Rroxscaffold_1G00071300

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
92168218 .. 92170787
2570 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00071300.1

Sequence Viewer

Length: 195 bp
ATGATCGGAGGAGAGATGGCTTCATCGCTATTCACCCCACTCTCAATCTACGGTTCATATAAAAGGAGAAAAGGGAAAGAGGAGCAGAGCAAATTCAAACCCAGAAAGAGGAAAAAATTGGTATCAAAATCGGTGATTGCAGATAAGGTATTGTGTGCAGAGTGGATTCTCAATCAAACCCAAAAGGCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.32

Weight (kDa)

10.07

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 1 cut(s) 97
ApoI RAATTY 1 cut(s) 92
AsuHPI GGTGA 2 cut(s) 25, 145
BccI CCATC 1 cut(s) 10
Bsc4I CCNNNNNNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 108
BseRI GAGGAG 2 cut(s) 24, 95
BsgI GTGCAG 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 108
Bsp143I GATC 1 cut(s) 3
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 1 cut(s) 53
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BtgZI GCGATG 1 cut(s) 9
CviJI RGCY 1 cut(s) 20
CviKI_1 RGCY 1 cut(s) 20
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
FaiI YATR 2 cut(s) 58, 60
HinfI GANTC 1 cut(s) 166
HphI GGTGA 2 cut(s) 25, 145
Hpy188I TCNGA 1 cut(s) 8
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 140, 158
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 1 cut(s) 115
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MluCI AATT 2 cut(s) 92, 116
MnlI CCTC 2 cut(s) 73, 102
NdeII GATC 1 cut(s) 3
PfeI GAWTC 1 cut(s) 166
Sau3AI GATC 1 cut(s) 3
SetI ASST 1 cut(s) 150
SgeI CNNG 1 cut(s) 114
Sse9I AATT 2 cut(s) 92, 116
TaaI ACNGT 1 cut(s) 53
TasI AATT 2 cut(s) 92, 116
TfiI GAWTC 1 cut(s) 166
TspDTI ATGAA 2 cut(s) 12, 45
XapI RAATTY 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.