Rroxscaffold_2G00128230

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
63879386 .. 63882273
2888 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00128230.1

Sequence Viewer

Length: 165 bp
ATGCACAAGAAGACGTGGGAGAAAATCGGTGTACAAATGGATGCATCAGGACTCATCCCTCTTCCAATTTACAGTTCATACGAAAATAGGAAACACAGAAAGAAAGAAGAGCAGAGCACAATCAAACCTAGGAGGAGGAGAAAGAGAAAGAAACAAATCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.55

Weight (kDa)

10.86

Isoelectric Point (pI)

81.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 33
AjiI CACGTC 1 cut(s) 15
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
Alw21I GWGCWC 1 cut(s) 119
AspA2I CCTAGG 1 cut(s) 128
AvrII CCTAGG 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 119
BfaI CTAG 1 cut(s) 129
BlnI CCTAGG 1 cut(s) 128
BmgBI CACGTC 1 cut(s) 15
BmsI GCATC 2 cut(s) 31, 53
BpiI GAAGAC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 2 cut(s) 46, 54
BseRI GAGGAG 2 cut(s) 148, 151
BsiHKAI GWGCWC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 119
Bsp1407I TGTACA 1 cut(s) 31
BspQI GCTCTTC 1 cut(s) 102
BsrGI TGTACA 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 2 cut(s) 66, 102
BstAUI TGTACA 1 cut(s) 31
BstF5I GGATG 2 cut(s) 46, 54
BstV2I GAAGAC 1 cut(s) 17
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 2 cut(s) 46, 54
Csp6I GTAC 1 cut(s) 32
CviQI GTAC 1 cut(s) 32
Eam1104I CTCTTC 2 cut(s) 66, 102
EarI CTCTTC 2 cut(s) 66, 102
Eco130I CCWWGG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 128
FaiI YATR 1 cut(s) 79
FokI GGATG 2 cut(s) 41, 53
FspBI CTAG 1 cut(s) 129
HinfI GANTC 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 32
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 2 cut(s) 4, 44
HpySE526I ACGT 1 cut(s) 14
LguI GCTCTTC 1 cut(s) 102
LpnPI CCDG 1 cut(s) 33
LweI GCATC 2 cut(s) 31, 53
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 14
MboII GAAGA 3 cut(s) 22, 53, 119
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 1 cut(s) 66
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 3 cut(s) 69, 126, 129
Mph1103I ATGCAT 1 cut(s) 46
NsiI ATGCAT 1 cut(s) 46
PciSI GCTCTTC 1 cut(s) 102
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 102
SchI GAGTC 1 cut(s) 45
SduI GDGCHC 1 cut(s) 119
SetI ASST 2 cut(s) 17, 130
SfaNI GCATC 2 cut(s) 31, 53
SgeI CNNG 4 cut(s) 19, 27, 60, 141
Sse9I AATT 1 cut(s) 66
SspMI CTAG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 17
TasI AATT 1 cut(s) 66
TatI WGTACW 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 66
XmaJI CCTAGG 1 cut(s) 128
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.