Rroxscaffold_7G00202330

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
50325247 .. 50327823
2577 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00202330.1

Sequence Viewer

Length: 168 bp
ATGATGGGAGTGGATATGGCTTCCTCACTATTCACCCCACTCTTAATTTATGGTTCATATAAAAGGAGAGAAGGGAAAGAGGAGCCATGCAAAATCAAACCCATAAAGAGGAAAAAATTGGTATTGTGGGCAAAGTGGATTCTCAATCAAACCCAAAAGGTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

6.48

Weight (kDa)

9.93

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 84
CviAII CATG 1 cut(s) 87
CviJI RGCY 2 cut(s) 20, 85
CviKI_1 RGCY 2 cut(s) 20, 85
FaeI CATG 1 cut(s) 90
FaiI YATR 6 cut(s) 17, 51, 58, 60, 88, 104
FatI CATG 1 cut(s) 86
Hin1II CATG 1 cut(s) 90
HinfI GANTC 1 cut(s) 139
HphI GGTGA 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 90
Hsp92II CATG 1 cut(s) 90
LmnI GCTCC 1 cut(s) 82
MluCI AATT 2 cut(s) 45, 116
MnlI CCTC 3 cut(s) 34, 73, 102
MseI TTAA 1 cut(s) 44
NlaIII CATG 1 cut(s) 90
NlaIV GGNNCC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 44
SetI ASST 1 cut(s) 162
SgeI CNNG 1 cut(s) 99
Sse9I AATT 2 cut(s) 45, 116
TasI AATT 2 cut(s) 45, 116
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.