Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008174

Physical Location & Seq

Genomic Coordinates Reverse (-)

46103845 .. 46125110

Gene Structure 21266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGTTGCAACCACATGGCGATTTGGCGTCATTGATCATCTGCCACTCTCAAGCTACTTCTCCGTGTCCCAATTGAAAAGCCTCCAGTTCAGTCGGATGCCTATAATTAAAGTCTGGTTGCTTGTCAATGATATGCAGAAAACGATGTTGAATGGTCATGACAATTTTAGAAAAGGCTTCAGGCATCCCTATGTGTATAAAAGTGGGAGGAATGTTATAATCTACTTAAGGCGATCAGTGGGTAGTGAAATTAATAGTAACATCATTCATCATGTGGATATTGCTTCTGGCTTGTATGCTAGACTGTTCTGTCGACATCCCATCTTGCTAAAAAAGGTGCTGGAAACCCATAAATCAATTGCACAATACACAGAAGCGAAACTAAAAAGGGAAGCAAAGAAGATCAGAGCTTCATATTTGTCCACCTTTAGTTATATTGGGTTTAAAATGTCATTGGAATTTCAAGTTGATGGGTTAATATGTACTGTGCCTTTGGTGCTGGATTGGGGATTGGATATGCGTAAACAAATTGTTCTCGTTTATTTGAGCGATCTCCTGGAAGTGCAAAGTTGGCATCTCGTAAGAGTGTTGGGAATCCTGTTTCTCAGGATGGACATGATTGAGGTTATGCGAGTGAAGCTAACACACTTTTGGGATTCAAACCAGTGTGTTCCTTTTAAGATTGTTCAACAAACATTTAACCTGATCTACTATGAAGGAGATATAGAAGTCAGAGAAGATGGTTGTGGTGTATTTCAGATGGACAGAAAAATTGCAGTGCCAGCTCTTGCGGTTGAACCAATTGAGTGCACGTGCAGTCGTCCTCATGGACACTTGAAAGCTGTTCTTTCGATGGTCTTCACAGCACCTACAACAATTTTTGGTTTTCCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

34.48

Weight (kDa)

9.39

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008174)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130961 RchiOBHm_Chr2g0131531 RchiOBHm_Chr2g0131581 RchiOBHm_Chr2g0131861
rosa_laevigata	RLG00000019215 RLG00000019216 RLG00000019217
rosa_multiflora	Rmu_sc0001159.1_g000032
rosa_roxburghii	Rroxscaffold_2G00112510 Rroxscaffold_2G00112560 Rroxscaffold_2G00112570 Rroxscaffold_2G00112790 Rroxscaffold_2G00113420
rosa_rugosa	Rorug02G0291900 Rorug02G0294200 Rorug02G0294300 Rorug02G0300500
rosa_samantha	Rh2BG353800 Rh2BG359700 Rh2BG469300 Rh2DG376800 Rh5CG304700
rosa_wichuraiana	Rw2G028640 Rw2G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AasI	GACNNNNNNGTC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	313
AciI	CCGC	1 cut(s)	791
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	1 cut(s)	163
AcvI	CACGTG	1 cut(s)	813
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	484
AflII	CTTAAG	1 cut(s)	226
AgsI	TTSAA	7 cut(s)	76, 151, 464, 660, 689, 797, 838
AjnI	CCWGG	1 cut(s)	555
AluBI	AGCT	5 cut(s)	54, 410, 640, 785, 842
AluI	AGCT	5 cut(s)	54, 410, 640, 785, 842
Alw21I	GWGCWC	1 cut(s)	812
Alw44I	GTGCAC	1 cut(s)	808
ApaLI	GTGCAC	1 cut(s)	808
ApoI	RAATTY	1 cut(s)	458
AseI	ATTAAT	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	812
BbrPI	CACGTG	1 cut(s)	813
BbsI	GAAGAC	1 cut(s)	850
Bbv12I	GWGCWC	1 cut(s)	812
BccI	CCATC	6 cut(s)	329, 464, 604, 734, 754, 847
BciT130I	CCWGG	1 cut(s)	557
BclI	TGATCA	1 cut(s)	34
BfaI	CTAG	1 cut(s)	300
BfrI	CTTAAG	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	557
BmrFI	CCNGG	1 cut(s)	557
BmsI	GCATC	3 cut(s)	87, 193, 583
BpiI	GAAGAC	1 cut(s)	850
BpmI	CTGGAG	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	34
BsaAI	YACGTR	1 cut(s)	813
BsaHI	GRCGYC	1 cut(s)	27
Bse1I	ACTGG	2 cut(s)	85, 664
BseBI	CCWGG	1 cut(s)	557
BseGI	GGATG	4 cut(s)	102, 184, 316, 615
BseMII	CTCAG	1 cut(s)	619
BseNI	ACTGG	2 cut(s)	85, 664
BseSI	GKGCMC	1 cut(s)	812
BsgI	GTGCAG	1 cut(s)	835
BsiHKAI	GWGCWC	1 cut(s)	812
BslFI	GGGAC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	812
Bsp143I	GATC	5 cut(s)	34, 233, 402, 550, 705
BspACI	CCGC	1 cut(s)	791
BspCNI	CTCAG	1 cut(s)	618
BspHI	TCATGA	1 cut(s)	157
BspTI	CTTAAG	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	85, 664
BssMI	GATC	5 cut(s)	34, 233, 402, 550, 705
BssNI	GRCGYC	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	2 cut(s)	306, 487
BstACI	GRCGYC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	813
BstC8I	GCNNGC	1 cut(s)	783
BstDEI	CTNAG	1 cut(s)	605
BstF5I	GGATG	4 cut(s)	102, 184, 316, 615
BstKTI	GATC	5 cut(s)	37, 236, 405, 553, 708
BstMBI	GATC	5 cut(s)	34, 233, 402, 550, 705
BstMWI	GCNNNNNNNGC	4 cut(s)	496, 571, 637, 782
BstNI	CCWGG	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	555
BstSLI	GKGCMC	1 cut(s)	812
BstV2I	GAAGAC	1 cut(s)	850
BtsCI	GGATG	4 cut(s)	102, 184, 316, 615
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	3 cut(s)	243, 671, 783
Cac8I	GCNNGC	1 cut(s)	783
CciI	TCATGA	1 cut(s)	157
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	5 cut(s)	15, 158, 272, 616, 827
CviJI	RGCY	8 cut(s)	54, 81, 177, 291, 410, 640, 785, 842
CviKI_1	RGCY	8 cut(s)	54, 81, 177, 291, 410, 640, 785, 842
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	1 cut(s)	605
DpnI	GATC	5 cut(s)	36, 235, 404, 552, 707
DpnII	GATC	5 cut(s)	34, 233, 402, 550, 705
DraI	TTTAAA	1 cut(s)	445
DrdI	GACNNNNNNGTC	1 cut(s)	309
DseDI	GACNNNNNNGTC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	163
Eco72I	CACGTG	1 cut(s)	813
EcoRII	CCWGG	1 cut(s)	555
FaeI	CATG	5 cut(s)	18, 161, 275, 619, 830
FalI	AAGNNNNNCTT	2 cut(s)	831, 863
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	5 cut(s)	14, 157, 271, 615, 826
FbaI	TGATCA	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	313
FokI	GGATG	4 cut(s)	109, 171, 303, 622
FspBI	CTAG	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	68
HgaI	GACGC	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	5 cut(s)	18, 161, 275, 619, 830
HincII	GTYRAC	1 cut(s)	314
HindII	GTYRAC	1 cut(s)	314
HinfI	GANTC	2 cut(s)	594, 656
Hpy166II	GTNNAC	4 cut(s)	314, 423, 524, 810
Hpy188I	TCNGA	4 cut(s)	96, 407, 734, 759
Hpy188III	TCNNGA	2 cut(s)	158, 607
Hpy8I	GTNNAC	4 cut(s)	314, 423, 524, 810
HpyAV	CCTTC	1 cut(s)	710
HpyCH4III	ACNGT	2 cut(s)	306, 487
HpyCH4IV	ACGT	1 cut(s)	812
HpyCH4V	TGCA	7 cut(s)	8, 136, 362, 565, 776, 810, 816
HpyF10VI	GCNNNNNNNGC	4 cut(s)	496, 571, 637, 782
HpyF3I	CTNAG	1 cut(s)	605
HpySE526I	ACGT	1 cut(s)	812
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	5 cut(s)	18, 161, 275, 619, 830
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	5 cut(s)	34, 233, 402, 550, 705
LweI	GCATC	3 cut(s)	87, 193, 583
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	812
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	5 cut(s)	36, 235, 404, 552, 707
MboI	GATC	5 cut(s)	34, 233, 402, 550, 705
MboII	GAAGA	3 cut(s)	412, 749, 850
MfeI	CAATTG	3 cut(s)	71, 357, 801
MhlI	GDGCHC	1 cut(s)	812
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	4 cut(s)	92, 201, 616, 834
MseI	TTAA	7 cut(s)	108, 227, 252, 444, 476, 678, 699
MslI	CAYNNNNRTG	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	557
MunI	CAATTG	3 cut(s)	71, 357, 801
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	4 cut(s)	496, 571, 637, 782
NdeII	GATC	5 cut(s)	34, 233, 402, 550, 705
NlaIII	CATG	5 cut(s)	18, 161, 275, 619, 830
PagI	TCATGA	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	594, 656
PfoI	TCCNGGA	1 cut(s)	555
PmaCI	CACGTG	1 cut(s)	813
PmlI	CACGTG	1 cut(s)	813
Ppu21I	YACGTR	1 cut(s)	813
PshBI	ATTAAT	1 cut(s)	252
PsiI	TTATAA	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	555
PspCI	CACGTG	1 cut(s)	813
PspGI	CCWGG	1 cut(s)	555
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
RseI	CAYNNNNRTG	1 cut(s)	189
SalI	GTCGAC	1 cut(s)	312
SaqAI	TTAA	7 cut(s)	108, 227, 252, 444, 476, 678, 699
Sau3AI	GATC	5 cut(s)	34, 233, 402, 550, 705
ScrFI	CCNGG	1 cut(s)	557
SduI	GDGCHC	1 cut(s)	812
SfaNI	GCATC	3 cut(s)	87, 193, 583
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	2 cut(s)	49, 226
SmoI	CTYRAG	2 cut(s)	49, 226
SsiI	CCGC	1 cut(s)	791
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	555
TaaI	ACNGT	2 cut(s)	306, 487
TaiI	ACGT	1 cut(s)	815
TaqI	TCGA	2 cut(s)	313, 851
TatI	WGTACW	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	594, 656
Tru1I	TTAA	7 cut(s)	108, 227, 252, 444, 476, 678, 699
Tru9I	TTAA	7 cut(s)	108, 227, 252, 444, 476, 678, 699
TscAI	CASTG	3 cut(s)	243, 671, 783
TspDTI	ATGAA	3 cut(s)	257, 402, 729
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	3 cut(s)	243, 671, 783
Vha464I	CTTAAG	1 cut(s)	226
VneI	GTGCAC	1 cut(s)	808
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	313
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.