Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008174

Physical Location & Seq

Genomic Coordinates Reverse (-)

39014548 .. 39026878

Gene Structure 12331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGACAACCTCTGCCACTTCTTCACTTCTCTTCCAATTGAAAGCACACCTCGTTGCAGGGATTGAAAGCACACCTCAAAGTTGTAATGGCTGGATTCCCCAAGACCGGTTGCCCCCATCCTTAGAGGTAGAGATATCCTCTGGTGCTGAAACTGATGATGCTGAAACCCAACTTCCTGTCAAGTGTGGATGTCTTTACCCAGTTGGCTTGATTTCTTCAAGTTCAGGTTCTTACCAACACCAGGAAGGTTTGGGAGGTTGTGACCATGAGCTCTCATGCAAGGAAGTTCAACATCAGATATTTTCTTCGGTTGTACCTAGGAATGTTATAATCTACTTAAGGCGACCAGTTGGTAGTGAAATTGATAGTAAAATCATTCATCATGTGGATATTGCTTCTGGCTTGTACCCTATACTGTTCTGTTATCCATTCTCGCTAGAAAGGATTAATCATTTTCATCAGACACCTGACAGGGAGTGGTTTAAAACTGAGGCTGTTCTTCGTTTTAGCTTGGGAAACTTTCTGTTCTTCACCATCCTGTCAGTTGTGATGATTGGTGTGATGAGTCAAAAGGATCCCTGTGATAGTATCCACTATCCACCATGGTGGATGGATGATGAAAGCTACTTACTGGTTCCTTTTGGTGATCTTCTCATTGAAAGATGTGCATGTGCTGATACTCTCTCTCTTGTTGCTCGAATATTGCATAAATCCAAGGCTCATCTCCAGGCAATTCTTTTTCAAAAAAATGCTATTGAAGATTTCTGTGAATTTGGTAGGAGGAGAGAAGAAGCACAGGCACTTCTGAAGGAGTCCCTTGAATCGTTGGAGGACATCGGTGCATCTCTTATGTTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015194 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015825 GO:0015849 GO:0022857 GO:0022889 GO:0032329 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Serinc

Protein Analysis

286

Amino Acids

32.06

Weight (kDa)

5.25

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serinc	PF03348	155 - 213	3e-07	Serine incorporator (Serinc)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008174)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130961 RchiOBHm_Chr2g0131531 RchiOBHm_Chr2g0131581 RchiOBHm_Chr2g0131861
rosa_laevigata	RLG00000019215 RLG00000019216 RLG00000019217
rosa_multiflora	Rmu_sc0001159.1_g000032
rosa_roxburghii	Rroxscaffold_2G00112510 Rroxscaffold_2G00112560 Rroxscaffold_2G00112570 Rroxscaffold_2G00112790 Rroxscaffold_2G00113420
rosa_rugosa	Rorug02G0291900 Rorug02G0294200 Rorug02G0294300 Rorug02G0300500
rosa_samantha	Rh2BG353800 Rh2BG359700 Rh2BG469300 Rh2DG376800 Rh5CG304700
rosa_wichuraiana	Rw2G028640 Rw2G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
AclWI	GGATC	2 cut(s)	569, 582
AcsI	RAATTY	1 cut(s)	770
AcuI	CTGAAG	1 cut(s)	827
AfaI	GTAC	2 cut(s)	315, 407
AfiI	CCNNNNNNNGG	2 cut(s)	105, 241
AflII	CTTAAG	1 cut(s)	337
AgeI	ACCGGT	1 cut(s)	105
AgsI	TTSAA	9 cut(s)	40, 65, 219, 290, 659, 743, 758, 821, 856
AjnI	CCWGG	2 cut(s)	240, 726
AleI	CACNNNNGTG	1 cut(s)	604
AluBI	AGCT	3 cut(s)	271, 510, 624
AluI	AGCT	3 cut(s)	271, 510, 624
Alw21I	GWGCWC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	569, 582
ApoI	RAATTY	1 cut(s)	770
AseI	ATTAAT	1 cut(s)	447
AsiGI	ACCGGT	1 cut(s)	105
AspA2I	CCTAGG	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	523, 656
AvrII	CCTAGG	1 cut(s)	317
BamHI	GGATCC	1 cut(s)	574
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	273
BccI	CCATC	3 cut(s)	124, 542, 604
BciT130I	CCWGG	2 cut(s)	242, 728
BciVI	GTATCC	1 cut(s)	599
BfaI	CTAG	2 cut(s)	318, 437
BfrI	CTTAAG	1 cut(s)	337
BfuI	GTATCC	1 cut(s)	599
BlnI	CCTAGG	1 cut(s)	317
Bme1390I	CCNGG	2 cut(s)	242, 728
BmiI	GGNNCC	2 cut(s)	576, 636
BmrFI	CCNGG	2 cut(s)	242, 728
BmrI	ACTGGG	1 cut(s)	194
BmsI	GCATC	2 cut(s)	148, 851
BmuI	ACTGGG	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	1 cut(s)	710
BsaJI	CCNNGG	3 cut(s)	317, 602, 714
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 241
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	3 cut(s)	200, 347, 636
BseBI	CCWGG	2 cut(s)	242, 728
BseDI	CCNNGG	3 cut(s)	317, 602, 714
BseGI	GGATG	5 cut(s)	116, 194, 534, 615, 619
BseLI	CCNNNNNNNGG	2 cut(s)	105, 241
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	3 cut(s)	200, 347, 636
BseRI	GAGGAG	1 cut(s)	796
BshTI	ACCGGT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	799
BslI	CCNNNNNNNGG	2 cut(s)	105, 241
BsmFI	GGGAC	1 cut(s)	799
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	574, 646
Bsp19I	CCATGG	1 cut(s)	602
BspCNI	CTCAG	1 cut(s)	481
BspLI	GGNNCC	2 cut(s)	576, 636
BspPI	GGATC	2 cut(s)	569, 582
BspTI	CTTAAG	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	105
BsrI	ACTGG	3 cut(s)	200, 347, 636
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	317, 602, 714
BssMI	GATC	2 cut(s)	574, 646
BssT1I	CCWWGG	3 cut(s)	317, 602, 714
Bst2UI	CCWGG	2 cut(s)	242, 728
Bst4CI	ACNGT	1 cut(s)	417
Bst6I	CTCTTC	1 cut(s)	35
BstAFI	CTTAAG	1 cut(s)	337
BstDEI	CTNAG	2 cut(s)	121, 489
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	5 cut(s)	116, 194, 534, 615, 619
BstKTI	GATC	2 cut(s)	577, 649
BstMBI	GATC	2 cut(s)	574, 646
BstNI	CCWGG	2 cut(s)	242, 728
BstNSI	RCATGY	1 cut(s)	672
BstSCI	CCNGG	2 cut(s)	240, 726
BstX2I	RGATCY	1 cut(s)	574
BstXI	CCANNNNNNTGG	1 cut(s)	606
BstYI	RGATCY	1 cut(s)	574
BsuI	GTATCC	1 cut(s)	599
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	5 cut(s)	116, 194, 534, 615, 619
Cfr10I	RCCGGY	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	314, 406
CspAI	ACCGGT	1 cut(s)	105
CviAII	CATG	5 cut(s)	266, 276, 383, 603, 669
CviJI	RGCY	8 cut(s)	90, 207, 271, 402, 494, 510, 624, 719
CviKI_1	RGCY	8 cut(s)	90, 207, 271, 402, 494, 510, 624, 719
CviQI	GTAC	2 cut(s)	314, 406
DdeI	CTNAG	2 cut(s)	121, 489
DpnI	GATC	2 cut(s)	576, 648
DpnII	GATC	2 cut(s)	574, 646
DraI	TTTAAA	1 cut(s)	484
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	3 cut(s)	317, 602, 714
Eco24I	GRGCYC	1 cut(s)	273
Eco32I	GATATC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	827
EcoICRI	GAGCTC	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	240, 726
EcoRV	GATATC	1 cut(s)	135
EcoT14I	CCWWGG	3 cut(s)	317, 602, 714
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	3 cut(s)	317, 602, 714
FaeI	CATG	5 cut(s)	269, 279, 386, 606, 672
FaiI	YATR	9 cut(s)	267, 277, 329, 384, 413, 604, 670, 708, 851
FaqI	GGGAC	1 cut(s)	799
FatI	CATG	5 cut(s)	265, 275, 382, 602, 668
FokI	GGATG	5 cut(s)	103, 201, 521, 622, 626
FriOI	GRGCYC	1 cut(s)	273
FspBI	CTAG	2 cut(s)	318, 437
GsuI	CTGGAG	1 cut(s)	710
HapII	CCGG	1 cut(s)	106
Hin1II	CATG	5 cut(s)	269, 279, 386, 606, 672
HinfI	GANTC	4 cut(s)	94, 565, 812, 821
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	2 cut(s)	523, 656
Hpy188I	TCNGA	3 cut(s)	297, 462, 807
HpyAV	CCTTC	2 cut(s)	239, 802
HpyCH4III	ACNGT	1 cut(s)	417
HpyCH4V	TGCA	5 cut(s)	56, 279, 668, 706, 842
HpyF3I	CTNAG	2 cut(s)	121, 489
Hsp92II	CATG	5 cut(s)	269, 279, 386, 606, 672
Kzo9I	GATC	2 cut(s)	574, 646
LweI	GCATC	2 cut(s)	148, 851
MaeI	CTAG	2 cut(s)	318, 437
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	2 cut(s)	576, 648
MboI	GATC	2 cut(s)	574, 646
MboII	GAAGA	9 cut(s)	12, 22, 207, 297, 491, 520, 641, 770, 800
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	4 cut(s)	35, 360, 732, 770
MlyI	GAGTC	2 cut(s)	574, 821
MmeI	TCCRAC	1 cut(s)	807
MnlI	CCTC	9 cut(s)	19, 59, 84, 118, 148, 248, 484, 774, 823
MseI	TTAA	3 cut(s)	338, 447, 483
MslI	CAYNNNNRTG	1 cut(s)	604
MspCI	CTTAAG	1 cut(s)	337
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	2 cut(s)	242, 728
MunI	CAATTG	1 cut(s)	35
MvaI	CCWGG	2 cut(s)	242, 728
NcoI	CCATGG	1 cut(s)	602
NdeII	GATC	2 cut(s)	574, 646
NlaIII	CATG	5 cut(s)	269, 279, 386, 606, 672
NlaIV	GGNNCC	2 cut(s)	576, 636
NmuCI	GTSAC	1 cut(s)	260
NspI	RCATGY	1 cut(s)	672
OliI	CACNNNNGTG	1 cut(s)	604
PfeI	GAWTC	2 cut(s)	94, 821
PinAI	ACCGGT	1 cut(s)	105
PleI	GAGTC	2 cut(s)	573, 820
PpsI	GAGTC	2 cut(s)	573, 820
PshBI	ATTAAT	1 cut(s)	447
PsiI	TTATAA	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	273
Psp6I	CCWGG	2 cut(s)	240, 726
PspGI	CCWGG	2 cut(s)	240, 726
PspN4I	GGNNCC	2 cut(s)	576, 636
PsuI	RGATCY	1 cut(s)	574
RsaI	GTAC	2 cut(s)	315, 407
RsaNI	GTAC	2 cut(s)	314, 406
RseI	CAYNNNNRTG	1 cut(s)	604
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	338, 447, 483
Sau3AI	GATC	2 cut(s)	574, 646
SchI	GAGTC	2 cut(s)	574, 821
ScrFI	CCNGG	2 cut(s)	242, 728
SduI	GDGCHC	1 cut(s)	273
SfaNI	GCATC	2 cut(s)	148, 851
SmiMI	CAYNNNNRTG	1 cut(s)	604
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	4 cut(s)	35, 360, 732, 770
SspI	AATATT	1 cut(s)	702
SspMI	CTAG	2 cut(s)	318, 437
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	2 cut(s)	240, 726
StyI	CCWWGG	3 cut(s)	317, 602, 714
TaaI	ACNGT	1 cut(s)	417
TaqI	TCGA	1 cut(s)	697
TasI	AATT	4 cut(s)	35, 360, 732, 770
TfiI	GAWTC	2 cut(s)	94, 821
Tru1I	TTAA	3 cut(s)	338, 447, 483
Tru9I	TTAA	3 cut(s)	338, 447, 483
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	3 cut(s)	368, 446, 633
Vha464I	CTTAAG	1 cut(s)	337
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	1 cut(s)	770
XceI	RCATGY	1 cut(s)	672
XmaJI	CCTAGG	1 cut(s)	317
XspI	CTAG	2 cut(s)	318, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.