RLG00000019216

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008174
Physical Location & Seq
Reverse (-)
48488174 .. 48489081
908 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019216

Sequence Viewer

Length: 321 bp
ATGATCCACTCTTATATTCAGGGATTGGGAGGGTCGAACCTCCAGGTTGTAATGGCTGGATTCCCTAAGACCGAATGTCCCCATCCTCAGTTGGGCCTCTTTTTCCAAATCTCTTGTGACCATGTGCTCTCATGCAAGGAAATTCAACACCAGATTTTTTCTTTGGTTCTACCTAGGAATGTTATAATCTACTTAAGGCGATCAGTGGGTAGTGAAATTAATAGTAACATCATTCATCATGTGGATATTGCTTCTGGCTTGTACGCTAGACTGTTCTGTCGACATCCCATATATCCTGCTAAAAATGTCAGCACTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.89

Weight (kDa)

8.71

Isoelectric Point (pI)

63.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 185
AasI GACNNNNNNGTC 1 cut(s) 276
AccI GTMKAC 1 cut(s) 280
AcsI RAATTY 1 cut(s) 141
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 92
AflII CTTAAG 1 cut(s) 193
AgsI TTSAA 1 cut(s) 146
AhdI GACNNNNNGTC 1 cut(s) 75
AjnI CCWGG 1 cut(s) 42
Alw21I GWGCWC 1 cut(s) 129
AoxI GGCC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 141
AseI ATTAAT 1 cut(s) 219
AspA2I CCTAGG 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 94
AvrII CCTAGG 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 129
BccI CCATC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 44
BfaI CTAG 3 cut(s) 174, 267, 319
BfrI CTTAAG 1 cut(s) 193
BlnI CCTAGG 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 44
BmeRI GACNNNNNGTC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 92
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 2 cut(s) 82, 283
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 101
BshFI GGCC 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 129
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 3, 200
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 100
BspTI CTTAAG 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 173
BssMI GATC 2 cut(s) 3, 200
BssT1I CCWWGG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 273
BstAFI CTTAAG 1 cut(s) 193
BstDEI CTNAG 2 cut(s) 66, 87
BstF5I GGATG 2 cut(s) 82, 283
BstKTI GATC 2 cut(s) 6, 203
BstMBI GATC 2 cut(s) 3, 200
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 2 cut(s) 82, 283
BtsIMutI CAGTG 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 262
CviAII CATG 3 cut(s) 122, 132, 239
CviJI RGCY 3 cut(s) 56, 96, 258
CviKI_1 RGCY 3 cut(s) 56, 96, 258
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 2 cut(s) 66, 87
DpnI GATC 2 cut(s) 5, 202
DpnII GATC 2 cut(s) 3, 200
DrdI GACNNNNNNGTC 1 cut(s) 276
DriI GACNNNNNGTC 1 cut(s) 75
DseDI GACNNNNNNGTC 1 cut(s) 276
Eam1105I GACNNNNNGTC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 3 cut(s) 125, 135, 242
FaiI YATR 7 cut(s) 15, 123, 133, 185, 240, 290, 292
FaqI GGGAC 1 cut(s) 63
FatI CATG 3 cut(s) 121, 131, 238
FblI GTMKAC 1 cut(s) 280
FokI GGATG 2 cut(s) 69, 270
FspBI CTAG 3 cut(s) 174, 267, 319
GsuI CTGGAG 1 cut(s) 26
HaeIII GGCC 1 cut(s) 96
Hin1II CATG 3 cut(s) 125, 135, 242
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HinfI GANTC 1 cut(s) 60
Hpy166II GTNNAC 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 281
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4V TGCA 1 cut(s) 135
HpyF3I CTNAG 2 cut(s) 66, 87
Hsp92II CATG 3 cut(s) 125, 135, 242
Kzo9I GATC 2 cut(s) 3, 200
LpnPI CCDG 7 cut(s) 5, 29, 42, 56, 164, 240, 309
MaeI CTAG 3 cut(s) 174, 267, 319
MaeIII GTNAC 2 cut(s) 116, 224
MalI GATC 2 cut(s) 5, 202
MboI GATC 2 cut(s) 3, 200
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 2 cut(s) 141, 216
MnlI CCTC 4 cut(s) 23, 50, 96, 107
MseI TTAA 2 cut(s) 194, 219
MspCI CTTAAG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
NdeII GATC 2 cut(s) 3, 200
NlaIII CATG 3 cut(s) 125, 135, 242
NmuCI GTSAC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 60
PshBI ATTAAT 1 cut(s) 219
PsiI TTATAA 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspPI GGNCC 1 cut(s) 94
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SalI GTCGAC 1 cut(s) 279
SaqAI TTAA 2 cut(s) 194, 219
Sau3AI GATC 2 cut(s) 3, 200
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 1 cut(s) 129
SetI ASST 3 cut(s) 42, 48, 175
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 2 cut(s) 141, 216
SspMI CTAG 3 cut(s) 174, 267, 319
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 1 cut(s) 273
TaqI TCGA 2 cut(s) 35, 280
TaqII GACCGA 1 cut(s) 86
TasI AATT 2 cut(s) 141, 216
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 2 cut(s) 194, 219
Tru9I TTAA 2 cut(s) 194, 219
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 224
TspRI CASTG 1 cut(s) 210
Vha464I CTTAAG 1 cut(s) 193
VspI ATTAAT 1 cut(s) 219
XapI RAATTY 1 cut(s) 141
XmaJI CCTAGG 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 3 cut(s) 174, 267, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.