Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008174

Physical Location & Seq

Genomic Coordinates Forward (+)

48573549 .. 48576961

Gene Structure 3413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG353800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAGAAGTCATGGAGATAATAATATTGGTTATGGAAATAGCAGAAAGGATTGCAAGTACTCTTCCATGAGTAAATGGCAAGGGATTAATCATGTTCATCAGACACCTGACAGGGAGTGGTTTAAAACTGAGGCCGTTCTTCGTTTTAGCTTGGGAAACTTTCTGTTCTTCACCATCCTGTCAGTTGTGATGATTGGTGTGATGAGTCAAAAGGATCCCCGTGATATTTCTATGGAACTTTTGGCTATTAGCAGTGTTTGGATGAGGGATAATATGGGGGGAGATGACATTTTGGTGGGACTAAAAATCTCACATGGAAAATCCCTCGTTTGTTCCACAGCGCGAAGAAGACGACTACGCATCGGCCTTGATTTCTGGCTCTCTCTTCTTCTTGCATCGCTGTTCTCCAGGAAAGATGTGCATGTGCTGATACTCTCTCTCTTGTTGCTCGAATATTGCATAAATCCAAGGCTCATCTCCAGTCAATTCTTTTTCAAAAAAATGCTGTTGAAGATTTCTGTGAATTTGGAGGAGAGAAGAAGCACAGGCACTTCTGAAGGAGTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015194 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015825 GO:0015849 GO:0022857 GO:0022889 GO:0032329 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Serinc

Protein Analysis

189

Amino Acids

21.63

Weight (kDa)

9.79

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serinc	PF03348	32 - 75	2.5e-06	Serine incorporator (Serinc)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008174)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130961 RchiOBHm_Chr2g0131531 RchiOBHm_Chr2g0131581 RchiOBHm_Chr2g0131861
rosa_laevigata	RLG00000019215 RLG00000019216 RLG00000019217
rosa_multiflora	Rmu_sc0001159.1_g000032
rosa_roxburghii	Rroxscaffold_2G00112510 Rroxscaffold_2G00112560 Rroxscaffold_2G00112570 Rroxscaffold_2G00112790 Rroxscaffold_2G00113420
rosa_rugosa	Rorug02G0291900 Rorug02G0294200 Rorug02G0294300 Rorug02G0300500
rosa_samantha	Rh2BG353800 Rh2BG359700 Rh2BG469300 Rh2DG376800 Rh5CG304700
rosa_wichuraiana	Rw2G028640 Rw2G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	343
AclWI	GGATC	2 cut(s)	209, 222
AcsI	RAATTY	1 cut(s)	523
AfaI	GTAC	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	496, 511
AjnI	CCWGG	1 cut(s)	407
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
AlwI	GGATC	2 cut(s)	209, 222
AoxI	GGCC	2 cut(s)	132, 364
ApoI	RAATTY	1 cut(s)	523
AseI	ATTAAT	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	163
BamHI	GGATCC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	355
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	409
BmcAI	AGTACT	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	409
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	409
BmsI	GCATC	2 cut(s)	369, 404
BpiI	GAAGAC	1 cut(s)	355
BpmI	CTGGAG	2 cut(s)	391, 463
BsaJI	CCNNGG	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	2 cut(s)	174, 267
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	1 cut(s)	545
Bsh1236I	CGCG	1 cut(s)	343
BshFI	GGCC	2 cut(s)	134, 366
BslFI	GGGAC	2 cut(s)	312, 548
BsmFI	GGGAC	2 cut(s)	312, 548
BsnI	GGCC	2 cut(s)	134, 366
Bsp143I	GATC	1 cut(s)	214
BspANI	GGCC	2 cut(s)	134, 366
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	216
BspPI	GGATC	2 cut(s)	209, 222
BsrI	ACTGG	1 cut(s)	480
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	467
Bst2UI	CCWGG	1 cut(s)	409
Bst6I	CTCTTC	2 cut(s)	67, 390
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	174, 267
BstFNI	CGCG	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	409
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	407
BstUI	CGCG	1 cut(s)	343
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	134, 366
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	174, 267
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	259
CfoI	GCGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	5 cut(s)	11, 67, 92, 314, 422
CviJI	RGCY	6 cut(s)	134, 150, 245, 366, 379, 472
CviKI_1	RGCY	6 cut(s)	134, 150, 245, 366, 379, 472
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraI	TTTAAA	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	67, 390
EarI	CTCTTC	2 cut(s)	67, 390
Eco130I	CCWWGG	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	467
FaeI	CATG	5 cut(s)	14, 70, 95, 317, 425
FaiI	YATR	9 cut(s)	12, 33, 68, 93, 233, 275, 315, 423, 461
FaqI	GGGAC	2 cut(s)	312, 548
FatI	CATG	5 cut(s)	10, 66, 91, 313, 421
FokI	GGATG	2 cut(s)	161, 274
GlaI	GCGC	1 cut(s)	342
GsuI	CTGGAG	2 cut(s)	391, 463
HaeIII	GGCC	2 cut(s)	134, 366
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	5 cut(s)	14, 70, 95, 317, 425
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	2 cut(s)	205, 561
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	102, 556
HpyAV	CCTTC	1 cut(s)	551
HpyCH4V	TGCA	4 cut(s)	54, 395, 421, 459
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	5 cut(s)	14, 70, 95, 317, 425
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	214
LpnPI	CCDG	8 cut(s)	97, 120, 191, 361, 394, 421, 493, 531
LweI	GCATC	2 cut(s)	369, 404
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	9 cut(s)	54, 131, 160, 357, 360, 377, 380, 523, 549
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	2 cut(s)	485, 523
MlyI	GAGTC	2 cut(s)	214, 570
MnlI	CCTC	4 cut(s)	124, 258, 335, 523
MseI	TTAA	2 cut(s)	87, 123
MslI	CAYNNNNRTG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	409
MvnI	CGCG	1 cut(s)	343
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	5 cut(s)	14, 70, 95, 317, 425
NlaIV	GGNNCC	1 cut(s)	216
NspI	RCATGY	1 cut(s)	425
PfoI	TCCNGGA	1 cut(s)	407
PleI	GAGTC	2 cut(s)	213, 569
PpsI	GAGTC	2 cut(s)	213, 569
PshBI	ATTAAT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	87, 123
Sau3AI	GATC	1 cut(s)	214
ScaI	AGTACT	1 cut(s)	59
SchI	GAGTC	2 cut(s)	214, 570
ScrFI	CCNGG	1 cut(s)	409
SetI	ASST	2 cut(s)	109, 152
SfaNI	GCATC	2 cut(s)	369, 404
SmiMI	CAYNNNNRTG	1 cut(s)	293
Sse9I	AATT	2 cut(s)	485, 523
SspI	AATATT	2 cut(s)	25, 455
StyD4I	CCNGG	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	467
TaqI	TCGA	1 cut(s)	450
TasI	AATT	2 cut(s)	485, 523
TatI	WGTACW	1 cut(s)	57
Tru1I	TTAA	2 cut(s)	87, 123
Tru9I	TTAA	2 cut(s)	87, 123
TscAI	CASTG	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	259
VspI	ATTAAT	1 cut(s)	87
XapI	RAATTY	1 cut(s)	523
XceI	RCATGY	1 cut(s)	425
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.