Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008174

Physical Location & Seq

Genomic Coordinates Forward (+)

47021400 .. 47032505

Gene Structure 11106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50235

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGAGAGAATTTAAGAATGGATGTGACACTGAATTCCATTCCATGGAAACACTCTGGGGATGACTCTAGATGGCTGGTAAACATCAAACAGGTAACTTATTTCAGGAAGGTTTGGGAGGTTTGTGACCATGAGCTCTCATGCAAGGAAGTTCAACATCAGATATTTTCTTCGGTTGTACCTAGGAATGTTATAATCTACTTAAGGCGACCAGTTGGTAGTGAAATTGATGGTAAAATCATTCATCATGTGGATATTGCTTCTGGCTTGTACCCTATACTGTTCTGTTATCCATTCTCGCTAGAAAGGATTAATCATGTTCATCAGACACCTGACAGGGAGTGGTTTAAAACTGAGGCCGTTCTTCGTTTTAGCTTGGGAAACTTTCTGTTCTTCACCATCCTGTCAGTTGTGATGATTGGTGTGATGAGTCAAAAGGATCCCCGTGATAGTATCCACTATCCACCATGGTGGATGGATGATGAAAGCTACTTACTGGTTCCTTTTGGTGATCTTCTCATTGTGTTTCATACCAAACGGGATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015194 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015825 GO:0015849 GO:0022857 GO:0022889 GO:0032329 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Serinc

Protein Analysis

182

Amino Acids

21.61

Weight (kDa)

6.49

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serinc	PF03348	109 - 159	1.2e-08	Serine incorporator (Serinc)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008174)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130961 RchiOBHm_Chr2g0131531 RchiOBHm_Chr2g0131581 RchiOBHm_Chr2g0131861
rosa_laevigata	RLG00000019215 RLG00000019216 RLG00000019217
rosa_multiflora	Rmu_sc0001159.1_g000032
rosa_roxburghii	Rroxscaffold_2G00112510 Rroxscaffold_2G00112560 Rroxscaffold_2G00112570 Rroxscaffold_2G00112790 Rroxscaffold_2G00113420
rosa_rugosa	Rorug02G0291900 Rorug02G0294200 Rorug02G0294300 Rorug02G0300500
rosa_samantha	Rh2BG353800 Rh2BG359700 Rh2BG469300 Rh2DG376800 Rh5CG304700
rosa_wichuraiana	Rw2G028640 Rw2G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AccB7I	CCANNNNNTGG	1 cut(s)	45
AclWI	GGATC	2 cut(s)	434, 447
AcsI	RAATTY	2 cut(s)	10, 34
AfaI	GTAC	2 cut(s)	180, 272
AfiI	CCNNNNNNNGG	1 cut(s)	45
AflII	CTTAAG	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	155
AleI	CACNNNNGTG	1 cut(s)	469
AluBI	AGCT	3 cut(s)	136, 375, 489
AluI	AGCT	3 cut(s)	136, 375, 489
Alw21I	GWGCWC	1 cut(s)	138
AlwI	GGATC	2 cut(s)	434, 447
AoxI	GGCC	1 cut(s)	357
ApoI	RAATTY	2 cut(s)	10, 34
AseI	ATTAAT	1 cut(s)	312
AspA2I	CCTAGG	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	388, 521
AvrII	CCTAGG	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	138
BccI	CCATC	4 cut(s)	66, 224, 407, 469
BceAI	ACGGC	1 cut(s)	344
BciVI	GTATCC	1 cut(s)	464
BfaI	CTAG	3 cut(s)	69, 183, 302
BfrI	CTTAAG	1 cut(s)	202
BfuI	GTATCC	1 cut(s)	464
BlnI	CCTAGG	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	441, 501
BsaJI	CCNNGG	3 cut(s)	44, 182, 467
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	212, 501
BseDI	CCNNGG	3 cut(s)	44, 182, 467
BseGI	GGATG	5 cut(s)	28, 67, 399, 480, 484
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	2 cut(s)	212, 501
BshFI	GGCC	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	45
BsnI	GGCC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	439, 511
Bsp19I	CCATGG	2 cut(s)	44, 467
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	441, 501
BspPI	GGATC	2 cut(s)	434, 447
BspTI	CTTAAG	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	212, 501
BssECI	CCNNGG	3 cut(s)	44, 182, 467
BssMI	GATC	2 cut(s)	439, 511
BssT1I	CCWWGG	3 cut(s)	44, 182, 467
Bst4CI	ACNGT	1 cut(s)	282
BstAFI	CTTAAG	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	354
BstDSI	CCRYGG	2 cut(s)	44, 467
BstF5I	GGATG	5 cut(s)	28, 67, 399, 480, 484
BstKTI	GATC	2 cut(s)	442, 514
BstMBI	GATC	2 cut(s)	439, 511
BstX2I	RGATCY	1 cut(s)	439
BstXI	CCANNNNNNTGG	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	439
BsuI	GTATCC	1 cut(s)	464
BsuRI	GGCC	1 cut(s)	359
BtgI	CCRYGG	2 cut(s)	44, 467
BtsCI	GGATG	5 cut(s)	28, 67, 399, 480, 484
BtsIMutI	CAGTG	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	179, 271
CviAII	CATG	6 cut(s)	45, 131, 141, 248, 317, 468
CviJI	RGCY	6 cut(s)	76, 136, 267, 359, 375, 489
CviKI_1	RGCY	6 cut(s)	76, 136, 267, 359, 375, 489
CviQI	GTAC	2 cut(s)	179, 271
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	2 cut(s)	441, 513
DpnII	GATC	2 cut(s)	439, 511
DraI	TTTAAA	1 cut(s)	349
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	3 cut(s)	44, 182, 467
Eco24I	GRGCYC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	34
EcoT14I	CCWWGG	3 cut(s)	44, 182, 467
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	3 cut(s)	44, 182, 467
FaeI	CATG	6 cut(s)	48, 134, 144, 251, 320, 471
FaiI	YATR	9 cut(s)	46, 132, 142, 194, 249, 278, 318, 469, 531
FatI	CATG	6 cut(s)	44, 130, 140, 247, 316, 467
FokI	GGATG	5 cut(s)	35, 74, 386, 487, 491
FriOI	GRGCYC	1 cut(s)	138
FspBI	CTAG	3 cut(s)	69, 183, 302
HaeIII	GGCC	1 cut(s)	359
Hin1II	CATG	6 cut(s)	48, 134, 144, 251, 320, 471
HinfI	GANTC	2 cut(s)	65, 430
HphI	GGTGA	2 cut(s)	388, 521
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	162, 327
Hpy188III	TCNNGA	2 cut(s)	69, 106
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	282
HpyCH4V	TGCA	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	354
Hsp92II	CATG	6 cut(s)	48, 134, 144, 251, 320, 471
Kzo9I	GATC	2 cut(s)	439, 511
MaeI	CTAG	3 cut(s)	69, 183, 302
MaeIII	GTNAC	3 cut(s)	25, 94, 125
MalI	GATC	2 cut(s)	441, 513
MboI	GATC	2 cut(s)	439, 511
MboII	GAAGA	4 cut(s)	162, 356, 385, 506
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	3 cut(s)	10, 34, 225
MlyI	GAGTC	2 cut(s)	59, 439
MnlI	CCTC	2 cut(s)	112, 349
MseI	TTAA	4 cut(s)	14, 203, 312, 348
MslI	CAYNNNNRTG	1 cut(s)	469
MspCI	CTTAAG	1 cut(s)	202
NcoI	CCATGG	2 cut(s)	44, 467
NdeII	GATC	2 cut(s)	439, 511
NlaIII	CATG	6 cut(s)	48, 134, 144, 251, 320, 471
NlaIV	GGNNCC	2 cut(s)	441, 501
NmuCI	GTSAC	2 cut(s)	25, 125
OliI	CACNNNNGTG	1 cut(s)	469
PflMI	CCANNNNNTGG	1 cut(s)	45
PleI	GAGTC	2 cut(s)	59, 438
PpsI	GAGTC	2 cut(s)	59, 438
PshBI	ATTAAT	1 cut(s)	312
PsiI	TTATAA	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	441, 501
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	2 cut(s)	180, 272
RsaNI	GTAC	2 cut(s)	179, 271
RseI	CAYNNNNRTG	1 cut(s)	469
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	4 cut(s)	14, 203, 312, 348
Sau3AI	GATC	2 cut(s)	439, 511
SchI	GAGTC	2 cut(s)	59, 439
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	8 cut(s)	96, 114, 123, 138, 184, 334, 377, 491
SmiMI	CAYNNNNRTG	1 cut(s)	469
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	3 cut(s)	10, 34, 225
SspMI	CTAG	3 cut(s)	69, 183, 302
SstI	GAGCTC	1 cut(s)	138
StyI	CCWWGG	3 cut(s)	44, 182, 467
TaaI	ACNGT	1 cut(s)	282
TasI	AATT	3 cut(s)	10, 34, 225
Tru1I	TTAA	4 cut(s)	14, 203, 312, 348
Tru9I	TTAA	4 cut(s)	14, 203, 312, 348
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	2 cut(s)	25, 125
Tsp45I	GTSAC	2 cut(s)	25, 125
TspDTI	ATGAA	4 cut(s)	233, 311, 498, 518
TspRI	CASTG	1 cut(s)	36
Van91I	CCANNNNNTGG	1 cut(s)	45
Vha464I	CTTAAG	1 cut(s)	202
VspI	ATTAAT	1 cut(s)	312
XapI	RAATTY	2 cut(s)	10, 34
XbaI	TCTAGA	1 cut(s)	68
XmaJI	CCTAGG	1 cut(s)	182
XspI	CTAG	3 cut(s)	69, 183, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.