTTCCTGAGAAGGAGAATAGGGATAGGAGAATTCGTGACCATGAAGATAGAGAAGTAGAGACTGATAACAACAAGGACTACAACTTGCAGCGTTTTCCAGAGAAAAGGAAATCTGCCAGGAAGGTTGAAGGTTTTGGAGCGAATGCTAACTTTGCTCCTTATGATGACAAAGATACCTTGAAGAGTAAGTACAGCCAGGCATTCGGTTTCTGTGAGAAAGTTAAGGAGCGCTTGTGCAGCCAAGATGACTACCAGGCATTTTTGAAGTGCCTTCACATTTATAGCAATGGCATTATTAAAAGGAATGATTTACAAAATTTGGTGACTGATTTATTGGGGAAGTATCCAGATCTTATGGATGAATTTAATGATTTCTTGGAGCGCTGTGAGAATATTGATGGGTTCCTTGCTGGTGTAATGAGAAAATCTCTGAGTAGTGATGGTCATTTATCGCGATCAGTGAAGGTAGAGGACAAAGACAAGGAGCCAAAGCAAAGTCTTTTCCGTTGTGAAGATGATAGGTTTGAGCTAGATATGTTGTTGGAGTCAGTAAGCTCAACTTCTAAGCGAGCAGAGGAACTGTTGAACAGCATGAATGAAAATAAACTCAGTATGGAAACTCAAATTCATATCGAAGACCACTTTACTGCTCTAAACTTAAGGTGCATTGAACGTTTATATGGTGACCATGGTCTTGATGTGATGGACATACTGCGGAAAAGTCCAACGCTCGCACTGCCAGTCATATTAACTCGCCTGAAACAGAAACAAGAGGAATGGACAAGGTGTAGAGCGGATTTCAACAAGGTTTGGGCTGATATATATGCCAAAAATCATTACAAATCACTTGATCACCGAAGCTTTTATTTCAAGCAACAAGATTCAAAGAACTTGAGCAGCAAATATTTGGTGGCTGAGATCAAGGAATTGAAAGAGAAAAAACAGATAGAGGACGATATTCTTCTGGCTGTTGCTGCTGGAAACAGGCAATCTATAGTTCCACATCTGGAGTATGAATACCTTGATGTCAGCATTCATGAGGACTTGTATAAACTTGTCGAATATTCATGTGACGAGCTTAGCTCAACAAAAGAACAGTTAAATAAGGCTATGAGACTTTATACTACCTTTTTGGAGCCAATGTTGGGCATTCCTTCTCGGCCTCATGGTTCAGAGGATGATGAAGATGTGGACAAAGCTAGGAAGGGCGCTATGAATTGTACTGCATCAAGCAATGGAGAAAGTGATGGAAGTCCCGGTGGTGAGACTACCATGGTAAATTTTAAGCAGCCTAAATCTGGGGGTAATGAAGATGAAAATGCTTTAGCAGATGTGGCAAGTTCTAGGAATAGTTTGGCTAATGGGGATACCTTAGCCAAAGAAGATGGCAGTTGCGATGCAGATAATGCCTGCAGGGATGATTCAATCTGTAATAACATTCGGGTAGAGAAAGAAGTTAAAGAACAGAAGAATATGAGTATCCCTGATAAAATGCATGGGTCAAGTAAAGCGGTTGCCTCCATTGATCGAGTAGGCAATTCCAATGCATCATTTGCAGTTGGAGGAGAAAATAACCATGGAAGAATCAGCTTGGAAGTGACATCAGGGTCTGTTGCAACTACCTCAAGACCCTATGACTCCATTAGTGAAAATGAGCAATCAAAGAAAACTAATGCTGATCCTGCTGTTCCTTCATCAGAGGGTGGTGATATTGTAAAACCTGCTTCATTTGGTAATGGGGTGTTTACAGAAAGCACTAAAGTTAACAGTCGTCATGAAGAGTCTGTTGGGCCCTCTAAAATTGAGAAGGAAGAAGGTGAATTATCACCGGTCGGTGATTATGGGGAGGATAACTTCGTTGTCTCTGGAGACGCTGGGGTGCAGGCTTTGCCTAAGGAAAACCATGGTGTTGAAAGACAATATCAATCTGGAAACGTTGAAGAAATTTGCTCTCAGGATGCTGGGGAAAATGATGCAGATGCTGATGATGAAAACAGTGAAAATGTTTCTGAGGCTGGTGAAGATGCCTCTGGCAGTGAGACAGCTGGTGATGAGTGTTCCCGAGAAGAGCATGGAGAGGAGGAGGATGCTGAACATGATGACGTTGATGGTAAGGCTGAGAGTGAAGGTGAGGCTGAAGGGATGGCTGATGGGCACCTTGTTGGAGATGGCTGTTCCTTGCAATGGCCAGAACGTTTTCTTATGTCTGTGAAGCCTCTTGCAAAGCATGTATCGGCACCTTTAGTTGACGAAAAGAAAGACTCTCGTGTTTTTTATGGAAATGATAACTTCTATGTGCTCTATAGGCTTCATCAAATTTTATACGAAAGGATTTTATCTGCAAAATCAAATTCAGTAGGAGCAGAAACTAAGTGGAGAACTTCCAAGGATGGCAACCCTCCAGATCTTTATGGCAGGTTTATGAGTGCGCTGTACAATTTGCTTGATGGATCTGCTGATAATGCAAAATTTGAGGATGAGTGCCGAGCTATTATTGGAAATCAGTCGTACATCTTATTCACGTTGGACAAGTTAATATATAAATTTGTTAAACAGCTTCAAACGGTTGCAACTGATGAGATGGACAATAAGCTTCTTCAATTATATGAATATGAAAAGTCTCGGAAAAAAGGGAAGCTAATTGATTCTGTCTATTTTGAAAACTCACGTGTCCTTGTTCACGAGGAGAACATTTACAGATTGGAATTCTTCTCTGCACCCTCCCGGCTGTCCATCCAGCTGATGGACAGCGTGAGTGAAAAGCCTGAGGCGTCGGCAGTTTCTATGGAACCTAATTTTTCATCTTATCTGCACAATGATTTCCTGTCACTTTATCCTGGCAAAAAGGAGCCACATGGAATTACCCTGCAGAGAAACAAGCGCAAATATGCAGGGCAAGATGAATCCTCGGCGTTTTCCAATGCCATGGAGGGTGTTCAATTAGTCAATGGGTTGGAGTGTAAAATTGCTTGCAACTCATCCAAGATCTCTTATGTTCTCGACACAGAAGATTACTTCTTCCGTATGAGAAGGAAAAGGAGAAAGTCAGAGTCCAGATCACCATATTGTGATCAGACGAGGGTACAGCGGTTCCACAAATTCTTGTCCGTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1339

Amino Acids

150.48

Weight (kDa)

5.21

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	97 - 141	2.8e-17	Paired amphipathic helix repeat
PAH	PF02671	179 - 223	4.2e-18	Paired amphipathic helix repeat
PAH	PF02671	383 - 426	5.7e-15	Paired amphipathic helix repeat
Sin3_corepress	PF08295	459 - 502	3.7e-07	Sin3 family co-repressor
Sin3a_C	PF16879	1058 - 1306	1.5e-46	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2506
Acc36I	ACCTGC	2 cut(s)	2629, 3306
AccB1I	GGYRCC	3 cut(s)	212, 3054, 3136
AccB7I	CCANNNNNTGG	1 cut(s)	3643
AccBSI	CCGCTC	2 cut(s)	742, 1694
AccI	GTMKAC	1 cut(s)	540
AccII	CGCG	4 cut(s)	112, 114, 164, 1354
AclI	AACGTT	4 cut(s)	517, 1573, 2835, 3094
AclWI	GGATC	2 cut(s)	2573, 3358
AcoI	YGGCCR	3 cut(s)	92, 712, 3086
AcuI	CTGAAG	2 cut(s)	902, 3057
AcvI	CACGTG	1 cut(s)	3569
AcyI	GRCGYC	1 cut(s)	3671
AfaI	GTAC	8 cut(s)	26, 147, 879, 1091, 2122, 3335, 3410, 3984
AfeI	AGCGCT	2 cut(s)	1130, 1283
AfiI	CCNNNNNNNGG	4 cut(s)	2045, 2198, 3084, 3643
AflII	CTTAAG	1 cut(s)	1558
AflIII	ACRYGT	2 cut(s)	270, 3568
AgeI	ACCGGT	1 cut(s)	2728
AjnI	CCWGG	5 cut(s)	606, 1016, 1095, 1152, 3736
AjuI	GAANNNNNNNTTGG	2 cut(s)	2670, 2702
Alw21I	GWGCWC	3 cut(s)	585, 749, 3201
Alw26I	GTCTC	8 cut(s)	9, 953, 2008, 2159, 2763, 2767, 2933, 3525
AlwI	GGATC	2 cut(s)	2573, 3358
AlwNI	CAGNNNCTG	2 cut(s)	2510, 2882
Ama87I	CYCGRG	1 cut(s)	2961
Aor51HI	AGCGCT	2 cut(s)	1130, 1283
AoxI	GGCC	6 cut(s)	92, 128, 712, 2060, 2690, 3086
ApaI	GGGCCC	1 cut(s)	2694
ApeKI	GCWGC	5 cut(s)	988, 1137, 1797, 1874, 2188
AsiGI	ACCGGT	1 cut(s)	2728
Asp700I	GAANNNNTTC	3 cut(s)	323, 518, 3096
AspLEI	GCGC	7 cut(s)	114, 164, 1131, 1284, 2111, 3331, 3783
AspS9I	GGNCC	3 cut(s)	128, 2690, 2691
AsuC2I	CCSGG	2 cut(s)	2157, 3625
AsuII	TTCGAA	1 cut(s)	480
AvaI	CYCGRG	1 cut(s)	2961
AxyI	CCTNAGG	2 cut(s)	2793, 3666
BaeGI	GKGCMC	2 cut(s)	2694, 3057
BaeI	ACNNNNGTAYC	2 cut(s)	3974, 4007
BalI	TGGCCA	1 cut(s)	3088
BanI	GGYRCC	3 cut(s)	212, 3054, 3136
BanII	GRGCYC	2 cut(s)	749, 2694
BarI	GAAGNNNNNNTAC	2 cut(s)	1073, 1105
BauI	CACGAG	2 cut(s)	3165, 3581
BbrPI	CACGTG	1 cut(s)	3569
BbsI	GAAGAC	1 cut(s)	1542
Bbv12I	GWGCWC	3 cut(s)	585, 749, 3201
BbvI	GCAGC	5 cut(s)	1000, 1149, 1809, 1861, 2200
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	5 cut(s)	608, 1018, 1097, 1154, 3738
BciVI	GTATCC	3 cut(s)	1254, 2260, 2390
BclI	TGATCA	3 cut(s)	820, 1750, 3970
BcnI	CCSGG	2 cut(s)	2157, 3625
BcoDI	GTCTC	8 cut(s)	9, 953, 2008, 2159, 2763, 2767, 2933, 3525
BfaI	CTAG	4 cut(s)	851, 1430, 2100, 2244
BfmI	CTRYAG	4 cut(s)	1893, 2311, 3202, 3767
BfoI	RGCGCY	3 cut(s)	1132, 1285, 2112
BfrI	CTTAAG	1 cut(s)	1558
BfuAI	ACCTGC	2 cut(s)	2629, 3306
BfuI	GTATCC	3 cut(s)	1254, 2260, 2390
BglII	AGATCT	3 cut(s)	1249, 3304, 3885
BisI	GCNGC	6 cut(s)	715, 989, 1138, 1798, 1875, 2189
BlpI	GCTNAGC	1 cut(s)	1979
BlsI	GCNGC	6 cut(s)	716, 990, 1139, 1799, 1876, 2190
BmcAI	AGTACT	1 cut(s)	879
Bme1390I	CCNGG	7 cut(s)	608, 1018, 1097, 1154, 2157, 3625, 3738
BmeT110I	CYCGRG	1 cut(s)	2961
BmgT120I	GGNCC	3 cut(s)	128, 2690, 2691
BmrFI	CCNGG	7 cut(s)	608, 1018, 1097, 1154, 2157, 3625, 3738
BmsI	GCATC	9 cut(s)	229, 2135, 2287, 2456, 2848, 2863, 2869, 2914, 2977
BoxI	GACNNNNGTC	2 cut(s)	353, 1590
BpiI	GAAGAC	1 cut(s)	1542
BplI	GAGNNNNNCTC	6 cut(s)	731, 763, 1312, 1344, 1967, 1999
BpmI	CTGGAG	3 cut(s)	1928, 2787, 3285
Bpu10I	CCTNAGC	2 cut(s)	846, 2272
Bpu1102I	GCTNAGC	1 cut(s)	1979
Bpu14I	TTCGAA	1 cut(s)	480
BpuEI	CTTGAG	4 cut(s)	329, 467, 1813, 2509
BpuMI	CCSGG	2 cut(s)	2157, 3625
BsaAI	YACGTR	1 cut(s)	3569
BsaHI	GRCGYC	1 cut(s)	3671
BsaJI	CCNNGG	7 cut(s)	1588, 2172, 2476, 2803, 3285, 3807, 3825
BsaWI	WCCGGW	1 cut(s)	2728
Bsc4I	CCNNNNNNNGG	4 cut(s)	2045, 2198, 3084, 3643
Bse118I	RCCGGY	2 cut(s)	94, 2728
Bse1I	ACTGG	1 cut(s)	1640
Bse21I	CCTNAGG	2 cut(s)	2793, 3666
Bse3DI	GCAATG	5 cut(s)	357, 724, 1192, 2140, 3089
BseBI	CCWGG	5 cut(s)	608, 1018, 1097, 1154, 3738
BseDI	CCNNGG	7 cut(s)	1588, 2172, 2476, 2803, 3285, 3807, 3825
BseLI	CCNNNNNNNGG	4 cut(s)	2045, 2198, 3084, 3643
BseMI	GCAATG	5 cut(s)	357, 724, 1192, 2140, 3089
BseNI	ACTGG	1 cut(s)	1640
BseRI	GAGGAG	6 cut(s)	168, 171, 2478, 2993, 2996, 3599
BseSI	GKGCMC	2 cut(s)	2694, 3057
BseX3I	CGGCCG	1 cut(s)	92
BseXI	GCAGC	5 cut(s)	1000, 1149, 1809, 1861, 2200
BseYI	CCCAGC	2 cut(s)	2774, 2861
BsgI	GTGCAG	4 cut(s)	1156, 2801, 3600, 3695
Bsh1236I	CGCG	4 cut(s)	112, 114, 164, 1354
Bsh1285I	CGRYCG	2 cut(s)	95, 2733
BshFI	GGCC	6 cut(s)	94, 130, 714, 2062, 2692, 3088
BshNI	GGYRCC	3 cut(s)	212, 3054, 3136
BshTI	ACCGGT	1 cut(s)	2728
BsiEI	CGRYCG	2 cut(s)	95, 2733
BsiHKAI	GWGCWC	3 cut(s)	585, 749, 3201
BsiHKCI	CYCGRG	1 cut(s)	2961
BsiSI	CCGG	4 cut(s)	95, 2157, 2729, 3625
BslFI	GGGAC	1 cut(s)	2139
BslI	CCNNNNNNNGG	4 cut(s)	2045, 2198, 3084, 3643
BsmAI	GTCTC	8 cut(s)	9, 953, 2008, 2159, 2763, 2767, 2933, 3525
BsmBI	CGTCTC	2 cut(s)	9, 2763
BsmFI	GGGAC	1 cut(s)	2139
BsmI	GAATGC	4 cut(s)	1048, 1100, 1932, 2049
BsnI	GGCC	6 cut(s)	94, 130, 714, 2062, 2692, 3088
BsoBI	CYCGRG	1 cut(s)	2961
Bsp119I	TTCGAA	1 cut(s)	480
Bsp120I	GGGCCC	1 cut(s)	2690
Bsp1286I	GDGCHC	5 cut(s)	585, 749, 2694, 3057, 3201
Bsp1407I	TGTACA	1 cut(s)	3333
Bsp1720I	GCTNAGC	1 cut(s)	1979
Bsp19I	CCATGG	5 cut(s)	1588, 2172, 2476, 2803, 3825
Bsp68I	TCGCGA	1 cut(s)	1354
BspANI	GGCC	6 cut(s)	94, 130, 714, 2062, 2692, 3088
BspFNI	CGCG	4 cut(s)	112, 114, 164, 1354
BspHI	TCATGA	4 cut(s)	315, 823, 1936, 2674
BspMAI	CTGCAG	2 cut(s)	2315, 3771
BspMI	ACCTGC	2 cut(s)	2629, 3306
BspPI	GGATC	2 cut(s)	2573, 3358
BspQI	GCTCTTC	1 cut(s)	2961
BspT104I	TTCGAA	1 cut(s)	480
BspT107I	GGYRCC	3 cut(s)	212, 3054, 3136
BspTI	CTTAAG	1 cut(s)	1558
BsrBI	CCGCTC	2 cut(s)	742, 1694
BsrDI	GCAATG	5 cut(s)	357, 724, 1192, 2140, 3089
BsrFI	RCCGGY	2 cut(s)	94, 2728
BsrGI	TGTACA	1 cut(s)	3333
BsrI	ACTGG	1 cut(s)	1640
BssAI	RCCGGY	2 cut(s)	94, 2728
BssECI	CCNNGG	7 cut(s)	1588, 2172, 2476, 2803, 3285, 3807, 3825
BssNAI	GTATAC	1 cut(s)	541
BssNI	GRCGYC	1 cut(s)	3671
BssSI	CACGAG	2 cut(s)	3165, 3581
BssT1I	CCWWGG	6 cut(s)	1588, 2172, 2476, 2803, 3285, 3825
Bst1107I	GTATAC	1 cut(s)	541
Bst2BI	CACGAG	2 cut(s)	3165, 3581
Bst2UI	CCWGG	5 cut(s)	608, 1018, 1097, 1154, 3738
Bst4CI	ACNGT	9 cut(s)	187, 202, 378, 472, 1482, 1998, 2669, 2897, 3466
Bst6I	CTCTTC	3 cut(s)	1076, 2673, 2961
BstACI	GRCGYC	1 cut(s)	3671
BstAFI	CTTAAG	1 cut(s)	1558
BstAPI	GCANNNNNTGC	3 cut(s)	2306, 2453, 2788
BstAUI	TGTACA	1 cut(s)	3333
BstBAI	YACGTR	1 cut(s)	3569
BstBI	TTCGAA	1 cut(s)	480
BstC8I	GCNNGC	5 cut(s)	1470, 1632, 2311, 2784, 3871
BstDSI	CCRYGG	5 cut(s)	1588, 2172, 2476, 2803, 3825
BstEII	GGTNACC	1 cut(s)	1583
BstFNI	CGCG	4 cut(s)	112, 114, 164, 1354
BstH2I	RGCGCY	3 cut(s)	1132, 1285, 2112
BstHHI	GCGC	7 cut(s)	114, 164, 1131, 1284, 2111, 3331, 3783
BstMAI	GTCTC	8 cut(s)	9, 953, 2008, 2159, 2763, 2767, 2933, 3525
BstMCI	CGRYCG	2 cut(s)	95, 2733
BstNI	CCWGG	5 cut(s)	608, 1018, 1097, 1154, 3738
BstNSI	RCATGY	2 cut(s)	274, 3131
BstPAI	GACNNNNGTC	2 cut(s)	353, 1590
BstPI	GGTNACC	1 cut(s)	1583
BstSCI	CCNGG	7 cut(s)	606, 1016, 1095, 1152, 2155, 3623, 3736
BstSFI	CTRYAG	4 cut(s)	1893, 2311, 3202, 3767
BstSLI	GKGCMC	2 cut(s)	2694, 3057
BstUI	CGCG	4 cut(s)	112, 114, 164, 1354
BstV1I	GCAGC	5 cut(s)	1000, 1149, 1809, 1861, 2200
BstV2I	GAAGAC	1 cut(s)	1542
BstX2I	RGATCY	4 cut(s)	1249, 3304, 3350, 3885
BstXI	CCANNNNNNTGG	1 cut(s)	3826
BstYI	RGATCY	4 cut(s)	1249, 3304, 3350, 3885
BstZ17I	GTATAC	1 cut(s)	541
BstZI	CGGCCG	1 cut(s)	92
Bsu36I	CCTNAGG	2 cut(s)	2793, 3666
BsuI	GTATCC	3 cut(s)	1254, 2260, 2390
BsuRI	GGCC	6 cut(s)	94, 130, 714, 2062, 2692, 3088
BtgI	CCRYGG	5 cut(s)	1588, 2172, 2476, 2803, 3825
BtgZI	GCGATG	1 cut(s)	2310
BtsI	GCAGTG	2 cut(s)	1634, 2941
BtsIMutI	CAGTG	4 cut(s)	1365, 1634, 2902, 2941
BtuMI	TCGCGA	1 cut(s)	1354
BveI	ACCTGC	2 cut(s)	2629, 3306
Cac8I	GCNNGC	5 cut(s)	1470, 1632, 2311, 2784, 3871
CaiI	CAGNNNCTG	2 cut(s)	2510, 2882
CciI	TCATGA	4 cut(s)	315, 823, 1936, 2674
CfoI	GCGC	7 cut(s)	114, 164, 1131, 1284, 2111, 3331, 3783
Cfr10I	RCCGGY	2 cut(s)	94, 2728
Cfr13I	GGNCC	3 cut(s)	128, 2690, 2691
CseI	GACGC	2 cut(s)	2780, 3660
Csp6I	GTAC	8 cut(s)	25, 146, 878, 1090, 2121, 3334, 3409, 3983
CspAI	ACCGGT	1 cut(s)	2728
CviQI	GTAC	8 cut(s)	25, 146, 878, 1090, 2121, 3334, 3409, 3983
DraI	TTTAAA	1 cut(s)	382
DrdI	GACNNNNNNGTC	1 cut(s)	2506
DseDI	GACNNNNNNGTC	1 cut(s)	2506
EaeI	YGGCCR	3 cut(s)	92, 712, 3086
EagI	CGGCCG	1 cut(s)	92
Eam1104I	CTCTTC	3 cut(s)	1076, 2673, 2961
EarI	CTCTTC	3 cut(s)	1076, 2673, 2961
Ecl136II	GAGCTC	1 cut(s)	747
EclXI	CGGCCG	1 cut(s)	92
Eco130I	CCWWGG	6 cut(s)	1588, 2172, 2476, 2803, 3285, 3825
Eco24I	GRGCYC	2 cut(s)	749, 2694
Eco47III	AGCGCT	2 cut(s)	1130, 1283
Eco52I	CGGCCG	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	747
Eco57I	CTGAAG	2 cut(s)	902, 3057
Eco72I	CACGTG	1 cut(s)	3569
Eco81I	CCTNAGG	2 cut(s)	2793, 3666
Eco88I	CYCGRG	1 cut(s)	2961
Eco91I	GGTNACC	1 cut(s)	1583
EcoICRI	GAGCTC	1 cut(s)	747
EcoO109I	RGGNCCY	1 cut(s)	2691
EcoO65I	GGTNACC	1 cut(s)	1583
EcoRI	GAATTC	2 cut(s)	930, 3605
EcoRII	CCWGG	5 cut(s)	606, 1016, 1095, 1152, 3736
EcoT14I	CCWWGG	6 cut(s)	1588, 2172, 2476, 2803, 3285, 3825
EcoT22I	ATGCAT	3 cut(s)	724, 2397, 2449
EcoT38I	GRGCYC	2 cut(s)	749, 2694
ErhI	CCWWGG	6 cut(s)	1588, 2172, 2476, 2803, 3285, 3825
Esp3I	CGTCTC	2 cut(s)	9, 2763
FalI	AAGNNNNNCTT	6 cut(s)	536, 568, 1115, 1147, 1444, 1476
FaqI	GGGAC	1 cut(s)	2139
FauI	CCCGC	1 cut(s)	789
FbaI	TGATCA	3 cut(s)	820, 1750, 3970
FblI	GTMKAC	1 cut(s)	540
Fnu4HI	GCNGC	6 cut(s)	715, 989, 1138, 1798, 1875, 2189
FriOI	GRGCYC	2 cut(s)	749, 2694
Fsp4HI	GCNGC	6 cut(s)	715, 989, 1138, 1798, 1875, 2189
FspBI	CTAG	4 cut(s)	851, 1430, 2100, 2244
GlaI	GCGC	7 cut(s)	113, 163, 1130, 1283, 2110, 3330, 3782
GluI	GCNGC	6 cut(s)	715, 989, 1138, 1798, 1875, 2189
GsaI	CCCAGC	2 cut(s)	2778, 2865
GsuI	CTGGAG	3 cut(s)	1928, 2787, 3285
HaeII	RGCGCY	3 cut(s)	1132, 1285, 2112
HaeIII	GGCC	6 cut(s)	94, 130, 714, 2062, 2692, 3088
HapII	CCGG	4 cut(s)	95, 2157, 2729, 3625
HgaI	GACGC	2 cut(s)	2780, 3660
HhaI	GCGC	7 cut(s)	114, 164, 1131, 1284, 2111, 3331, 3783
Hin1I	GRCGYC	1 cut(s)	3671
Hin6I	GCGC	7 cut(s)	112, 162, 1129, 1282, 2109, 3329, 3781
HinP1I	GCGC	7 cut(s)	112, 162, 1129, 1282, 2109, 3329, 3781
HincII	GTYRAC	2 cut(s)	2665, 3148
HindII	GTYRAC	2 cut(s)	2665, 3148
HindIII	AAGCTT	2 cut(s)	1759, 3491
HpaI	GTTAAC	1 cut(s)	2665
HpaII	CCGG	4 cut(s)	95, 2157, 2729, 3625
Hpy188I	TCNGA	8 cut(s)	222, 1332, 2074, 2599, 2911, 3525, 3949, 3975
Hpy99I	CGWCG	2 cut(s)	235, 3676
HpyCH4III	ACNGT	9 cut(s)	187, 202, 378, 472, 1482, 1998, 2669, 2897, 3466
HpyCH4IV	ACGT	9 cut(s)	517, 677, 790, 1573, 2835, 3003, 3094, 3422, 3568
HpySE526I	ACGT	9 cut(s)	517, 677, 790, 1573, 2835, 3003, 3094, 3422, 3568
Hsp92I	GRCGYC	1 cut(s)	3671
HspAI	GCGC	7 cut(s)	112, 162, 1129, 1282, 2109, 3329, 3781
Ksp22I	TGATCA	3 cut(s)	820, 1750, 3970
KspAI	GTTAAC	1 cut(s)	2665
LguI	GCTCTTC	1 cut(s)	2961
Lsp1109I	GCAGC	5 cut(s)	1000, 1149, 1809, 1861, 2200
LweI	GCATC	9 cut(s)	229, 2135, 2287, 2456, 2848, 2863, 2869, 2914, 2977
MaeI	CTAG	4 cut(s)	851, 1430, 2100, 2244
MaeII	ACGT	9 cut(s)	517, 677, 790, 1573, 2835, 3003, 3094, 3422, 3568
MaeIII	GTNAC	7 cut(s)	116, 935, 1222, 1583, 1970, 2497, 3726
MbiI	CCGCTC	2 cut(s)	742, 1694
MfeI	CAATTG	1 cut(s)	83
MflI	RGATCY	4 cut(s)	1249, 3304, 3350, 3885
MhlI	GDGCHC	5 cut(s)	585, 749, 2694, 3057, 3201
MlsI	TGGCCA	1 cut(s)	3088
MluNI	TGGCCA	1 cut(s)	3088
MlyI	GAGTC	6 cut(s)	113, 1454, 2531, 2690, 3155, 3959
MmeI	TCCRAC	8 cut(s)	169, 184, 1422, 1649, 2440, 3043, 3405, 3834
Mox20I	TGGCCA	1 cut(s)	3088
Mph1103I	ATGCAT	3 cut(s)	724, 2397, 2449
MroXI	GAANNNNTTC	3 cut(s)	323, 518, 3096
MscI	TGGCCA	1 cut(s)	3088
Msp20I	TGGCCA	1 cut(s)	3088
MspA1I	CMGCKG	3 cut(s)	2945, 3640, 3988
MspCI	CTTAAG	1 cut(s)	1558
MspI	CCGG	4 cut(s)	95, 2157, 2729, 3625
MspR9I	CCNGG	7 cut(s)	608, 1018, 1097, 1154, 2157, 3625, 3738
MunI	CAATTG	1 cut(s)	83
Mva1269I	GAATGC	4 cut(s)	1048, 1100, 1932, 2049
MvaI	CCWGG	5 cut(s)	608, 1018, 1097, 1154, 3738
MvnI	CGCG	4 cut(s)	112, 114, 164, 1354
NciI	CCSGG	2 cut(s)	2157, 3625
NcoI	CCATGG	5 cut(s)	1588, 2172, 2476, 2803, 3825
NmeAIII	GCCGAG	3 cut(s)	2038, 3410, 3788
NmuCI	GTSAC	7 cut(s)	116, 935, 1222, 1583, 1970, 2497, 3726
NruI	TCGCGA	1 cut(s)	1354
NsiI	ATGCAT	3 cut(s)	724, 2397, 2449
NspI	RCATGY	2 cut(s)	274, 3131
NspV	TTCGAA	1 cut(s)	480
PagI	TCATGA	4 cut(s)	315, 823, 1936, 2674
PciI	ACATGT	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	2961
PctI	GAATGC	4 cut(s)	1048, 1100, 1932, 2049
PdmI	GAANNNNTTC	3 cut(s)	323, 518, 3096
PfeI	GAWTC	5 cut(s)	1781, 2321, 2484, 3545, 3803
PflMI	CCANNNNNTGG	1 cut(s)	3643
PinAI	ACCGGT	1 cut(s)	2728
PkrI	GCNGC	6 cut(s)	716, 990, 1139, 1799, 1876, 2190
PleI	GAGTC	6 cut(s)	113, 1453, 2531, 2689, 3155, 3958
PmaCI	CACGTG	1 cut(s)	3569
PmlI	CACGTG	1 cut(s)	3569
PpsI	GAGTC	6 cut(s)	113, 1453, 2531, 2689, 3155, 3958
Ppu21I	YACGTR	1 cut(s)	3569
PscI	ACATGT	1 cut(s)	270
PshAI	GACNNNNGTC	2 cut(s)	353, 1590
Psp124BI	GAGCTC	1 cut(s)	749
Psp1406I	AACGTT	4 cut(s)	517, 1573, 2835, 3094
Psp6I	CCWGG	5 cut(s)	606, 1016, 1095, 1152, 3736
PspCI	CACGTG	1 cut(s)	3569
PspEI	GGTNACC	1 cut(s)	1583
PspFI	CCCAGC	2 cut(s)	2774, 2861
PspGI	CCWGG	5 cut(s)	606, 1016, 1095, 1152, 3736
PspOMI	GGGCCC	1 cut(s)	2690
PspPI	GGNCC	3 cut(s)	128, 2690, 2691
PstI	CTGCAG	2 cut(s)	2315, 3771
PstNI	CAGNNNCTG	2 cut(s)	2510, 2882
PsuI	RGATCY	4 cut(s)	1249, 3304, 3350, 3885
PvuII	CAGCTG	2 cut(s)	2945, 3640
RruI	TCGCGA	1 cut(s)	1354
RsaI	GTAC	8 cut(s)	26, 147, 879, 1091, 2122, 3335, 3410, 3984
RsaNI	GTAC	8 cut(s)	25, 146, 878, 1090, 2121, 3334, 3409, 3983
SacI	GAGCTC	1 cut(s)	749
SapI	GCTCTTC	1 cut(s)	2961
SatI	GCNGC	6 cut(s)	715, 989, 1138, 1798, 1875, 2189
Sau96I	GGNCC	3 cut(s)	128, 2690, 2691
SbfI	CCTGCAGG	1 cut(s)	2315
ScaI	AGTACT	1 cut(s)	879
SchI	GAGTC	6 cut(s)	113, 1454, 2531, 2690, 3155, 3959
ScrFI	CCNGG	7 cut(s)	608, 1018, 1097, 1154, 2157, 3625, 3738
SdaI	CCTGCAGG	1 cut(s)	2315
SduI	GDGCHC	5 cut(s)	585, 749, 2694, 3057, 3201
SfaNI	GCATC	9 cut(s)	229, 2135, 2287, 2456, 2848, 2863, 2869, 2914, 2977
SfcI	CTRYAG	4 cut(s)	1893, 2311, 3202, 3767
SfuI	TTCGAA	1 cut(s)	480
SmlI	CTYRAG	5 cut(s)	308, 446, 1558, 1792, 2524
SmoI	CTYRAG	5 cut(s)	308, 446, 1558, 1792, 2524
Sse8387I	CCTGCAGG	1 cut(s)	2315
SspI	AATATT	3 cut(s)	1294, 1805, 1964
SspMI	CTAG	4 cut(s)	851, 1430, 2100, 2244
SstI	GAGCTC	1 cut(s)	749
StyD4I	CCNGG	7 cut(s)	606, 1016, 1095, 1152, 2155, 3623, 3736
StyI	CCWWGG	6 cut(s)	1588, 2172, 2476, 2803, 3285, 3825
TaaI	ACNGT	9 cut(s)	187, 202, 378, 472, 1482, 1998, 2669, 2897, 3466
TaiI	ACGT	9 cut(s)	520, 680, 793, 1576, 2838, 3006, 3097, 3425, 3571
TaqI	TCGA	6 cut(s)	480, 574, 1533, 1959, 2428, 3900
TatI	WGTACW	5 cut(s)	145, 877, 1089, 2120, 3333
TauI	GCSGC	1 cut(s)	717
TfiI	GAWTC	5 cut(s)	1781, 2321, 2484, 3545, 3803
TscAI	CASTG	4 cut(s)	1365, 1641, 2902, 2941
TseFI	GTSAC	7 cut(s)	116, 935, 1222, 1583, 1970, 2497, 3726
TseI	GCWGC	5 cut(s)	988, 1137, 1797, 1874, 2188
Tsp45I	GTSAC	7 cut(s)	116, 935, 1222, 1583, 1970, 2497, 3726
TspGWI	ACGGA	4 cut(s)	42, 1394, 3911, 3997
TspRI	CASTG	4 cut(s)	1365, 1641, 2902, 2941
Van91I	CCANNNNNTGG	1 cut(s)	3643
Vha464I	CTTAAG	1 cut(s)	1558
XceI	RCATGY	2 cut(s)	274, 3131
XcmI	CCANNNNNNNNNTGG	2 cut(s)	400, 3640
XmiI	GTMKAC	1 cut(s)	540
XmnI	GAANNNNTTC	3 cut(s)	323, 518, 3096
XspI	CTAG	4 cut(s)	851, 1430, 2100, 2244
ZrmI	AGTACT	1 cut(s)	879
Zsp2I	ATGCAT	3 cut(s)	724, 2397, 2449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.