RchiOBHm_Chr4g0438601

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
61222039 .. 61225124
3086 bp
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UTR
Exon/CDS
Intron
PRQ40672

Sequence Viewer

Length: 195 bp
ATGAAATCGTGTGATTGGAAAAAAATAAAAAACGGTAGCCCGCGGTTAGCACGATTGGAGAGCACGCCATCACCAGATAAAAGGGTAACCGTCAGGGAGCACGATCGGAGACTGGAGACATCGTGGGAGATGATCGGAGTAGATATGGCCTCATCGCTATTCACCCGTCTCTCAGTTTACAATTCATTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.46

Weight (kDa)

9.42

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 43
AciI CCGC 2 cut(s) 41, 43
Alw21I GWGCWC 2 cut(s) 65, 102
Alw26I GTCTC 3 cut(s) 103, 110, 173
AoxI GGCC 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 63, 154
Bbv12I GWGCWC 2 cut(s) 65, 102
BccI CCATC 1 cut(s) 76
BcoDI GTCTC 3 cut(s) 103, 110, 173
BpmI CTGGAG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bse1I ACTGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 43
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 106
BsiHKAI GWGCWC 2 cut(s) 65, 102
BsmAI GTCTC 3 cut(s) 103, 110, 173
BsmBI CGTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 65, 102
Bsp143I GATC 2 cut(s) 103, 132
BspACI CCGC 2 cut(s) 41, 43
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 185
BspFNI CGCG 1 cut(s) 43
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 2 cut(s) 103, 132
Bst4CI ACNGT 2 cut(s) 35, 91
BstC8I GCNNGC 2 cut(s) 41, 65
BstDEI CTNAG 1 cut(s) 172
BstDSI CCRYGG 1 cut(s) 41
BstEII GGTNACC 1 cut(s) 85
BstFNI CGCG 1 cut(s) 43
BstKTI GATC 2 cut(s) 106, 135
BstMAI GTCTC 3 cut(s) 103, 110, 173
BstMBI GATC 2 cut(s) 103, 132
BstMCI CGRYCG 1 cut(s) 106
BstPI GGTNACC 1 cut(s) 85
BstUI CGCG 1 cut(s) 43
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 41
BtgZI GCGATG 1 cut(s) 138
Cac8I GCNNGC 2 cut(s) 41, 65
Cfr42I CCGCGG 1 cut(s) 44
CviJI RGCY 2 cut(s) 39, 149
CviKI_1 RGCY 2 cut(s) 39, 149
DdeI CTNAG 1 cut(s) 172
DpnI GATC 2 cut(s) 105, 134
DpnII GATC 2 cut(s) 103, 132
Eco91I GGTNACC 1 cut(s) 85
EcoO65I GGTNACC 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 173
FaiI YATR 1 cut(s) 146
FauI CCCGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 1 cut(s) 149
HphI GGTGA 2 cut(s) 63, 154
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 108, 137
Hpy8I GTNNAC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 35, 91
HpyF3I CTNAG 1 cut(s) 172
KspI CCGCGG 1 cut(s) 44
Kzo9I GATC 2 cut(s) 103, 132
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 3 cut(s) 79, 87, 98
MaeIII GTNAC 1 cut(s) 85
MalI GATC 2 cut(s) 105, 134
MboI GATC 2 cut(s) 103, 132
MhlI GDGCHC 2 cut(s) 65, 102
MluCI AATT 1 cut(s) 181
MnlI CCTC 1 cut(s) 160
MspA1I CMGCKG 1 cut(s) 43
MvnI CGCG 1 cut(s) 43
NdeII GATC 2 cut(s) 103, 132
Ple19I CGATCG 1 cut(s) 106
PspEI GGTNACC 1 cut(s) 85
PvuI CGATCG 1 cut(s) 106
SacII CCGCGG 1 cut(s) 44
Sau3AI GATC 2 cut(s) 103, 132
SduI GDGCHC 2 cut(s) 65, 102
Sfr303I CCGCGG 1 cut(s) 44
SgrBI CCGCGG 1 cut(s) 44
Sse9I AATT 1 cut(s) 181
SsiI CCGC 2 cut(s) 41, 43
TaaI ACNGT 2 cut(s) 35, 91
TasI AATT 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 17, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.