Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008896

Physical Location & Seq

Genomic Coordinates Forward (+)

36680471 .. 36684694

Gene Structure 4224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034093

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTCGCAGGGGTGTCGGCAGGGGCCTCGGCAGACGTCGGCAGCTATCGGCAGGTGTATGCAGGGCTGTCGGCAGCTTCTCGGCAGGTGTCGGCAGGTGCTAGGCAGCTATCGGCAGGTGCTCGGCAGGTGCTCGGCAGGTGTCGACAGGTCTCGGCAGGTGCTCGGCAGGTCTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTCTCGGCAACTGCTCAGCAGGTCTCGGCAGCTGCTCGGCAGGTGTCGGCAGGTGCTCGACAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGTCGGCAGATGCTCGGCAGGTGTCGGCAGGTGTCGGCAGGTCTCGGCAGATGCTCGGCAGGTGTCGGCAGGTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTCTCGGCAGCTGCTCGGCAGGGGCTCGGCAGATGCTCGGCAGCTCTCGGCAGTTGATGGTGTCTCATAAAACGAAAGTGAATGACAAGGTGAAGGAAAATAATCTCAGTGGTCAACCAAAACAGTCACATTATTTGGGTTCGCATTATCACAGAGGTACAGCTGGAGGTCCAGACTTGAAAAGTTTCATTGTCCAATTTCCTGTGTCCCGAGAAGGTCCAGACTTGAAAAGTTTCATTGTCCAATTTCCTGTGTCCCGAGAAGGAAAGGTCAACAACATCAATAACATTAGTTTGGTCGCAAAGAAACAATCACAGAGGTTCAAGCTCATCAGTTCTGTTCTCTGGGAGAATTACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

29.58

Weight (kDa)

11.51

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008896)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337601 RchiOBHm_Chr1g0349491 RchiOBHm_Chr1g0354951 RchiOBHm_Chr2g0101091 RchiOBHm_Chr2g0134321 RchiOBHm_Chr2g0167161 RchiOBHm_Chr4g0438601 RchiOBHm_Chr5g0013151 RchiOBHm_Chr5g0079701 RchiOBHm_Chr6g0295341
rosa_laevigata	RLG00000034093
rosa_multiflora	Rmu_sc0003177.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004870 Rroxscaffold_1G00071300 Rroxscaffold_2G00108540 Rroxscaffold_2G00128230 Rroxscaffold_4G00310540 Rroxscaffold_7G00156880 Rroxscaffold_7G00202330
rosa_samantha	Rh1DG293700 Rh2AG445500 Rh5CG421200 Rh5DG037000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	628
AgsI	TTSAA	3 cut(s)	649, 697, 793
AluBI	AGCT	8 cut(s)	44, 76, 108, 275, 480, 513, 632, 796
AluI	AGCT	8 cut(s)	44, 76, 108, 275, 480, 513, 632, 796
Alw26I	GTCTC	7 cut(s)	156, 177, 250, 271, 416, 476, 537
Ama87I	CYCGRG	2 cut(s)	678, 726
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	8 cut(s)	41, 73, 105, 272, 275, 477, 480, 510
Asp700I	GAANNNNTTC	2 cut(s)	653, 701
AspS9I	GGNCC	3 cut(s)	23, 638, 686
AsuHPI	GGTGA	1 cut(s)	571
AvaI	CYCGRG	2 cut(s)	678, 726
AvaII	GGWCC	2 cut(s)	638, 686
BanII	GRGCYC	1 cut(s)	496
BbvI	GCAGC	8 cut(s)	53, 85, 117, 262, 284, 467, 489, 522
BccI	CCATC	1 cut(s)	520
BcgI	CGANNNNNNTGC	5 cut(s)	8, 30, 42, 50, 84
BcoDI	GTCTC	7 cut(s)	156, 177, 250, 271, 416, 476, 537
BfaI	CTAG	1 cut(s)	101
BisI	GCNGC	8 cut(s)	42, 74, 106, 273, 276, 478, 481, 511
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	8 cut(s)	43, 75, 107, 274, 277, 479, 482, 512
Bme18I	GGWCC	2 cut(s)	638, 686
BmeT110I	CYCGRG	2 cut(s)	678, 726
BmgT120I	GGNCC	3 cut(s)	23, 638, 686
BmiI	GGNNCC	1 cut(s)	24
BmsI	GCATC	3 cut(s)	369, 410, 492
BoxI	GACNNNNGTC	1 cut(s)	307
BpmI	CTGGAG	1 cut(s)	654
Bpu1102I	GCTNAGC	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	6 cut(s)	156, 177, 250, 271, 416, 476
BsaJI	CCNNGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	26
BseMII	CTCAG	2 cut(s)	272, 589
BseXI	GCAGC	8 cut(s)	53, 85, 117, 262, 284, 467, 489, 522
BshFI	GGCC	1 cut(s)	25
BsiHKCI	CYCGRG	2 cut(s)	678, 726
BslFI	GGGAC	2 cut(s)	661, 709
BsmAI	GTCTC	7 cut(s)	156, 177, 250, 271, 416, 476, 537
BsmFI	GGGAC	2 cut(s)	661, 709
BsnI	GGCC	1 cut(s)	25
Bso31I	GGTCTC	6 cut(s)	156, 177, 250, 271, 416, 476
BsoBI	CYCGRG	2 cut(s)	678, 726
Bsp1720I	GCTNAGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	2 cut(s)	271, 588
BspLI	GGNNCC	1 cut(s)	24
BspTNI	GGTCTC	6 cut(s)	156, 177, 250, 271, 416, 476
BssECI	CCNNGG	1 cut(s)	26
BssNI	GRCGYC	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	594
BstACI	GRCGYC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	258, 575
BstMAI	GTCTC	7 cut(s)	156, 177, 250, 271, 416, 476, 537
BstPAI	GACNNNNGTC	1 cut(s)	307
BstV1I	GCAGC	8 cut(s)	53, 85, 117, 262, 284, 467, 489, 522
BsuRI	GGCC	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	583
Cfr13I	GGNCC	3 cut(s)	23, 638, 686
Csp6I	GTAC	1 cut(s)	627
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	2 cut(s)	258, 575
Eco24I	GRGCYC	1 cut(s)	496
Eco31I	GGTCTC	6 cut(s)	156, 177, 250, 271, 416, 476
Eco47I	GGWCC	2 cut(s)	638, 686
Eco88I	CYCGRG	2 cut(s)	678, 726
EcoO109I	RGGNCCY	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	496
FaiI	YATR	3 cut(s)	59, 537, 829
FaqI	GGGAC	2 cut(s)	661, 709
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	8 cut(s)	42, 74, 106, 273, 276, 478, 481, 511
FriOI	GRGCYC	1 cut(s)	496
Fsp4HI	GCNGC	8 cut(s)	42, 74, 106, 273, 276, 478, 481, 511
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	8 cut(s)	42, 74, 106, 273, 276, 478, 481, 511
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	35
HincII	GTYRAC	3 cut(s)	145, 584, 742
HindII	GTYRAC	3 cut(s)	145, 584, 742
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	3 cut(s)	145, 584, 742
Hpy188III	TCNNGA	4 cut(s)	641, 678, 689, 726
Hpy8I	GTNNAC	3 cut(s)	145, 584, 742
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	3 cut(s)	556, 677, 725
HpyCH4III	ACNGT	1 cut(s)	594
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	1 cut(s)	61
HpyF3I	CTNAG	2 cut(s)	258, 575
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	35
Lsp1109I	GCAGC	8 cut(s)	53, 85, 117, 262, 284, 467, 489, 522
LweI	GCATC	3 cut(s)	369, 410, 492
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	594
MluCI	AATT	3 cut(s)	665, 713, 820
MnlI	CCTC	4 cut(s)	36, 617, 629, 780
MroXI	GAANNNNTTC	2 cut(s)	653, 701
MspA1I	CMGCKG	3 cut(s)	275, 480, 632
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	594
PdmI	GAANNNNTTC	2 cut(s)	653, 701
PkrI	GCNGC	8 cut(s)	43, 75, 107, 274, 277, 479, 482, 512
PshAI	GACNNNNGTC	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	3 cut(s)	23, 638, 686
PvuII	CAGCTG	3 cut(s)	275, 480, 632
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
SalI	GTCGAC	1 cut(s)	143
SatI	GCNGC	8 cut(s)	42, 74, 106, 273, 276, 478, 481, 511
Sau96I	GGNCC	3 cut(s)	23, 638, 686
SfaNI	GCATC	3 cut(s)	369, 410, 492
SinI	GGWCC	2 cut(s)	638, 686
Sse9I	AATT	3 cut(s)	665, 713, 820
SspMI	CTAG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	594
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	144, 301
TasI	AATT	3 cut(s)	665, 713, 820
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	594
TseI	GCWGC	8 cut(s)	41, 73, 105, 272, 275, 477, 480, 510
Tsp45I	GTSAC	1 cut(s)	594
TspDTI	ATGAA	2 cut(s)	646, 694
TspRI	CASTG	1 cut(s)	583
VpaK11BI	GGWCC	2 cut(s)	638, 686
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	2 cut(s)	653, 701
XspI	CTAG	1 cut(s)	101
ZraI	GACGTC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.