RLG00000019215

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008174
Physical Location & Seq
Reverse (-)
48471121 .. 48473568
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019215

Sequence Viewer

Length: 393 bp
ATGCAGTTGCTGCAGGCTCAAAGATCCCATGCTTCCTCTGATGCTGGAACCCAGCTCCTATCCAGTGGAGATGTCTTTACTCTGTTGGCTTTATTTCTTCAAAATTTGGAAAGGATTGCAAGCAAACTCCTGTGTGGAGGGACTAGGGAGGTCAGGTTGTTGCCTAGTAAAGCAGTTGAGTCATCTCTTCGAGTGGTTGGACTTGATCAAATGTATTTTAGGAAGCTATGGGAGGTTCTGACCATGAGCTGTAACGTGAGGAAGTTCCACACTAAATTGTCTCTTTGGTTGTACCTAGGATGGTTGTGGTGTATTTCAGACTGTTCTGTTATGCCATCTAGAAATCCAATCAATTTCAGGTTCTGTCATGAAAAGTCCATGAAGAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.95

Weight (kDa)

9.67

Isoelectric Point (pI)

51.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 18
AcsI RAATTY 1 cut(s) 103
AfaI GTAC 1 cut(s) 293
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 3 cut(s) 55, 226, 249
AluI AGCT 3 cut(s) 55, 226, 249
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 1 cut(s) 18
AlwNI CAGNNNCTG 2 cut(s) 10, 363
ApeKI GCWGC 1 cut(s) 10
ApoI RAATTY 1 cut(s) 103
AspA2I CCTAGG 1 cut(s) 295
AvrII CCTAGG 1 cut(s) 295
BccI CCATC 2 cut(s) 294, 343
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 4 cut(s) 144, 165, 296, 339
BfmI CTRYAG 1 cut(s) 11
BisI GCNGC 1 cut(s) 11
BlnI CCTAGG 1 cut(s) 295
BlsI GCNGC 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bse1I ACTGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 63
BseYI CCCAGC 1 cut(s) 51
BslFI GGGAC 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 23, 205
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 15
BspPI GGATC 1 cut(s) 18
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 2 cut(s) 23, 205
BssT1I CCWWGG 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 323
Bst6I CTCTTC 2 cut(s) 192, 377
BstAPI GCANNNNNTGC 1 cut(s) 10
BstC8I GCNNGC 2 cut(s) 15, 121
BstF5I GGATG 1 cut(s) 305
BstKTI GATC 2 cut(s) 26, 208
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 2 cut(s) 23, 205
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BtsCI GGATG 1 cut(s) 305
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 15, 121
CaiI CAGNNNCTG 2 cut(s) 10, 363
CciI TCATGA 1 cut(s) 367
Csp6I GTAC 1 cut(s) 292
CviAII CATG 4 cut(s) 29, 244, 368, 379
CviJI RGCY 5 cut(s) 17, 55, 89, 226, 249
CviKI_1 RGCY 5 cut(s) 17, 55, 89, 226, 249
CviQI GTAC 1 cut(s) 292
DpnI GATC 2 cut(s) 25, 207
DpnII GATC 2 cut(s) 23, 205
Eam1104I CTCTTC 2 cut(s) 192, 377
EarI CTCTTC 2 cut(s) 192, 377
Eco130I CCWWGG 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 4 cut(s) 32, 247, 371, 382
FaiI YATR 6 cut(s) 30, 229, 245, 332, 369, 380
FaqI GGGAC 1 cut(s) 154
FatI CATG 4 cut(s) 28, 243, 367, 378
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 11
FspBI CTAG 4 cut(s) 144, 165, 296, 339
GluI GCNGC 1 cut(s) 11
GsaI CCCAGC 1 cut(s) 55
Hin1II CATG 4 cut(s) 32, 247, 371, 382
HinfI GANTC 1 cut(s) 179
Hpy188I TCNGA 3 cut(s) 40, 240, 319
Hpy188III TCNNGA 2 cut(s) 339, 368
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 4, 13, 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 4 cut(s) 32, 247, 371, 382
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 23, 205
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 6 cut(s) 30, 65, 76, 139, 143, 343
LweI GCATC 1 cut(s) 31
MaeI CTAG 4 cut(s) 144, 165, 296, 339
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 251
MalI GATC 2 cut(s) 25, 207
MboI GATC 2 cut(s) 23, 205
MboII GAAGA 2 cut(s) 89, 179
MflI RGATCY 1 cut(s) 23
MluCI AATT 4 cut(s) 103, 275, 352, 388
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 5 cut(s) 46, 131, 142, 226, 252
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 2 cut(s) 23, 205
NlaIII CATG 4 cut(s) 32, 247, 371, 382
NlaIV GGNNCC 1 cut(s) 49
PagI TCATGA 1 cut(s) 367
PkrI GCNGC 1 cut(s) 12
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 15
PstNI CAGNNNCTG 2 cut(s) 10, 363
PsuI RGATCY 1 cut(s) 23
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 2 cut(s) 23, 205
SchI GAGTC 1 cut(s) 188
SetI ASST 9 cut(s) 57, 153, 158, 228, 237, 251, 258, 297, 362
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 11
Sse9I AATT 4 cut(s) 103, 275, 352, 388
SspMI CTAG 4 cut(s) 144, 165, 296, 339
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 1 cut(s) 323
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 190
TasI AATT 4 cut(s) 103, 275, 352, 388
TscAI CASTG 1 cut(s) 70
TseI GCWGC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 384
TspRI CASTG 1 cut(s) 70
XapI RAATTY 1 cut(s) 103
XbaI TCTAGA 1 cut(s) 338
XmaJI CCTAGG 1 cut(s) 295
XspI CTAG 4 cut(s) 144, 165, 296, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.