Rh5CG421200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
58075478 .. 58078146
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG421200.1

Sequence Viewer

Length: 219 bp
ATGACAAAGTTTATAAGCGAGAATATTAATCATTCAAGTTTCAGAATTGACAACCATAACAATGTTGACAATGTGAAGGAAAAAAATCTCAGTGATCAAGTAAAACGGTCACATTATTTGGGTTCGCATTATCACAGAGGTACAGCTGGAGGTGCAGACTTGAAAAGTTTCATTCTCCAATTTCCTGTGTCCCGAGAAGGTGCAGGAAAGCAGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.08

Weight (kDa)

9.52

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 14
AfaI GTAC 1 cut(s) 142
AgsI TTSAA 2 cut(s) 36, 163
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 192
AseI ATTAAT 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 192
BclI TGATCA 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 175
BsoBI CYCGRG 1 cut(s) 192
Bsp143I GATC 1 cut(s) 94
BspCNI CTCAG 1 cut(s) 102
BssMI GATC 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 89
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 97
Csp6I GTAC 1 cut(s) 141
CviJI RGCY 1 cut(s) 146
CviKI_1 RGCY 1 cut(s) 146
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 89
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 192
FaiI YATR 2 cut(s) 14, 57
FaqI GGGAC 1 cut(s) 175
FbaI TGATCA 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 168
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 192
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 70, 191
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4V TGCA 2 cut(s) 155, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 4 cut(s) 132, 189, 197, 198
MaeIII GTNAC 1 cut(s) 108
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MluCI AATT 2 cut(s) 45, 179
MnlI CCTC 2 cut(s) 131, 143
MroXI GAANNNNTTC 1 cut(s) 167
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 167
PshBI ATTAAT 1 cut(s) 27
PsiI TTATAA 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 60
SaqAI TTAA 1 cut(s) 27
Sau3AI GATC 1 cut(s) 94
SetI ASST 4 cut(s) 142, 148, 154, 202
SgeI CNNG 8 cut(s) 31, 48, 110, 159, 172, 197, 204, 206
SmiMI CAYNNNNRTG 1 cut(s) 60
Sse9I AATT 2 cut(s) 45, 179
SspI AATATT 1 cut(s) 25
TaaI ACNGT 1 cut(s) 108
TasI AATT 2 cut(s) 45, 179
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 160
TspRI CASTG 1 cut(s) 97
VspI ATTAAT 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.