Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001159.1

Orthogroup ID

OG0008174

Physical Location & Seq

Genomic Coordinates Reverse (-)

159825 .. 161925

Gene Structure 2101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001159.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgtggctggactttaacacaaactcccccaacaatatcacctatgttgcctctccggggatgttgttgaggccatccaaggcttgtggggctgcttgctccctggcaatgcagtctcatctttctcctattattgttgagacagattgtcagagcttaatttctgctattgatgttgagggtgaggagacatcatccttgggtcttattattgagggcatcaactactcttttaggattctagttggttcttccttgagacatgtgtttcatgaaggctacatccagccttggccgaaactggagaggctaccaaagctaatggtggtccaatatagtgtatggatgcactcatcttgggtgttaagatcagtttcaaaggtcgtgcctttaggccatgtttgggcggtggcttcgatagcgggggtggcgagactgtctgcgtcttggtcagaatggatcaaacggtgggccgcgccgctatccctggtaacagtgatgacatcttggctgcttcagctaggtttccttgatgggcctatgttgttcgctgggcctggagcattgaaaggagtatatggaccgaatttgcttgggtccagaaaaattattgggtctgcatatctcaataagcctcctaacccttgctggcagggcatgggaaaaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

24.41

Weight (kDa)

9.12

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008174)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130961 RchiOBHm_Chr2g0131531 RchiOBHm_Chr2g0131581 RchiOBHm_Chr2g0131861
rosa_laevigata	RLG00000019215 RLG00000019216 RLG00000019217
rosa_multiflora	Rmu_sc0001159.1_g000032
rosa_roxburghii	Rroxscaffold_2G00112510 Rroxscaffold_2G00112560 Rroxscaffold_2G00112570 Rroxscaffold_2G00112790 Rroxscaffold_2G00113420
rosa_rugosa	Rorug02G0291900 Rorug02G0294200 Rorug02G0294300 Rorug02G0300500
rosa_samantha	Rh2BG353800 Rh2BG359700 Rh2BG469300 Rh2DG376800 Rh5CG304700
rosa_wichuraiana	Rw2G028640 Rw2G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	476
AciI	CCGC	4 cut(s)	407, 422, 474, 479
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	1 cut(s)	293
AcsI	RAATTY	2 cut(s)	586, 666
AcuI	CTGAAG	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	57, 403
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	378, 568
AhdI	GACNNNNNGTC	1 cut(s)	147
AjnI	CCWGG	3 cut(s)	102, 486, 556
AluBI	AGCT	3 cut(s)	156, 319, 520
AluI	AGCT	3 cut(s)	156, 319, 520
Alw26I	GTCTC	5 cut(s)	120, 134, 182, 253, 427
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	6 cut(s)	71, 293, 394, 471, 536, 554
ApeKI	GCWGC	2 cut(s)	92, 511
ApoI	RAATTY	2 cut(s)	586, 666
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	6 cut(s)	328, 471, 536, 554, 581, 597
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	31, 194
AvaII	GGWCC	3 cut(s)	328, 581, 597
BbvI	GCAGC	2 cut(s)	79, 498
BccI	CCATC	2 cut(s)	82, 527
BciT130I	CCWGG	3 cut(s)	104, 488, 558
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	5 cut(s)	120, 134, 182, 253, 427
BfaI	CTAG	2 cut(s)	242, 521
BisI	GCNGC	4 cut(s)	93, 474, 479, 512
BlsI	GCNGC	4 cut(s)	94, 475, 480, 513
Bme1390I	CCNGG	4 cut(s)	57, 104, 488, 558
Bme18I	GGWCC	3 cut(s)	328, 581, 597
BmeRI	GACNNNNNGTC	1 cut(s)	147
BmgT120I	GGNCC	6 cut(s)	328, 471, 536, 554, 581, 597
BmiI	GGNNCC	1 cut(s)	598
BmrFI	CCNGG	4 cut(s)	57, 104, 488, 558
BmsI	GCATC	2 cut(s)	228, 336
BpmI	CTGGAG	2 cut(s)	323, 579
BpuEI	CTTGAG	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	57
BsaJI	CCNNGG	6 cut(s)	56, 78, 102, 198, 290, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 403
Bse1I	ACTGG	1 cut(s)	306
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	3 cut(s)	104, 488, 558
BseDI	CCNNGG	6 cut(s)	56, 78, 102, 198, 290, 486
BseGI	GGATG	5 cut(s)	66, 74, 194, 282, 351
BseLI	CCNNNNNNNGG	2 cut(s)	57, 403
BseMI	GCAATG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	79, 498
BseYI	CCCAGC	1 cut(s)	551
Bsh1236I	CGCG	1 cut(s)	476
BshFI	GGCC	6 cut(s)	73, 295, 396, 473, 538, 556
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	57, 403
BsmAI	GTCTC	5 cut(s)	120, 134, 182, 253, 427
BsnI	GGCC	6 cut(s)	73, 295, 396, 473, 538, 556
Bsp143I	GATC	2 cut(s)	368, 459
BspACI	CCGC	4 cut(s)	407, 422, 474, 479
BspANI	GGCC	6 cut(s)	73, 295, 396, 473, 538, 556
BspFNI	CGCG	1 cut(s)	476
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	598
BspPI	GGATC	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	6 cut(s)	56, 78, 102, 198, 290, 486
BssMI	GATC	2 cut(s)	368, 459
BssT1I	CCWWGG	3 cut(s)	78, 198, 290
Bst2UI	CCWGG	3 cut(s)	104, 488, 558
Bst4CI	ACNGT	3 cut(s)	438, 468, 496
BstC8I	GCNNGC	2 cut(s)	97, 650
BstF5I	GGATG	5 cut(s)	66, 74, 194, 282, 351
BstFNI	CGCG	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	2 cut(s)	371, 462
BstMAI	GTCTC	5 cut(s)	120, 134, 182, 253, 427
BstMBI	GATC	2 cut(s)	368, 459
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 316, 419, 428, 517, 654
BstNI	CCWGG	3 cut(s)	104, 488, 558
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	4 cut(s)	55, 102, 486, 556
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	2 cut(s)	79, 498
BsuRI	GGCC	6 cut(s)	73, 295, 396, 473, 538, 556
BtsCI	GGATG	5 cut(s)	66, 74, 194, 282, 351
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	2 cut(s)	97, 650
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	1 cut(s)	478
Cfr13I	GGNCC	6 cut(s)	328, 471, 536, 554, 581, 597
CseI	GACGC	1 cut(s)	432
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	4 cut(s)	263, 272, 398, 658
DpnI	GATC	2 cut(s)	370, 461
DpnII	GATC	2 cut(s)	368, 459
DriI	GACNNNNNGTC	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	293
Eam1105I	GACNNNNNGTC	1 cut(s)	147
Eco130I	CCWWGG	3 cut(s)	78, 198, 290
Eco47I	GGWCC	3 cut(s)	328, 581, 597
Eco57I	CTGAAG	1 cut(s)	500
EcoRII	CCWGG	3 cut(s)	102, 486, 556
EcoT14I	CCWWGG	3 cut(s)	78, 198, 290
ErhI	CCWWGG	3 cut(s)	78, 198, 290
FaeI	CATG	4 cut(s)	266, 275, 401, 661
FatI	CATG	4 cut(s)	262, 271, 397, 657
FauI	CCCGC	1 cut(s)	415
Fnu4HI	GCNGC	4 cut(s)	93, 474, 479, 512
FokI	GGATG	5 cut(s)	61, 73, 181, 269, 358
Fsp4HI	GCNGC	4 cut(s)	93, 474, 479, 512
FspBI	CTAG	2 cut(s)	242, 521
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	4 cut(s)	93, 474, 479, 512
GsaI	CCCAGC	1 cut(s)	555
GsuI	CTGGAG	2 cut(s)	323, 579
HaeIII	GGCC	6 cut(s)	73, 295, 396, 473, 538, 556
HapII	CCGG	1 cut(s)	56
HgaI	GACGC	1 cut(s)	432
HhaI	GCGC	1 cut(s)	478
Hin1II	CATG	4 cut(s)	266, 275, 401, 661
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	2 cut(s)	31, 194
Hpy188I	TCNGA	2 cut(s)	153, 454
Hpy188III	TCNNGA	2 cut(s)	272, 600
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	3 cut(s)	438, 468, 496
HpyCH4V	TGCA	3 cut(s)	112, 349, 620
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 316, 419, 428, 517, 654
Hsp92II	CATG	4 cut(s)	266, 275, 401, 661
HspAI	GCGC	1 cut(s)	476
Kzo9I	GATC	2 cut(s)	368, 459
LmnI	GCTCC	2 cut(s)	104, 560
Lsp1109I	GCAGC	2 cut(s)	79, 498
LweI	GCATC	2 cut(s)	228, 336
MaeI	CTAG	2 cut(s)	242, 521
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	2 cut(s)	370, 461
MboI	GATC	2 cut(s)	368, 459
MboII	GAAGA	1 cut(s)	243
MluCI	AATT	4 cut(s)	159, 586, 606, 666
MnlI	CCTC	7 cut(s)	61, 63, 172, 178, 208, 300, 645
MseI	TTAA	4 cut(s)	15, 158, 365, 670
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	4 cut(s)	57, 104, 488, 558
MvaI	CCWGG	3 cut(s)	104, 488, 558
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	6 cut(s)	89, 316, 419, 428, 517, 654
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	368, 459
NlaIII	CATG	4 cut(s)	266, 275, 401, 661
NlaIV	GGNNCC	1 cut(s)	598
NspI	RCATGY	1 cut(s)	266
PagI	TCATGA	1 cut(s)	271
PciI	ACATGT	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	4 cut(s)	94, 475, 480, 513
PscI	ACATGT	1 cut(s)	262
Psp6I	CCWGG	3 cut(s)	102, 486, 556
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	3 cut(s)	102, 486, 556
PspN4I	GGNNCC	1 cut(s)	598
PspPI	GGNCC	6 cut(s)	328, 471, 536, 554, 581, 597
SaqAI	TTAA	4 cut(s)	15, 158, 365, 670
SatI	GCNGC	4 cut(s)	93, 474, 479, 512
Sau3AI	GATC	2 cut(s)	368, 459
Sau96I	GGNCC	6 cut(s)	328, 471, 536, 554, 581, 597
ScrFI	CCNGG	4 cut(s)	57, 104, 488, 558
SetI	ASST	6 cut(s)	44, 158, 321, 384, 522, 526
SfaNI	GCATC	2 cut(s)	228, 336
SinI	GGWCC	3 cut(s)	328, 581, 597
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	4 cut(s)	159, 586, 606, 666
SsiI	CCGC	4 cut(s)	407, 422, 474, 479
SspMI	CTAG	2 cut(s)	242, 521
StyD4I	CCNGG	4 cut(s)	55, 102, 486, 556
StyI	CCWWGG	3 cut(s)	78, 198, 290
TaaI	ACNGT	3 cut(s)	438, 468, 496
TaqI	TCGA	1 cut(s)	416
TaqII	GACCGA	1 cut(s)	598
TasI	AATT	4 cut(s)	159, 586, 606, 666
TauI	GCSGC	2 cut(s)	476, 481
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	4 cut(s)	15, 158, 365, 670
Tru9I	TTAA	4 cut(s)	15, 158, 365, 670
TscAI	CASTG	1 cut(s)	501
TseI	GCWGC	2 cut(s)	92, 511
TspDTI	ATGAA	2 cut(s)	260, 288
TspRI	CASTG	1 cut(s)	501
VpaK11BI	GGWCC	3 cut(s)	328, 581, 597
XapI	RAATTY	2 cut(s)	586, 666
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	2 cut(s)	242, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.