RchiOBHm_Chr2g0167161

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
81778854 .. 81782038
3185 bp
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UTR
Exon/CDS
Intron
PRQ53498

Sequence Viewer

Length: 210 bp
ATGATCTCAATGGAGGCAGAGACTCAGGACGACGTGGGAATTCAAATGTATACATCAACACTCATCCGTCTTCCAATTCCCAGTTCACACGAAAATAGGAAACAAATAAAGAAAGAAGAGCAGCGCAGAATCAAACCAAAAAGGAGGAGAAAATTCTTATCAAATCGGCTTAGGTCAGACTTGATAATTATCATTGGCTGCGGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

8.11

Weight (kDa)

10.35

Isoelectric Point (pI)

65.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 50
AciI CCGC 1 cut(s) 201
AcsI RAATTY 2 cut(s) 39, 152
AgsI TTSAA 1 cut(s) 44
AjiI CACGTC 1 cut(s) 34
AjuI GAANNNNNNNTTGG 2 cut(s) 67, 99
Alw26I GTCTC 1 cut(s) 14
ApeKI GCWGC 2 cut(s) 121, 198
ApoI RAATTY 2 cut(s) 39, 152
AspLEI GCGC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 133, 185
BcoDI GTCTC 1 cut(s) 14
BisI GCNGC 2 cut(s) 122, 199
BlsI GCNGC 2 cut(s) 123, 200
BmgBI CACGTC 1 cut(s) 34
BmrI ACTGGG 1 cut(s) 75
BmuI ACTGGG 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 170
BsaBI GATNNNNATC 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 81
Bse8I GATNNNNATC 1 cut(s) 188
BseGI GGATG 1 cut(s) 63
BseJI GATNNNNATC 1 cut(s) 188
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 2 cut(s) 133, 185
BsmAI GTCTC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 37
BspQI GCTCTTC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 81
BssMI GATC 1 cut(s) 3
BssNAI GTATAC 1 cut(s) 51
Bst1107I GTATAC 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 24, 170
BstF5I GGATG 1 cut(s) 63
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 1 cut(s) 3
BstV1I GCAGC 2 cut(s) 133, 185
BstV2I GAAGAC 1 cut(s) 62
BstZ17I GTATAC 1 cut(s) 51
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 63
CfoI GCGC 1 cut(s) 126
CviJI RGCY 2 cut(s) 169, 198
CviKI_1 RGCY 2 cut(s) 169, 198
DdeI CTNAG 2 cut(s) 24, 170
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 39
FaiI YATR 1 cut(s) 51
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 122, 199
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 122, 199
GlaI GCGC 1 cut(s) 125
GluI GCNGC 2 cut(s) 122, 199
HhaI GCGC 1 cut(s) 126
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 2 cut(s) 22, 129
Hpy166II GTNNAC 2 cut(s) 51, 86
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 2 cut(s) 51, 86
Hpy99I CGWCG 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 33
HpyF3I CTNAG 2 cut(s) 24, 170
HpySE526I ACGT 1 cut(s) 33
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 3
LguI GCTCTTC 1 cut(s) 111
LpnPI CCDG 2 cut(s) 11, 94
Lsp1109I GCAGC 2 cut(s) 133, 185
MaeII ACGT 1 cut(s) 33
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 62, 128
MluCI AATT 4 cut(s) 39, 75, 152, 186
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 2 cut(s) 7, 138
NdeII GATC 1 cut(s) 3
PciSI GCTCTTC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 129
PkrI GCNGC 2 cut(s) 123, 200
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
SapI GCTCTTC 1 cut(s) 111
SatI GCNGC 2 cut(s) 122, 199
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 16
SetI ASST 2 cut(s) 36, 176
SgeI CNNG 5 cut(s) 38, 46, 93, 101, 193
Sse9I AATT 4 cut(s) 39, 75, 152, 186
SsiI CCGC 1 cut(s) 201
TaiI ACGT 1 cut(s) 36
TasI AATT 4 cut(s) 39, 75, 152, 186
TfiI GAWTC 1 cut(s) 129
TseI GCWGC 2 cut(s) 121, 198
TspGWI ACGGA 1 cut(s) 56
XapI RAATTY 2 cut(s) 39, 152
XmiI GTMKAC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.