Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Reverse (-)

67326770 .. 67327108

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0544200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGAGACCTCACCTCCAAAGGATTTCATTAAACTGAATTTTGATGGTTCCCTCTATGATAATAACCAAGGAGCAGCTGGATTTGTTACAAGAGATGATCAGGGATTACCTATTCTTGCTTCTACAAATAAAATAGGATACTCTAACGTTTTAATCACCGAAATTCTAGCCCTAAGAGCTGGCCTCCAAGCTTCTCTTATTCATGGTTACTCAAAAATCAAAGTGGAAGGAGATTCAAAGGTCTTAATTGACAGCATCAACAATGTTTCTGCAACACTGGCGCATCAAGCTTCTTGTTTAGGATATCAAATGTGTGGCAAGTCAATTCCAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

112

Amino Acids

12.06

Weight (kDa)

6.7

Isoelectric Point (pI)

26.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	13 - 93	3.6e-14	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	37, 162
AgsI	TTSAA	1 cut(s)	237
AluBI	AGCT	4 cut(s)	77, 179, 191, 290
AluI	AGCT	4 cut(s)	77, 179, 191, 290
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	2 cut(s)	37, 162
AspLEI	GCGC	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	3, 148
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	38
BciVI	GTATCC	1 cut(s)	131
BclI	TGATCA	1 cut(s)	97
BfaI	CTAG	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	2 cut(s)	264, 292
BplI	GAGNNNNNCTC	2 cut(s)	168, 200
BsaJI	CCNNGG	1 cut(s)	67
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	86
BshFI	GGCC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	97
BspANI	GGCC	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 278, 287
BstV1I	GCAGC	1 cut(s)	86
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	181
CfoI	GCGC	1 cut(s)	283
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	6 cut(s)	77, 170, 179, 183, 191, 290
CviKI_1	RGCY	6 cut(s)	77, 170, 179, 183, 191, 290
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	305
EcoRV	GATATC	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	1 cut(s)	206
FaiI	YATR	2 cut(s)	57, 204
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	183
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HindIII	AAGCTT	2 cut(s)	189, 288
HinfI	GANTC	1 cut(s)	233
HphI	GGTGA	2 cut(s)	3, 148
HpyAV	CCTTC	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 278, 287
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	1 cut(s)	281
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	4 cut(s)	63, 86, 165, 263
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	2 cut(s)	264, 292
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	85, 206
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MluCI	AATT	4 cut(s)	37, 162, 246, 324
MnlI	CCTC	4 cut(s)	19, 24, 62, 194
MseI	TTAA	3 cut(s)	30, 152, 245
MspA1I	CMGCKG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	176, 278, 287
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	76
Psp1406I	AACGTT	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	30, 152, 245
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	97
SetI	ASST	9 cut(s)	11, 16, 79, 112, 150, 181, 193, 243, 292
SfaNI	GCATC	2 cut(s)	264, 292
Sse9I	AATT	4 cut(s)	37, 162, 246, 324
SspMI	CTAG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	67
TaiI	ACGT	1 cut(s)	150
TasI	AATT	4 cut(s)	37, 162, 246, 324
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	3 cut(s)	30, 152, 245
Tru9I	TTAA	3 cut(s)	30, 152, 245
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	16, 191
TspRI	CASTG	1 cut(s)	282
XapI	RAATTY	2 cut(s)	37, 162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.