Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008174

Physical Location & Seq

Genomic Coordinates Reverse (-)

45945563 .. 45963208

Gene Structure 17646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGATGATAGCTAACCGTCTCGGACTGTTGGGAGGCGGTGCCGACACAGGCACTTTACCATCGATGGGATTGATCCTCTTGTCAGGCTGCATCCAACCTTGGCTGAAATTGGAGAGGCTACCAAAGCTAATGGTGGTCCAATATAGTGTATGGATGCACTCATCTTGGGTGTTACGATCAGTTTCAAAGGTCGTGCCTTTAGGCCGTTTTTGGGCGATGGCTTTGATAACGGGGGTAGCGAGACTGTCTGCGTCTTGGTCAACATGGATCAAACGGTGGGCAGCGCCGCTATCCTTGGTAACGCACTCTATGTCAGAGGATTATCGAGCAATGATAATGCACCCTCTTACCAAAACTAGAGAATTTAAGAGTGGGTGTGACCCTGAATTCCATTCCATGGAAACACTGGGGATGATTCTAAATGGCAACATTGAACAGATGGACAGAAAAATTGCAGTGCCAGCACTTGCTGTTGAACCAATTGAGTGCAAATGTAGTGGTCCTCACGGACACTTGAAAGATGTTCTTTCGATGGTGTTCACAGCACCTACAACAATTTTTGGTTTTCCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.19

Weight (kDa)

9.21

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008174)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130961 RchiOBHm_Chr2g0131531 RchiOBHm_Chr2g0131581 RchiOBHm_Chr2g0131861
rosa_laevigata	RLG00000019215 RLG00000019216 RLG00000019217
rosa_multiflora	Rmu_sc0001159.1_g000032
rosa_roxburghii	Rroxscaffold_2G00112510 Rroxscaffold_2G00112560 Rroxscaffold_2G00112570 Rroxscaffold_2G00112790 Rroxscaffold_2G00113420
rosa_rugosa	Rorug02G0291900 Rorug02G0294200 Rorug02G0294300 Rorug02G0300500
rosa_samantha	Rh2BG353800 Rh2BG359700 Rh2BG469300 Rh2DG376800 Rh5CG304700
rosa_wichuraiana	Rw2G028640 Rw2G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	397
AciI	CCGC	2 cut(s)	36, 287
AclWI	GGATC	2 cut(s)	67, 275
AcsI	RAATTY	2 cut(s)	362, 386
AfiI	CCNNNNNNNGG	3 cut(s)	65, 211, 397
AgsI	TTSAA	4 cut(s)	186, 434, 476, 517
AluBI	AGCT	2 cut(s)	11, 127
AluI	AGCT	2 cut(s)	11, 127
Alw26I	GTCTC	2 cut(s)	23, 235
AlwI	GGATC	2 cut(s)	67, 275
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	87, 281
ApoI	RAATTY	2 cut(s)	362, 386
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	136, 500
AvaII	GGWCC	2 cut(s)	136, 500
BanI	GGYRCC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	74, 293
BccI	CCATC	5 cut(s)	58, 67, 211, 433, 526
BceAI	ACGGC	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	23, 235
BfaI	CTAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	287
BisI	GCNGC	3 cut(s)	88, 282, 287
BlsI	GCNGC	3 cut(s)	89, 283, 288
Bme18I	GGWCC	2 cut(s)	136, 500
BmgT120I	GGNCC	2 cut(s)	136, 500
BmiI	GGNNCC	1 cut(s)	40
BmrI	ACTGGG	1 cut(s)	416
BmsI	GCATC	2 cut(s)	99, 144
BmuI	ACTGGG	1 cut(s)	416
Bsa29I	ATCGAT	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	98, 294, 396
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 211, 397
Bse1I	ACTGG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	336
BseCI	ATCGAT	1 cut(s)	62
BseDI	CCNNGG	3 cut(s)	98, 294, 396
BseGI	GGATG	3 cut(s)	90, 159, 417
BseLI	CCNNNNNNNGG	3 cut(s)	65, 211, 397
BseMI	GCAATG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	411
BseXI	GCAGC	2 cut(s)	74, 293
BshFI	GGCC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	38
BshVI	ATCGAT	1 cut(s)	62
BslI	CCNNNNNNNGG	3 cut(s)	65, 211, 397
BsmAI	GTCTC	2 cut(s)	23, 235
BsmBI	CGTCTC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	72, 176, 267
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	2 cut(s)	36, 287
BspANI	GGCC	1 cut(s)	204
BspDI	ATCGAT	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	2 cut(s)	67, 275
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	411
BssECI	CCNNGG	3 cut(s)	98, 294, 396
BssMI	GATC	3 cut(s)	72, 176, 267
BssT1I	CCWWGG	3 cut(s)	98, 294, 396
Bst4CI	ACNGT	4 cut(s)	17, 27, 246, 276
BstC8I	GCNNGC	1 cut(s)	462
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	3 cut(s)	90, 159, 417
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	3 cut(s)	75, 179, 270
BstMAI	GTCTC	2 cut(s)	23, 235
BstMBI	GATC	3 cut(s)	72, 176, 267
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 461
BstV1I	GCAGC	2 cut(s)	74, 293
Bsu15I	ATCGAT	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	204
BsuTUI	ATCGAT	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	230
BtsCI	GGATG	3 cut(s)	90, 159, 417
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	404, 462
Cac8I	GCNNGC	1 cut(s)	462
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	2 cut(s)	136, 500
ClaI	ATCGAT	1 cut(s)	62
CseI	GACGC	1 cut(s)	240
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviAII	CATG	2 cut(s)	264, 397
CviJI	RGCY	7 cut(s)	11, 87, 103, 118, 127, 204, 221
CviKI_1	RGCY	7 cut(s)	11, 87, 103, 118, 127, 204, 221
DpnI	GATC	3 cut(s)	74, 178, 269
DpnII	GATC	3 cut(s)	72, 176, 267
Eco130I	CCWWGG	3 cut(s)	98, 294, 396
Eco47I	GGWCC	2 cut(s)	136, 500
EcoRI	GAATTC	1 cut(s)	386
EcoT14I	CCWWGG	3 cut(s)	98, 294, 396
ErhI	CCWWGG	3 cut(s)	98, 294, 396
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	2 cut(s)	267, 400
FaiI	YATR	5 cut(s)	144, 151, 265, 311, 398
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FatI	CATG	2 cut(s)	263, 396
Fnu4HI	GCNGC	3 cut(s)	88, 282, 287
FokI	GGATG	3 cut(s)	77, 166, 424
Fsp4HI	GCNGC	3 cut(s)	88, 282, 287
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	3 cut(s)	88, 282, 287
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	204
HgaI	GACGC	1 cut(s)	240
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	2 cut(s)	267, 400
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	1 cut(s)	415
Hpy166II	GTNNAC	2 cut(s)	261, 540
Hpy188I	TCNGA	2 cut(s)	23, 316
Hpy8I	GTNNAC	2 cut(s)	261, 540
HpyCH4III	ACNGT	4 cut(s)	17, 27, 246, 276
HpyCH4V	TGCA	5 cut(s)	90, 157, 340, 455, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 461
Hsp92II	CATG	2 cut(s)	267, 400
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	3 cut(s)	72, 176, 267
LpnPI	CCDG	5 cut(s)	33, 69, 392, 396, 474
Lsp1109I	GCAGC	2 cut(s)	74, 293
LweI	GCATC	2 cut(s)	99, 144
MaeI	CTAG	1 cut(s)	357
MaeIII	GTNAC	3 cut(s)	171, 298, 377
MalI	GATC	3 cut(s)	74, 178, 269
MboI	GATC	3 cut(s)	72, 176, 267
MfeI	CAATTG	1 cut(s)	480
MluCI	AATT	6 cut(s)	107, 362, 386, 450, 480, 555
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	6 cut(s)	26, 86, 108, 310, 354, 513
MseI	TTAA	1 cut(s)	366
MunI	CAATTG	1 cut(s)	480
MwoI	GCNNNNNNNGC	2 cut(s)	124, 461
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	3 cut(s)	72, 176, 267
NlaIII	CATG	2 cut(s)	267, 400
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	415
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	3 cut(s)	89, 283, 288
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	2 cut(s)	136, 500
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	3 cut(s)	88, 282, 287
Sau3AI	GATC	3 cut(s)	72, 176, 267
Sau96I	GGNCC	2 cut(s)	136, 500
SetI	ASST	5 cut(s)	13, 100, 129, 192, 550
SfaNI	GCATC	2 cut(s)	99, 144
SinI	GGWCC	2 cut(s)	136, 500
Sse9I	AATT	6 cut(s)	107, 362, 386, 450, 480, 555
SsiI	CCGC	2 cut(s)	36, 287
SspMI	CTAG	1 cut(s)	357
StyI	CCWWGG	3 cut(s)	98, 294, 396
TaaI	ACNGT	4 cut(s)	17, 27, 246, 276
TaqI	TCGA	3 cut(s)	62, 325, 530
TasI	AATT	6 cut(s)	107, 362, 386, 450, 480, 555
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	2 cut(s)	411, 462
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	2 cut(s)	87, 281
Tsp45I	GTSAC	1 cut(s)	377
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	2 cut(s)	411, 462
Van91I	CCANNNNNTGG	1 cut(s)	397
VpaK11BI	GGWCC	2 cut(s)	136, 500
XapI	RAATTY	2 cut(s)	362, 386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.