RchiOBHm_Chr5g0013151

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
8912191 .. 8914185
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29369

Sequence Viewer

Length: 165 bp
ATGCACAAGACGACGTGGGAGAAAATCGGTGTACAAATGGATGCATCAGGACTCATCCCTCTTCCAACTTACAGTTCATACGAAAATAAGATACACAGAAAGAAAGAAGAGCAGAGCACAATCAAACCCAGGAGGAGGAGAAAGAGAAAGAAACAAATCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.47

Weight (kDa)

10.6

Isoelectric Point (pI)

86.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 135
AjiI CACGTC 1 cut(s) 15
AjnI CCWGG 1 cut(s) 128
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
Alw21I GWGCWC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 130
BmgBI CACGTC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 2 cut(s) 31, 53
BsaJI CCNNGG 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 2 cut(s) 46, 54
BseLI CCNNNNNNNGG 1 cut(s) 135
BseRI GAGGAG 2 cut(s) 148, 151
BsiHKAI GWGCWC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 119
Bsp1407I TGTACA 1 cut(s) 31
BspQI GCTCTTC 1 cut(s) 102
BsrGI TGTACA 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 2 cut(s) 66, 102
BstAUI TGTACA 1 cut(s) 31
BstF5I GGATG 2 cut(s) 46, 54
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 2 cut(s) 46, 54
Csp6I GTAC 1 cut(s) 32
CviQI GTAC 1 cut(s) 32
Eam1104I CTCTTC 2 cut(s) 66, 102
EarI CTCTTC 2 cut(s) 66, 102
EcoRII CCWGG 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 46
FaiI YATR 1 cut(s) 79
FokI GGATG 2 cut(s) 41, 53
HinfI GANTC 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 32
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 32
Hpy99I CGWCG 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 2 cut(s) 4, 44
HpySE526I ACGT 1 cut(s) 14
LguI GCTCTTC 1 cut(s) 102
LpnPI CCDG 3 cut(s) 33, 115, 142
LweI GCATC 2 cut(s) 31, 53
MaeII ACGT 1 cut(s) 14
MboII GAAGA 2 cut(s) 53, 119
MhlI GDGCHC 1 cut(s) 119
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 3 cut(s) 69, 126, 129
Mph1103I ATGCAT 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 46
PciSI GCTCTTC 1 cut(s) 102
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 102
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 119
SetI ASST 1 cut(s) 17
SfaNI GCATC 2 cut(s) 31, 53
SgeI CNNG 5 cut(s) 19, 27, 60, 141, 142
StyD4I CCNGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 17
TatI WGTACW 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.