Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008174

Physical Location & Seq

Genomic Coordinates Forward (+)

66273082 .. 66273498

Gene Structure 417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG469300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAGATTGATCCTCTTGTTAGGCTACATCCAGCCTTGGCCGAAACTGGAGAGGCTACCAAAGCTAATGGTGGTCCAATATAGTGTATGGATGCACTCATCTTGGGTGTTAAGATCAGTTTCAAAGGTCGTGCCTTTAGGCCATGTTTGGGCGGTGGCTTCGATAGCGGGGGTGGCGAGACTGTCTACGTCTTGGTCAGAATGGATCAAACGGTGGGCCGCGCCGCTATCCCTGGTAACAGTGATGACATCTTGGCTGCTTCAGCTAGGTTTCCTTGATGGGCCTATGTTGTTCGCTGGGCCTGGAGCATTGAAAGGAGCATATGGACCGAATTTGCTTGGGTCCAGAAAAATTATTGGGTCTGCATATCTCAATAAGCCTCCTAACCCTTGCTGGCAGGGCATGGGAAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.31

Weight (kDa)

10.45

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008174)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130961 RchiOBHm_Chr2g0131531 RchiOBHm_Chr2g0131581 RchiOBHm_Chr2g0131861
rosa_laevigata	RLG00000019215 RLG00000019216 RLG00000019217
rosa_multiflora	Rmu_sc0001159.1_g000032
rosa_roxburghii	Rroxscaffold_2G00112510 Rroxscaffold_2G00112560 Rroxscaffold_2G00112570 Rroxscaffold_2G00112790 Rroxscaffold_2G00113420
rosa_rugosa	Rorug02G0291900 Rorug02G0294200 Rorug02G0294300 Rorug02G0300500
rosa_samantha	Rh2BG353800 Rh2BG359700 Rh2BG469300 Rh2DG376800 Rh5CG304700
rosa_wichuraiana	Rw2G028640 Rw2G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	185
AccII	CGCG	1 cut(s)	221
AciI	CCGC	4 cut(s)	152, 167, 219, 224
AclWI	GGATC	2 cut(s)	4, 212
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	2 cut(s)	331, 411
AcuI	CTGAAG	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	123, 313
AjnI	CCWGG	2 cut(s)	231, 301
AluBI	AGCT	2 cut(s)	64, 265
AluI	AGCT	2 cut(s)	64, 265
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	2 cut(s)	4, 212
AoxI	GGCC	5 cut(s)	38, 139, 216, 281, 299
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	2 cut(s)	331, 411
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	6 cut(s)	73, 216, 281, 299, 326, 342
AvaII	GGWCC	3 cut(s)	73, 326, 342
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	1 cut(s)	272
BciT130I	CCWGG	2 cut(s)	233, 303
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	3 cut(s)	219, 224, 257
BlsI	GCNGC	3 cut(s)	220, 225, 258
Bme1390I	CCNGG	2 cut(s)	233, 303
Bme18I	GGWCC	3 cut(s)	73, 326, 342
BmgT120I	GGNCC	6 cut(s)	73, 216, 281, 299, 326, 342
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	2 cut(s)	233, 303
BmsI	GCATC	1 cut(s)	81
BpmI	CTGGAG	2 cut(s)	68, 324
BsaJI	CCNNGG	2 cut(s)	35, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	233, 303
BseDI	CCNNGG	2 cut(s)	35, 231
BseGI	GGATG	2 cut(s)	27, 96
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	243
BseYI	CCCAGC	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	5 cut(s)	40, 141, 218, 283, 301
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	172
BsnI	GGCC	5 cut(s)	40, 141, 218, 283, 301
Bsp143I	GATC	3 cut(s)	9, 113, 204
BspACI	CCGC	4 cut(s)	152, 167, 219, 224
BspANI	GGCC	5 cut(s)	40, 141, 218, 283, 301
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	343
BspPI	GGATC	2 cut(s)	4, 212
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	35, 231
BssMI	GATC	3 cut(s)	9, 113, 204
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	233, 303
Bst4CI	ACNGT	3 cut(s)	183, 213, 241
BstC8I	GCNNGC	1 cut(s)	395
BstF5I	GGATG	2 cut(s)	27, 96
BstFNI	CGCG	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	3 cut(s)	12, 116, 207
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	3 cut(s)	9, 113, 204
BstMWI	GCNNNNNNNGC	5 cut(s)	61, 164, 173, 262, 399
BstNI	CCWGG	2 cut(s)	233, 303
BstSCI	CCNGG	2 cut(s)	231, 301
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	243
BsuRI	GGCC	5 cut(s)	40, 141, 218, 283, 301
BtsCI	GGATG	2 cut(s)	27, 96
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	395
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	6 cut(s)	73, 216, 281, 299, 326, 342
CviAII	CATG	2 cut(s)	143, 403
DpnI	GATC	3 cut(s)	11, 115, 206
DpnII	GATC	3 cut(s)	9, 113, 204
EaeI	YGGCCR	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	35
Eco47I	GGWCC	3 cut(s)	73, 326, 342
Eco57I	CTGAAG	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	231, 301
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	2 cut(s)	146, 406
FaiI	YATR	8 cut(s)	81, 88, 144, 287, 322, 324, 367, 404
FatI	CATG	2 cut(s)	142, 402
FauI	CCCGC	1 cut(s)	160
FauNDI	CATATG	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	185
Fnu4HI	GCNGC	3 cut(s)	219, 224, 257
FokI	GGATG	2 cut(s)	14, 103
Fsp4HI	GCNGC	3 cut(s)	219, 224, 257
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	3 cut(s)	219, 224, 257
GsaI	CCCAGC	1 cut(s)	300
GsuI	CTGGAG	2 cut(s)	68, 324
HaeIII	GGCC	5 cut(s)	40, 141, 218, 283, 301
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	2 cut(s)	146, 406
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	345
Hpy8I	GTNNAC	1 cut(s)	186
HpyCH4III	ACNGT	3 cut(s)	183, 213, 241
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	94, 365
HpyF10VI	GCNNNNNNNGC	5 cut(s)	61, 164, 173, 262, 399
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	2 cut(s)	146, 406
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	3 cut(s)	9, 113, 204
LmnI	GCTCC	2 cut(s)	305, 317
Lsp1109I	GCAGC	1 cut(s)	243
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	3 cut(s)	11, 115, 206
MboI	GATC	3 cut(s)	9, 113, 204
MluCI	AATT	3 cut(s)	331, 351, 411
MnlI	CCTC	3 cut(s)	23, 45, 390
MseI	TTAA	2 cut(s)	110, 415
MspR9I	CCNGG	2 cut(s)	233, 303
MvaI	CCWGG	2 cut(s)	233, 303
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	5 cut(s)	61, 164, 173, 262, 399
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	3 cut(s)	9, 113, 204
NlaIII	CATG	2 cut(s)	146, 406
NlaIV	GGNNCC	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	220, 225, 258
Psp6I	CCWGG	2 cut(s)	231, 301
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	2 cut(s)	231, 301
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	6 cut(s)	73, 216, 281, 299, 326, 342
SaqAI	TTAA	2 cut(s)	110, 415
SatI	GCNGC	3 cut(s)	219, 224, 257
Sau3AI	GATC	3 cut(s)	9, 113, 204
Sau96I	GGNCC	6 cut(s)	73, 216, 281, 299, 326, 342
ScrFI	CCNGG	2 cut(s)	233, 303
SetI	ASST	5 cut(s)	66, 129, 191, 267, 271
SfaNI	GCATC	1 cut(s)	81
SinI	GGWCC	3 cut(s)	73, 326, 342
Sse9I	AATT	3 cut(s)	331, 351, 411
SsiI	CCGC	4 cut(s)	152, 167, 219, 224
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	231, 301
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	3 cut(s)	183, 213, 241
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	161
TaqII	GACCGA	1 cut(s)	343
TasI	AATT	3 cut(s)	331, 351, 411
TauI	GCSGC	2 cut(s)	221, 226
Tru1I	TTAA	2 cut(s)	110, 415
Tru9I	TTAA	2 cut(s)	110, 415
TscAI	CASTG	1 cut(s)	246
TseI	GCWGC	1 cut(s)	256
TspRI	CASTG	1 cut(s)	246
VpaK11BI	GGWCC	3 cut(s)	73, 326, 342
XapI	RAATTY	2 cut(s)	331, 411
XmiI	GTMKAC	1 cut(s)	185
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.